Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103486425

Identifier: 103486425

GI number: 103486425

Start: 953089

End: 954375

Strand: Reverse

Name: 103486425

Synonym: Sala_0935

Alternate gene names: NA

Gene position: 954375-953089 (Counterclockwise)

Preceding gene: 103486426

Following gene: 103486423

Centisome position: 28.53

GC content: 66.98

Gene sequence:

>1287_bases
GTGCAACGCTTTCGACAGCGCCATCTGAGCGCTGCGCTCGCGACAAGTCTTTTGGCGGCATCGCCGACGTCGGCCGAAAA
TCTCTATATCGAGGCCGGACGGCTGATCGATGGCGTCTCCAGCGAGGTCCGTACCGGCCAGTGCATCACCGTCGAGGCCG
AACGCATCAAGGCGGTGGCTCCATGCGGGCCGACGCCCGATGGCGCGAAGCGGCTCGACTGGTCCGCCTTCACCGTCCTG
CCCGGCCTGATCGACCTCCACACGCACCTAGCCGACCTCGGCCAGAGCGCCGACCTCGCCGCGCCGATCAAGGCGTCGCC
CGCCGAAACCGCGCTCGTCGGCGCGCGCAACGCACGCGTGACGCTGGAAGCCGGATTTACCAGCGTGCGCGATGTCGGCA
CCTATCGCGGACTCACCGACGTCGCCTTGCGCAACGCGATCGACCGCGGCGACGTGCCGGGGCCGCGCATGTGGGTCGCG
GGCGCCTATATCACCATCCCAAAGGGCGGCGGCGAGCTCAACGGCGTCATCCCCAATGAGCAGCTACCGCCCGACATGCG
GCTGGGCGTCGCCGTGACGTCCGAGGAAGCGGCGGAAAAAGCGGCCTTCCTTCTCGATCAAGGCGCCGATTTCATCAAGA
CGATCGCCACCGGCGCGGTGCTCGCGATCGGCACCGAACCCGGCGCGCCCGAACTCACCGAGGATCAGTTGCGGGCGGTC
GTCAGGGTCGCCCACGCCCGCGGCAAGCGGGTCACCGCGCACGCCCACGGCGCCGAAGGGATCAAGACCGCTATTCGCGC
CGGGGTCGACAGCATCGAACACGCCAGCGTCGCCGACGAGGAAGCGCTGCAACTCGCAAAAAAGCACGGCACCTGGCTCG
CGATGGATATCTACAACGGCGACTATATCGACGAAATCGGGACGAAGGAGGGCTGGCCCGCCGAATATCTGCGCAAGAAC
CGCGAGACGACCGACGCCCAGCGCGCCGCCTTTCGCCGCGCGGTCGAGCTGGGGGTCAACATCGGCTATGCCACCGACGC
CGGCGTCTATCCGCACGGACTGAATGCGCGGCAATTCCGCAATATGGTTCAATATGGGATGACGCCGATGCAGGCGATTC
AGTCGGCGACGGGCCACGCCGCCGAAGAAATGGGCCGCAGCGACATCGGCGCGATCGTCCCCGGCCGCTATGCCGATTTC
GTCGCGGTAAAGGCCGACCCGCTCGCCGACATCACGGCGCTCGAGGCGATCGATCATGTTATGAAGGGCGGTGTGCTGGT
ACGCTAG

Upstream 100 bases:

>100_bases
CGGCGGGACAGCGTCCGGTGCCCGAAAGCTTTACCCACGGGACGAGCGAGCAACGCATGACCTGGCTGCGCCGCGGCCTG
CAAACGGGGGATCCGCGCCA

Downstream 100 bases:

>100_bases
GATCAGCGTGCAGCGTCGCGTGGCCCCCGTTCCTTGCCTAATATTCGACGATGATGCGGACCCGGTCGATGCCAAGCCCC
GCGGCACGGGCGATCTGTTC

Product: amidohydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 428; Mature: 428

Protein sequence:

>428_residues
MQRFRQRHLSAALATSLLAASPTSAENLYIEAGRLIDGVSSEVRTGQCITVEAERIKAVAPCGPTPDGAKRLDWSAFTVL
PGLIDLHTHLADLGQSADLAAPIKASPAETALVGARNARVTLEAGFTSVRDVGTYRGLTDVALRNAIDRGDVPGPRMWVA
GAYITIPKGGGELNGVIPNEQLPPDMRLGVAVTSEEAAEKAAFLLDQGADFIKTIATGAVLAIGTEPGAPELTEDQLRAV
VRVAHARGKRVTAHAHGAEGIKTAIRAGVDSIEHASVADEEALQLAKKHGTWLAMDIYNGDYIDEIGTKEGWPAEYLRKN
RETTDAQRAAFRRAVELGVNIGYATDAGVYPHGLNARQFRNMVQYGMTPMQAIQSATGHAAEEMGRSDIGAIVPGRYADF
VAVKADPLADITALEAIDHVMKGGVLVR

Sequences:

