| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486441
Identifier: 103486441
GI number: 103486441
Start: 975503
End: 977344
Strand: Direct
Name: 103486441
Synonym: Sala_0951
Alternate gene names: NA
Gene position: 975503-977344 (Clockwise)
Preceding gene: 103486440
Following gene: 103486444
Centisome position: 29.16
GC content: 73.62
Gene sequence:
>1842_bases ATGGGCTTTCGCCGCGTCTGGACGGGCGCGCTGCTGATCGCGGCGTCGCTTTCGGCGTGCGGCGGCGCGTCCGACACGCC GCGCGGCGAGATGGAGGCGCGCCGTGCCGCTTTGCAGCAGGCCATAGCCGACGATCCCGGGGCGATCGCCGAGCGCGTCG CTCTCGCGCGGGTGGCGATCGCGCTCGGCGATGGCGTCGGCGCCGAAGCGGCGGTGAAGGGGGCGATCGAGGCGGGGGCG AATGATGCGGCGTTGCGCCCACTGCTCGCGCGCGCCTTTGAATTGCAGGGCGACGGCGCGCGGGCGCTGGCCGCACTCGA GGCCGGGCCGGTCATCCCCGAAATGCTGGGCGAGGCGGCGTGGGTCGCGGGCGACGTTCACCTTGCGAACGGCGATCTGG CGGCGGCGCGCGAGGCCTATGACCGCGCGGTGCACGAGCTGCCGCGCAGCTCCGCGCTGTGGGTCGATGTCGCGCGCTTT CGCGACGCCAGCGCCGATATGCGCGGCGCGCGCGACGCGGTCGATTATGCGATTGAACTCGACGCGGCGAACAGCGCGGC GCTGGCGTATAAGGCCAATCTGGTGCGGAGGGCCGAAGGGCTAACCGCGGCGCTGGCGTGGTACGACCGGGCGCTTGCCG CCGATCCGGGCAATGCCGCGGCGCTGATCGATCAGGCGGCGACGCTCGGCGATCTTGGCCGCTACCGCGACATGCTGACG GCGCTGCGCCGTGCGGCGGTGCTCGTCCCGCGCGAGCCGCGGATCCATTATCTGCAAGCCGTGCTGGCGGCACGCGCGGC GAATTACCGGCTCGCGCGCAGTCTGCTCCAGCGCACGCGCGGCGCGCTCGATTCCGAGCCGGGGTTCATGCTGCTGAGCG CGGTGGTCGAGCTGGAGCTGGGCGGCGAGGCGGTGGCGGCGAGCTGGGCCGAGCGACTGCTTGCCGAACAGCCGCATAAT TTCGCCGCACGGCGCCTGCTGGCGGCGGCCGAATGGGCGGGCGGCGATGCCGAGGCGGCGCTCGCGGCGCTGCGTCCGCT CGTCGCGCGGCCCGACGCCGACAGCTGGTCGCTGCTGCTCGCCGCGCGCGCGGCGGCCGAACAGGGACGCGATATCGAAT CGGCCGGCTATCAGGCGCGCGCCGCGACGCTGGACCGCGGCGAGGCGGTGCCCTTTGCCGTCGATGCCGATTATGGCCTG CTGACGATGGCCGCCGACGCCGCGCCGCTCGATCCGGCGACCGTGATCCCGGCGATTTCGGCGGATATGGCGCGCGGCAA CACGGCGCGCGCGATCGAGCGCGCGGTCCGGCTGCGCGATGCCAATCCGGGAGTCGCCGACGCGCATATGCTGCTCGGCG ACGCGGCGCTCGCGGGCGGGCGCTACGCGCTGGCGGTCGAGGCCTATCGCGCCGCCCGCAACCTCGACGCGGGGGAGCGC ACGACGTTGCGGCTCGCGAATGCGCTCTATCGCGCCGGCGACGCGGCGGGGTCGGGCGCGGCGATCATGGCGTTACGCGA CCGTCAGCCGTCGAGCGTCGCCGCCGATCGGATCGCGGGCCATCTGGCGATCGAGCTTGGGCACTGGGACGCGGCGATCG CGCATTTCGAGCGCGTGGGCAGCCGGATCGGCGATCGCGACGCCGTGGTGCTGCGCGAACTCGCACGCGCGTGGGCGGCA AAGGGCGACGATGCGCGCGCGCTGGTGCTGATCGACCGCGCCTATCGGTTGCAGCCGCTGAACGCGGGCATCATGGAATT ATACGCGGCGCTGCTGGAGCGGCGCGGGAAGCGCCAGGCGGCGGCGGATTTGCGCGACAAGGCGGCGCAGATCGGGCGGT AG
Upstream 100 bases:
>100_bases GACACAGAGCGAGGGCAATATCTCGCACGCGGCCAAGCTGCTGGGGATCAGTCGCCCGACGCTTTACGACCTGCTCAAAC AATATCGGATGCAGGGCTGA
Downstream 100 bases:
>100_bases GGGGGGCGGGGTTAAGGGTCGGTAGCGGCCTCTCTCTTACCGTCATCCCGGCGAAGGCCGGGATCTCGCCGGTGCGGTAA ACTGATAGGGTGAGATCCCG
