| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is epsL [H]
Identifier: 103486438
GI number: 103486438
Start: 970619
End: 972007
Strand: Direct
Name: epsL [H]
Synonym: Sala_0948
Alternate gene names: 103486438
Gene position: 970619-972007 (Clockwise)
Preceding gene: 103486434
Following gene: 103486439
Centisome position: 29.02
GC content: 66.74
Gene sequence:
>1389_bases ATGATCCGGCTGTTCAAACATTATGTCCCGCACGCGGTCGTCTGGCTCGCGCTGATCGAGTTTTGCGCGCTGCTCGGCGC GGCCGAGGGGGCGTGGCATCTTTATGCCTGGCAGGCGGGGTTCGACGCCGGGCCGCTGGGCGAGCGCGCGCTGCCCTTGC TGACCTTTGCCACCGCCAATTCACTCGCGATGATGGCAACCGGAATGTATGGTGGCGAAGGGCTGCGCTCGATGCGCTTT GCCACCGCGCGGCTGCTCGCCGCGATTTCGCTCGGCGTGATCTTTCTGTCCGTGCTGGGCTTCCTGTTGCCGACCGCGAC CCTGTGGCGCGCGAACAGCCTTTACGCGATGGGGATTGCGATCGCGGCGCTGTTCCTGATCCGGCTGGCGCTCACCCAGT CGGCGGGGACCGATGCCTTTCGCCGCCGCATCCTCGTGCTTGGCGCCGGACCGCGCGCGGCCCGGCTCGCCGCGCTGGCC GCGACGCCGGGCAGCGGGCTCGACATCGTCGGCTTTGTCGCGATGAGCGCGACCGAGACCACCGTGGCGGGCGCCGTGCC GCGACAGGAGATTGCCAGTCTTTCCGACCATGTCGTCGCGCTCGGCGCGGGCGAGGTGGTGCTGGCGCTCGAGGAGCGGC GCAAGGCGTTGCCGCTCGCCGACCTGCTGCGCGTCAAGACGACGGGCGTGCATGTCAACGACATCGCGAGCTTTATCGAG CGTGAGACCGGGCGCGTCGACCTGGCGACCACCAATCCCAGCGGGCTGATCTTTTCGGACGGCTTTTCGGCGGGGCAGCG GATTTCGAAGGTCGGCAAGCGGTTGTTCGACATCGCCGCGAGCCTGATCGTGCTGGTGATCGGCCTGCCGCTGATGATCG TCGCGGGCATTGCGGTGAAGCTCGACAGCCGCGGGCCGGTTTTTTACCGCCAGCCGCGCGTCGGGCTGTTCGGCCAGCCC TATGACATCTTCAAGATCCGCTCGATGCGCACCGACGCGGAGGCCGAAGGCAAGGCGGTGTGGGCGAGCGAGAACGACCC CAGGATCACGCGCGTCGGGCGGGTCATCCGCAAGCTGCGTATCGACGAACTGCCGCAGCTCTGGTGCGTGCTGAAAGGCG ACATGAGTTTCGTCGGCCCGCGTCCCGAACGGCCGAGCTTCGTCGCCGAGCTGGAAAAGGCGCTGCCCTATTATGCGGAA CGGCACATGGTGAAGCCGGGGCTGACCGGCTGGGCGCAGATCAACTATCCCTATGGCGCGTCGGTCGACGATGCGCGCGT GAAGCTGGAATATGACCTCTACTACGCCAAAAATTATTCGCCCTTCCTCGACCTTCTGATCCTGCTCCAGACCGTGCGCG TCGTGCTGTGGCCCGAGGGAGCACGCTAG
Upstream 100 bases:
>100_bases CAGGGGTTGCGAAAAAATCCTTTCGTGCCCGGACCTTTCCTCCTTGGGTAAGTGTAAAATTAACCGACAGTTGACGCCTC GCCTCTAGTATCGAGCCGAC
Downstream 100 bases:
>100_bases CGTGGCGGCAATGGACGGCCTTTCGCAGCTTTTGTCAGGCATGGCGCTCGTCGGCTTTGCCGGAGCGGCGCTGTGGCTGC TGTTGCGGCCCCGCGCGCGC
Product: undecaprenyl-phosphate galactosephosphotransferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 462; Mature: 462
Protein sequence:
>462_residues MIRLFKHYVPHAVVWLALIEFCALLGAAEGAWHLYAWQAGFDAGPLGERALPLLTFATANSLAMMATGMYGGEGLRSMRF ATARLLAAISLGVIFLSVLGFLLPTATLWRANSLYAMGIAIAALFLIRLALTQSAGTDAFRRRILVLGAGPRAARLAALA ATPGSGLDIVGFVAMSATETTVAGAVPRQEIASLSDHVVALGAGEVVLALEERRKALPLADLLRVKTTGVHVNDIASFIE RETGRVDLATTNPSGLIFSDGFSAGQRISKVGKRLFDIAASLIVLVIGLPLMIVAGIAVKLDSRGPVFYRQPRVGLFGQP YDIFKIRSMRTDAEAEGKAVWASENDPRITRVGRVIRKLRIDELPQLWCVLKGDMSFVGPRPERPSFVAELEKALPYYAE RHMVKPGLTGWAQINYPYGASVDDARVKLEYDLYYAKNYSPFLDLLILLQTVRVVLWPEGAR
Sequences:
>Translated_462_residues MIRLFKHYVPHAVVWLALIEFCALLGAAEGAWHLYAWQAGFDAGPLGERALPLLTFATANSLAMMATGMYGGEGLRSMRF ATARLLAAISLGVIFLSVLGFLLPTATLWRANSLYAMGIAIAALFLIRLALTQSAGTDAFRRRILVLGAGPRAARLAALA ATPGSGLDIVGFVAMSATETTVAGAVPRQEIASLSDHVVALGAGEVVLALEERRKALPLADLLRVKTTGVHVNDIASFIE RETGRVDLATTNPSGLIFSDGFSAGQRISKVGKRLFDIAASLIVLVIGLPLMIVAGIAVKLDSRGPVFYRQPRVGLFGQP YDIFKIRSMRTDAEAEGKAVWASENDPRITRVGRVIRKLRIDELPQLWCVLKGDMSFVGPRPERPSFVAELEKALPYYAE RHMVKPGLTGWAQINYPYGASVDDARVKLEYDLYYAKNYSPFLDLLILLQTVRVVLWPEGAR >Mature_462_residues MIRLFKHYVPHAVVWLALIEFCALLGAAEGAWHLYAWQAGFDAGPLGERALPLLTFATANSLAMMATGMYGGEGLRSMRF ATARLLAAISLGVIFLSVLGFLLPTATLWRANSLYAMGIAIAALFLIRLALTQSAGTDAFRRRILVLGAGPRAARLAALA ATPGSGLDIVGFVAMSATETTVAGAVPRQEIASLSDHVVALGAGEVVLALEERRKALPLADLLRVKTTGVHVNDIASFIE RETGRVDLATTNPSGLIFSDGFSAGQRISKVGKRLFDIAASLIVLVIGLPLMIVAGIAVKLDSRGPVFYRQPRVGLFGQP YDIFKIRSMRTDAEAEGKAVWASENDPRITRVGRVIRKLRIDELPQLWCVLKGDMSFVGPRPERPSFVAELEKALPYYAE RHMVKPGLTGWAQINYPYGASVDDARVKLEYDLYYAKNYSPFLDLLILLQTVRVVLWPEGAR