>Translated_428_residues
MQRFRQRHLSAALATSLLAASPTSAENLYIEAGRLIDGVSSEVRTGQCITVEAERIKAVAPCGPTPDGAKRLDWSAFTVL
PGLIDLHTHLADLGQSADLAAPIKASPAETALVGARNARVTLEAGFTSVRDVGTYRGLTDVALRNAIDRGDVPGPRMWVA
GAYITIPKGGGELNGVIPNEQLPPDMRLGVAVTSEEAAEKAAFLLDQGADFIKTIATGAVLAIGTEPGAPELTEDQLRAV
VRVAHARGKRVTAHAHGAEGIKTAIRAGVDSIEHASVADEEALQLAKKHGTWLAMDIYNGDYIDEIGTKEGWPAEYLRKN
RETTDAQRAAFRRAVELGVNIGYATDAGVYPHGLNARQFRNMVQYGMTPMQAIQSATGHAAEEMGRSDIGAIVPGRYADF
VAVKADPLADITALEAIDHVMKGGVLVR
>Mature_428_residues
MQRFRQRHLSAALATSLLAASPTSAENLYIEAGRLIDGVSSEVRTGQCITVEAERIKAVAPCGPTPDGAKRLDWSAFTVL
PGLIDLHTHLADLGQSADLAAPIKASPAETALVGARNARVTLEAGFTSVRDVGTYRGLTDVALRNAIDRGDVPGPRMWVA
GAYITIPKGGGELNGVIPNEQLPPDMRLGVAVTSEEAAEKAAFLLDQGADFIKTIATGAVLAIGTEPGAPELTEDQLRAV
VRVAHARGKRVTAHAHGAEGIKTAIRAGVDSIEHASVADEEALQLAKKHGTWLAMDIYNGDYIDEIGTKEGWPAEYLRKN
RETTDAQRAAFRRAVELGVNIGYATDAGVYPHGLNARQFRNMVQYGMTPMQAIQSATGHAAEEMGRSDIGAIVPGRYADF
VAVKADPLADITALEAIDHVMKGGVLVR

Specific function: Unknown

COG id: COG1228

COG function: function code Q; Imidazolonepropionase and related amidohydrolases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To S.coelicolor SCO1861 [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6322248, Length=335, Percent_Identity=31.9402985074627, Blast_Score=115, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006680 [H]

Pfam domain/function: PF01979 Amidohydro_1 [H]

EC number: NA

Molecular weight: Translated: 45391; Mature: 45391

Theoretical pI: Translated: 5.98; Mature: 5.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRFRQRHLSAALATSLLAASPTSAENLYIEAGRLIDGVSSEVRTGQCITVEAERIKAVA
CCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHCCCHHHCCCCEEEEEHHHEEEEC
PCGPTPDGAKRLDWSAFTVLPGLIDLHTHLADLGQSADLAAPIKASPAETALVGARNARV
CCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHEEECCCCEE
TLEAGFTSVRDVGTYRGLTDVALRNAIDRGDVPGPRMWVAGAYITIPKGGGELNGVIPNE
EEECCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCC
QLPPDMRLGVAVTSEEAAEKAAFLLDQGADFIKTIATGAVLAIGTEPGAPELTEDQLRAV
CCCCCCEEEEEECCHHHHHHHHHHHHCCHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHH
VRVAHARGKRVTAHAHGAEGIKTAIRAGVDSIEHASVADEEALQLAKKHGTWLAMDIYNG
HHHHHHCCCEEEEECCCHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHCCCEEEEEECCC
DYIDEIGTKEGWPAEYLRKNRETTDAQRAAFRRAVELGVNIGYATDAGVYPHGLNARQFR
CHHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH
NMVQYGMTPMQAIQSATGHAAEEMGRSDIGAIVPGRYADFVAVKADPLADITALEAIDHV
HHHHHCCCHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHH
MKGGVLVR
HHCCEECC
>Mature Secondary Structure
MQRFRQRHLSAALATSLLAASPTSAENLYIEAGRLIDGVSSEVRTGQCITVEAERIKAVA
CCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHCCCHHHCCCCEEEEEHHHEEEEC
PCGPTPDGAKRLDWSAFTVLPGLIDLHTHLADLGQSADLAAPIKASPAETALVGARNARV
CCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHEEECCCCEE
TLEAGFTSVRDVGTYRGLTDVALRNAIDRGDVPGPRMWVAGAYITIPKGGGELNGVIPNE
EEECCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCC
QLPPDMRLGVAVTSEEAAEKAAFLLDQGADFIKTIATGAVLAIGTEPGAPELTEDQLRAV
CCCCCCEEEEEECCHHHHHHHHHHHHCCHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHH
VRVAHARGKRVTAHAHGAEGIKTAIRAGVDSIEHASVADEEALQLAKKHGTWLAMDIYNG
HHHHHHCCCEEEEECCCHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHCCCEEEEEECCC
DYIDEIGTKEGWPAEYLRKNRETTDAQRAAFRRAVELGVNIGYATDAGVYPHGLNARQFR
CHHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH
NMVQYGMTPMQAIQSATGHAAEEMGRSDIGAIVPGRYADFVAVKADPLADITALEAIDHV
HHHHHCCCHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHH
MKGGVLVR
HHCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]