Product: tetratricopeptide TPR_2
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 613; Mature: 612
Protein sequence:
>613_residues MGFRRVWTGALLIAASLSACGGASDTPRGEMEARRAALQQAIADDPGAIAERVALARVAIALGDGVGAEAAVKGAIEAGA NDAALRPLLARAFELQGDGARALAALEAGPVIPEMLGEAAWVAGDVHLANGDLAAAREAYDRAVHELPRSSALWVDVARF RDASADMRGARDAVDYAIELDAANSAALAYKANLVRRAEGLTAALAWYDRALAADPGNAAALIDQAATLGDLGRYRDMLT ALRRAAVLVPREPRIHYLQAVLAARAANYRLARSLLQRTRGALDSEPGFMLLSAVVELELGGEAVAASWAERLLAEQPHN FAARRLLAAAEWAGGDAEAALAALRPLVARPDADSWSLLLAARAAAEQGRDIESAGYQARAATLDRGEAVPFAVDADYGL LTMAADAAPLDPATVIPAISADMARGNTARAIERAVRLRDANPGVADAHMLLGDAALAGGRYALAVEAYRAARNLDAGER TTLRLANALYRAGDAAGSGAAIMALRDRQPSSVAADRIAGHLAIELGHWDAAIAHFERVGSRIGDRDAVVLRELARAWAA KGDDARALVLIDRAYRLQPLNAGIMELYAALLERRGKRQAAADLRDKAAQIGR
Sequences:
>Translated_613_residues MGFRRVWTGALLIAASLSACGGASDTPRGEMEARRAALQQAIADDPGAIAERVALARVAIALGDGVGAEAAVKGAIEAGA NDAALRPLLARAFELQGDGARALAALEAGPVIPEMLGEAAWVAGDVHLANGDLAAAREAYDRAVHELPRSSALWVDVARF RDASADMRGARDAVDYAIELDAANSAALAYKANLVRRAEGLTAALAWYDRALAADPGNAAALIDQAATLGDLGRYRDMLT ALRRAAVLVPREPRIHYLQAVLAARAANYRLARSLLQRTRGALDSEPGFMLLSAVVELELGGEAVAASWAERLLAEQPHN FAARRLLAAAEWAGGDAEAALAALRPLVARPDADSWSLLLAARAAAEQGRDIESAGYQARAATLDRGEAVPFAVDADYGL LTMAADAAPLDPATVIPAISADMARGNTARAIERAVRLRDANPGVADAHMLLGDAALAGGRYALAVEAYRAARNLDAGER TTLRLANALYRAGDAAGSGAAIMALRDRQPSSVAADRIAGHLAIELGHWDAAIAHFERVGSRIGDRDAVVLRELARAWAA KGDDARALVLIDRAYRLQPLNAGIMELYAALLERRGKRQAAADLRDKAAQIGR >Mature_612_residues GFRRVWTGALLIAASLSACGGASDTPRGEMEARRAALQQAIADDPGAIAERVALARVAIALGDGVGAEAAVKGAIEAGAN DAALRPLLARAFELQGDGARALAALEAGPVIPEMLGEAAWVAGDVHLANGDLAAAREAYDRAVHELPRSSALWVDVARFR DASADMRGARDAVDYAIELDAANSAALAYKANLVRRAEGLTAALAWYDRALAADPGNAAALIDQAATLGDLGRYRDMLTA LRRAAVLVPREPRIHYLQAVLAARAANYRLARSLLQRTRGALDSEPGFMLLSAVVELELGGEAVAASWAERLLAEQPHNF AARRLLAAAEWAGGDAEAALAALRPLVARPDADSWSLLLAARAAAEQGRDIESAGYQARAATLDRGEAVPFAVDADYGLL TMAADAAPLDPATVIPAISADMARGNTARAIERAVRLRDANPGVADAHMLLGDAALAGGRYALAVEAYRAARNLDAGERT TLRLANALYRAGDAAGSGAAIMALRDRQPSSVAADRIAGHLAIELGHWDAAIAHFERVGSRIGDRDAVVLRELARAWAAK GDDARALVLIDRAYRLQPLNAGIMELYAALLERRGKRQAAADLRDKAAQIGR
Specific function: Unknown
COG id: COG0457
COG function: function code R; FOG: TPR repeat
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 64262; Mature: 64131
Theoretical pI: Translated: 5.97; Mature: 5.97
