| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is iolS [H]
Identifier: 103486448
GI number: 103486448
Start: 984054
End: 985049
Strand: Reverse
Name: iolS [H]
Synonym: Sala_0958
Alternate gene names: 103486448
Gene position: 985049-984054 (Counterclockwise)
Preceding gene: 103486449
Following gene: 103486443
Centisome position: 29.45
GC content: 66.37
Gene sequence:
>996_bases ATGAAATATCGCACGCTCGGCCACGGCCTCACCGTTTCCGCGATCGGCATCGGCTGCATGCCGATGATCAAGGGCGGCAA TATCCTTTATGGCGAGGCGGCCGATCTCGACGAAGCGACGCGCACCATCCACCGCGCGATCGACCTCGGCGTCACCTTTT TCGATACCGCGCAAATCTATGGTCCGTTCAGCAACGAGGAGCTGCTGGGCGAAGCGATCCGCGGCAAGCGCGACGGCCTT GTCATCGCCACCAAGTTCGGCTTCCGCTTCGACGGCAAGCAGATCACCGGCGTCGATGGCTCGCCGGAAAACGCGCGCAA AAGCTGCGAAGGTTCGCTCCAGCGGCTCGGCATCGACACGATCGACCTTTTCTACCAGCACCGCGTCGATCCCGCGATCC CGATCGAGGAGGTCGTCGGCGGGATGATGGAGTTGGTGAAGGAGGGCAAGGTGCGCCATATCGCGCTCTCCGAAGCCGGT CCCGAAACGCTCCGCCGCGCTGCCAAGGCCGCGCCGATCACCGCGCTGCAAAGCGAGTATTCGATCTGGGAGCGCGACGT GGAGGACGAGATCCTGCCCGTCTGCCGCGAACATGGCATCGGCTTCGTCCCCTATTCGCCGCTTGGCCGCGGTTTCCTCG CGGGTGCGGTGCGCAGCCGCGACGAACTGCCCGAGCATGACTGGCGCCGCAACGACCCGCGCTATTCGGACGAGAATCTC CCCGCCAACCTCGCGATCGTCGATGCCATCGGCGCGGTCGCCGACAAGCATGGCGTGTCAAAGGCGCAGGTGGCGCTCGC CTGGCTGCTCGCGCGGGGCGAGGACATCGTCCCCATCCCCGGCACCAAGCGGCGCGCGACGATGGAGGACAGCGTCGGCG CCGCCGACGTCACGCTGACCGCCGACGACATCGAGGCGATCGACTCCGCAGCGCCGAAGGGCGGAACCAGCGGCCCGCGC TATGGCGAACAGGGGATGCGGATGGTGCGGCTGTAA
Upstream 100 bases:
>100_bases TCCCCGATATATTCCGCACCGTCGGCAATGTCGTCGCCGATGTCGCCGCGACGCGCTTCGCCGCCGGCGAAGAAACGCAC GCACCCGCAGGAGAAACGCC
Downstream 100 bases:
>100_bases GACTTCGGCGGCAGGGCCGTTATCCCACCCAGCGCCAGACCCCTGCAACCATATAGCCCAGCGCGCCATGCGCCCAGCTC GCCGCGAGCCAGAGGATGAT
Product: aldo/keto reductase
Products: NA
Alternate protein names: AKR11A; Vegetative protein 147; VEG147 [H]
Number of amino acids: Translated: 331; Mature: 331
Protein sequence:
>331_residues MKYRTLGHGLTVSAIGIGCMPMIKGGNILYGEAADLDEATRTIHRAIDLGVTFFDTAQIYGPFSNEELLGEAIRGKRDGL VIATKFGFRFDGKQITGVDGSPENARKSCEGSLQRLGIDTIDLFYQHRVDPAIPIEEVVGGMMELVKEGKVRHIALSEAG PETLRRAAKAAPITALQSEYSIWERDVEDEILPVCREHGIGFVPYSPLGRGFLAGAVRSRDELPEHDWRRNDPRYSDENL PANLAIVDAIGAVADKHGVSKAQVALAWLLARGEDIVPIPGTKRRATMEDSVGAADVTLTADDIEAIDSAAPKGGTSGPR YGEQGMRMVRL
Sequences:
>Translated_331_residues MKYRTLGHGLTVSAIGIGCMPMIKGGNILYGEAADLDEATRTIHRAIDLGVTFFDTAQIYGPFSNEELLGEAIRGKRDGL VIATKFGFRFDGKQITGVDGSPENARKSCEGSLQRLGIDTIDLFYQHRVDPAIPIEEVVGGMMELVKEGKVRHIALSEAG PETLRRAAKAAPITALQSEYSIWERDVEDEILPVCREHGIGFVPYSPLGRGFLAGAVRSRDELPEHDWRRNDPRYSDENL PANLAIVDAIGAVADKHGVSKAQVALAWLLARGEDIVPIPGTKRRATMEDSVGAADVTLTADDIEAIDSAAPKGGTSGPR YGEQGMRMVRL >Mature_331_residues MKYRTLGHGLTVSAIGIGCMPMIKGGNILYGEAADLDEATRTIHRAIDLGVTFFDTAQIYGPFSNEELLGEAIRGKRDGL VIATKFGFRFDGKQITGVDGSPENARKSCEGSLQRLGIDTIDLFYQHRVDPAIPIEEVVGGMMELVKEGKVRHIALSEAG PETLRRAAKAAPITALQSEYSIWERDVEDEILPVCREHGIGFVPYSPLGRGFLAGAVRSRDELPEHDWRRNDPRYSDENL PANLAIVDAIGAVADKHGVSKAQVALAWLLARGEDIVPIPGTKRRATMEDSVGAADVTLTADDIEAIDSAAPKGGTSGPR YGEQGMRMVRL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the aldo/keto reductase 2 family [H]
Homologues:
Organism=Homo sapiens, GI27436964, Length=329, Percent_Identity=28.2674772036474, Blast_Score=106, Evalue=3e-23, Organism=Homo sapiens, GI27436969, Length=329, Percent_Identity=28.5714285714286, Blast_Score=105, Evalue=6e-23, Organism=Homo sapiens, GI4504825, Length=327, Percent_Identity=28.4403669724771, Blast_Score=104, Evalue=1e-22, Organism=Homo sapiens, GI27436962, Length=329, Percent_Identity=27.9635258358663, Blast_Score=103, Evalue=2e-22, Organism=Homo sapiens, GI27436966, Length=329, Percent_Identity=27.6595744680851, Blast_Score=101, Evalue=7e-22, Organism=Homo sapiens, GI27436971, Length=329, Percent_Identity=27.6595744680851, Blast_Score=99, Evalue=5e-21, Organism=Homo sapiens, GI223718702, Length=185, Percent_Identity=32.972972972973, Blast_Score=79, Evalue=5e-15, Organism=Homo sapiens, GI41327764, Length=185, Percent_Identity=32.4324324324324, Blast_Score=75, Evalue=1e-13, Organism=Homo sapiens, GI41152114, Length=276, Percent_Identity=27.536231884058, Blast_Score=72, Evalue=7e-13, Organism=Escherichia coli, GI87081735, Length=321, Percent_Identity=33.0218068535826, Blast_Score=153, Evalue=2e-38, Organism=Escherichia coli, GI1788070, Length=307, Percent_Identity=29.6416938110749, Blast_Score=127, Evalue=8e-31, Organism=Escherichia coli, GI1789375, Length=335, Percent_Identity=29.2537313432836, Blast_Score=127, Evalue=1e-30, Organism=Escherichia coli, GI1787674, Length=306, Percent_Identity=29.7385620915033, Blast_Score=110, Evalue=1e-25, Organism=Escherichia coli, GI1788081, Length=304, Percent_Identity=27.6315789473684, Blast_Score=105, Evalue=6e-24, Organism=Escherichia coli, GI1789199, Length=309, Percent_Identity=25.8899676375405, Blast_Score=68, Evalue=1e-12, Organism=Escherichia coli, GI48994888, Length=279, Percent_Identity=26.1648745519713, Blast_Score=64, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6325169, Length=333, Percent_Identity=27.9279279279279, Blast_Score=110, Evalue=4e-25, Organism=Saccharomyces cerevisiae, GI6325384, Length=314, Percent_Identity=28.0254777070064, Blast_Score=110, Evalue=4e-25, Organism=Saccharomyces cerevisiae, GI6323998, Length=323, Percent_Identity=26.625386996904, Blast_Score=102, Evalue=9e-23, Organism=Saccharomyces cerevisiae, GI6319958, Length=277, Percent_Identity=26.3537906137184, Blast_Score=101, Evalue=2e-22, Organism=Saccharomyces cerevisiae, GI6319951, Length=325, Percent_Identity=26.1538461538462, Blast_Score=99, Evalue=6e-22, Organism=Saccharomyces cerevisiae, GI6322615, Length=257, Percent_Identity=26.0700389105058, Blast_Score=94, Evalue=2e-20, Organism=Drosophila melanogaster, GI24646155, Length=227, Percent_Identity=32.15859030837, Blast_Score=90, Evalue=3e-18, Organism=Drosophila melanogaster, GI24646159, Length=226, Percent_Identity=29.2035398230088, Blast_Score=81, Evalue=1e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001395 - InterPro: IPR018170 - InterPro: IPR020471 - InterPro: IPR023210 [H]
Pfam domain/function: PF00248 Aldo_ket_red [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 35851; Mature: 35851
Theoretical pI: Translated: 5.16; Mature: 5.16
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKYRTLGHGLTVSAIGIGCMPMIKGGNILYGEAADLDEATRTIHRAIDLGVTFFDTAQIY CCCEECCCCCEEEEECCCCEEEECCCCEEECCCCCHHHHHHHHHHHHHHCCEEEEHHHHC GPFSNEELLGEAIRGKRDGLVIATKFGFRFDGKQITGVDGSPENARKSCEGSLQRLGIDT CCCCCHHHHHHHHCCCCCCEEEEEECCEEECCCEEECCCCCCHHHHHHHHHHHHHCCCHH IDLFYQHRVDPAIPIEEVVGGMMELVKEGKVRHIALSEAGPETLRRAAKAAPITALQSEY HHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCHHHHHHHH SIWERDVEDEILPVCREHGIGFVPYSPLGRGFLAGAVRSRDELPEHDWRRNDPRYSDENL HHHHHCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC PANLAIVDAIGAVADKHGVSKAQVALAWLLARGEDIVPIPGTKRRATMEDSVGAADVTLT CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEECCCCCCCCCCHHCCCCCCEEEEE ADDIEAIDSAAPKGGTSGPRYGEQGMRMVRL HHHHHHHHHCCCCCCCCCCCCCHHCHHECCC >Mature Secondary Structure MKYRTLGHGLTVSAIGIGCMPMIKGGNILYGEAADLDEATRTIHRAIDLGVTFFDTAQIY CCCEECCCCCEEEEECCCCEEEECCCCEEECCCCCHHHHHHHHHHHHHHCCEEEEHHHHC GPFSNEELLGEAIRGKRDGLVIATKFGFRFDGKQITGVDGSPENARKSCEGSLQRLGIDT CCCCCHHHHHHHHCCCCCCEEEEEECCEEECCCEEECCCCCCHHHHHHHHHHHHHCCCHH IDLFYQHRVDPAIPIEEVVGGMMELVKEGKVRHIALSEAGPETLRRAAKAAPITALQSEY HHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCHHHHHHHH SIWERDVEDEILPVCREHGIGFVPYSPLGRGFLAGAVRSRDELPEHDWRRNDPRYSDENL HHHHHCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC PANLAIVDAIGAVADKHGVSKAQVALAWLLARGEDIVPIPGTKRRATMEDSVGAADVTLT CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEECCCCCCCCCCHHCCCCCCEEEEE ADDIEAIDSAAPKGGTSGPRYGEQGMRMVRL HHHHHHHHHCCCCCCCCCCCCCHHCHHECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7584049; 9384377; 9298659 [H]