Specific function: May be involved in the production of the exopolysaccharide (EPS) component of the extracellular matrix during biofilm formation. EPS is responsible for the adhesion of chains of cells into bundles [H]
COG id: COG2148
COG function: function code M; Sugar transferases involved in lipopolysaccharide synthesis
Gene ontology:
Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial sugar transferase family [H]
Homologues:
Organism=Escherichia coli, GI1788360, Length=187, Percent_Identity=39.0374331550802, Blast_Score=143, Evalue=2e-35,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003362 [H]
Pfam domain/function: PF02397 Bac_transf [H]
EC number: NA
Molecular weight: Translated: 50221; Mature: 50221
Theoretical pI: Translated: 9.90; Mature: 9.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIRLFKHYVPHAVVWLALIEFCALLGAAEGAWHLYAWQAGFDAGPLGERALPLLTFATAN CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCEEEECCCC SLAMMATGMYGGEGLRSMRFATARLLAAISLGVIFLSVLGFLLPTATLWRANSLYAMGIA CHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCHHHHHHH IAALFLIRLALTQSAGTDAFRRRILVLGAGPRAARLAALAATPGSGLDIVGFVAMSATET HHHHHHHHHHHHCCCCCHHHHCEEEEEECCCCHHHHEEEECCCCCCCCCHHHEECCCCHH TVAGAVPRQEIASLSDHVVALGAGEVVLALEERRKALPLADLLRVKTTGVHVNDIASFIE HHHCCCCHHHHHHHHCCEEEECCCCEEEEEHHHHHHCCHHHHHHHHHCCCCHHHHHHHHH RETGRVDLATTNPSGLIFSDGFSAGQRISKVGKRLFDIAASLIVLVIGLPLMIVAGIAVK HCCCCEEEEECCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEE LDSRGPVFYRQPRVGLFGQPYDIFKIRSMRTDAEAEGKAVWASENDPRITRVGRVIRKLR ECCCCCEEEECCCCCCCCCCCHHHEEECCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHH IDELPQLWCVLKGDMSFVGPRPERPSFVAELEKALPYYAERHMVKPGLTGWAQINYPYGA HHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCHHHHHCCCCCCCCCEEEEECCCCC SVDDARVKLEYDLYYAKNYSPFLDLLILLQTVRVVLWPEGAR CCCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHEECCCCCC >Mature Secondary Structure MIRLFKHYVPHAVVWLALIEFCALLGAAEGAWHLYAWQAGFDAGPLGERALPLLTFATAN CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCEEEECCCC SLAMMATGMYGGEGLRSMRFATARLLAAISLGVIFLSVLGFLLPTATLWRANSLYAMGIA CHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCHHHHHHH IAALFLIRLALTQSAGTDAFRRRILVLGAGPRAARLAALAATPGSGLDIVGFVAMSATET HHHHHHHHHHHHCCCCCHHHHCEEEEEECCCCHHHHEEEECCCCCCCCCHHHEECCCCHH TVAGAVPRQEIASLSDHVVALGAGEVVLALEERRKALPLADLLRVKTTGVHVNDIASFIE HHHCCCCHHHHHHHHCCEEEECCCCEEEEEHHHHHHCCHHHHHHHHHCCCCHHHHHHHHH RETGRVDLATTNPSGLIFSDGFSAGQRISKVGKRLFDIAASLIVLVIGLPLMIVAGIAVK HCCCCEEEEECCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEE LDSRGPVFYRQPRVGLFGQPYDIFKIRSMRTDAEAEGKAVWASENDPRITRVGRVIRKLR ECCCCCEEEECCCCCCCCCCCHHHEEECCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHH IDELPQLWCVLKGDMSFVGPRPERPSFVAELEKALPYYAERHMVKPGLTGWAQINYPYGA HHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCHHHHHCCCCCCCCCEEEEECCCCC SVDDARVKLEYDLYYAKNYSPFLDLLILLQTVRVVLWPEGAR CCCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8969506; 9384377 [H]