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGFRRVWTGALLIAASLSACGGASDTPRGEMEARRAALQQAIADDPGAIAERVALARVAI CCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH ALGDGVGAEAAVKGAIEAGANDAALRPLLARAFELQGDGARALAALEAGPVIPEMLGEAA HHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHCCHH WVAGDVHLANGDLAAAREAYDRAVHELPRSSALWVDVARFRDASADMRGARDAVDYAIEL EEECCEEECCCCHHHHHHHHHHHHHHCCCCCCCEEEHHHHCCCCCHHCCCHHHHCEEEEE DAANSAALAYKANLVRRAEGLTAALAWYDRALAADPGNAAALIDQAATLGDLGRYRDMLT CCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH ALRRAAVLVPREPRIHYLQAVLAARAANYRLARSLLQRTRGALDSEPGFMLLSAVVELEL HHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHC GGEAVAASWAERLLAEQPHNFAARRLLAAAEWAGGDAEAALAALRPLVARPDADSWSLLL CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHH AARAAAEQGRDIESAGYQARAATLDRGEAVPFAVDADYGLLTMAADAAPLDPATVIPAIS HHHHHHHCCCCCHHCCCCHHHHCCCCCCCCCEEEECCCCEEEEECCCCCCCCHHHHHHHH ADMARGNTARAIERAVRLRDANPGVADAHMLLGDAALAGGRYALAVEAYRAARNLDAGER HHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEHHHHHHHHHCCCCCCH TTLRLANALYRAGDAAGSGAAIMALRDRQPSSVAADRIAGHLAIELGHWDAAIAHFERVG HHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHCEEEEEECCHHHHHHHHHHHH SRIGDRDAVVLRELARAWAAKGDDARALVLIDRAYRLQPLNAGIMELYAALLERRGKRQA HHCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCHHCCCCCCCHHHHHHHHHHHCCCHHH AADLRDKAAQIGR HHHHHHHHHHCCC >Mature Secondary Structure GFRRVWTGALLIAASLSACGGASDTPRGEMEARRAALQQAIADDPGAIAERVALARVAI CCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH ALGDGVGAEAAVKGAIEAGANDAALRPLLARAFELQGDGARALAALEAGPVIPEMLGEAA HHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHCCHH WVAGDVHLANGDLAAAREAYDRAVHELPRSSALWVDVARFRDASADMRGARDAVDYAIEL EEECCEEECCCCHHHHHHHHHHHHHHCCCCCCCEEEHHHHCCCCCHHCCCHHHHCEEEEE DAANSAALAYKANLVRRAEGLTAALAWYDRALAADPGNAAALIDQAATLGDLGRYRDMLT CCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH ALRRAAVLVPREPRIHYLQAVLAARAANYRLARSLLQRTRGALDSEPGFMLLSAVVELEL HHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHC GGEAVAASWAERLLAEQPHNFAARRLLAAAEWAGGDAEAALAALRPLVARPDADSWSLLL CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHH AARAAAEQGRDIESAGYQARAATLDRGEAVPFAVDADYGLLTMAADAAPLDPATVIPAIS HHHHHHHCCCCCHHCCCCHHHHCCCCCCCCCEEEECCCCEEEEECCCCCCCCHHHHHHHH ADMARGNTARAIERAVRLRDANPGVADAHMLLGDAALAGGRYALAVEAYRAARNLDAGER HHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEHHHHHHHHHCCCCCCH TTLRLANALYRAGDAAGSGAAIMALRDRQPSSVAADRIAGHLAIELGHWDAAIAHFERVG HHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHCEEEEEECCHHHHHHHHHHHH SRIGDRDAVVLRELARAWAAKGDDARALVLIDRAYRLQPLNAGIMELYAALLERRGKRQA HHCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCHHCCCCCCCHHHHHHHHHHHCCCHHH AADLRDKAAQIGR HHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA