Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103486397

Identifier: 103486397

GI number: 103486397

Start: 916574

End: 917908

Strand: Reverse

Name: 103486397

Synonym: Sala_0907

Alternate gene names: NA

Gene position: 917908-916574 (Counterclockwise)

Preceding gene: 103486398

Following gene: 103486394

Centisome position: 27.44

GC content: 68.31

Gene sequence:

>1335_bases
ATGCTCCGTTTCGATCTGGTCATCCGCAACGCACGAACGCAGGACGGACGCGCGGTCGACGTCGGGATATGCGAGGGCCG
GATCGCGGCAATGGACGAGCGCGTCTCCGGCAAGGGGCCGGAATATGACGCGGCGGGGCAGATCCTGGGGCCGGGTTTAC
ACGACCATCACCTGCATCTCCTCGCCGCCGCGGCGCGGCGGGAGTCGGTCGATCTGTCCGGCTGCCGGAACGCCGACGCG
ATTGTCGATCGGCTGCGACGTGCGACGGGCACGCCGGTCACCTGGGTGCGCGCGATCGGCTATGACGAGCGCGTGGCAGG
CCTGCCCGACCGGGCGGTGCTTGATGCCTGGCTACCGGACCGCCCACTGCGGATACAGGATCGCACCGGGGGCTATTGGC
TGTTGAACAGCGCGGGGGTGAGGCGACTGGGCGGCCCACCCTTTCCCGCCTGTGTCGAACGATCGGCGGATGGCGAACCG
AACGGACGAATATGGCGCGGCGACGCCTGGCTGCGCGGACGGATCGGCGGCCAGCCGCCGTCGCTCGCGGCGCTTGGCGC
GACGCTGGCGCGCTGGGGCGTTACGGCTGTTACCGATGCCGGTGCTTCAAACGGTGCCGCCGAAGCCGCGCTGCTTGCCG
GTGCATTGCCCCAGCGGCTGACCATCATGGGCACGGAGGCGCTTCCCGCTGGTGAGGGATATCGGCTCGGGGCTGTCAAG
CTGCTGCTCGACGAAAACGACCTGCCCCCGCTCGCGCAACTCGCCGCCCGGATCGATGCAGCGCGCCGTTTGGGTCGGCC
TGTCGCCGCCCATTGCGTCACGCTGGGCGAACTGCTGTTTTACCTCGGCGCGCTCGACCAGGCGGGCGGAACCAAGCCGG
GGGACCGGATCGAACATGGCGGAAGGATCGCCTACAGCCTGATCGACGATATTGCGGCTGCCGGCCTGATCGTCGTGACC
CAGCCCAATTTCATCCACGATCGCGGCGACCGTTATCGCGCCCAGATGCAGGATGATGAATTGGGCGATCTTTACCGGCT
GGGCTCGTTGATCCGTGCGGGTGTTGCGATGCGCGGCGGATCCGACGCGCCTTATGGTGAGCTCAATCCGTGGATCGCCC
TGCGCGCCGCGACCGATCGCCGGACGCAAAGGGGGCACGTTATCGGCATTGATGAAGCCATCGGCCGCGAAGCCGCGCTG
GCGCTGTATGAGGCGGGGGCGCTGCACATTGGCGGTCCGGCGGACCTGATGCTGTACGATTGGCCGCGCGATCCCGGTGC
GCTGGGCCATGTCGGCCTGACCGTCATCGGCGGCGACATCGTCTGGCAGGCCTGA

Upstream 100 bases:

>100_bases
CCGCCACCCTGGCCCTCGAAGCCCTGGCTGCGGGGCAATGCGGCGTGATCGACATCGCGCTGGCGCGAACCGCCGCCCAT
TTTGCGCGGATCGTCGCATG

Downstream 100 bases:

>100_bases
CCTTCAATCGCGGACCAGCAGCATCGCCCCCGCAAGCGGGCCACCGGCGGTCGAGGTCGCGCAGACGCGGGGCTCGCCCG
CGACCTGCCGCGCACCACCG

Product: amidohydrolase 3

Products: NA

Alternate protein names: Amidohydrolase; Amidohydrolase Family Protein; Amidohydrolase Family

Number of amino acids: Translated: 444; Mature: 444

Protein sequence:

>444_residues
MLRFDLVIRNARTQDGRAVDVGICEGRIAAMDERVSGKGPEYDAAGQILGPGLHDHHLHLLAAAARRESVDLSGCRNADA
IVDRLRRATGTPVTWVRAIGYDERVAGLPDRAVLDAWLPDRPLRIQDRTGGYWLLNSAGVRRLGGPPFPACVERSADGEP
NGRIWRGDAWLRGRIGGQPPSLAALGATLARWGVTAVTDAGASNGAAEAALLAGALPQRLTIMGTEALPAGEGYRLGAVK
LLLDENDLPPLAQLAARIDAARRLGRPVAAHCVTLGELLFYLGALDQAGGTKPGDRIEHGGRIAYSLIDDIAAAGLIVVT
QPNFIHDRGDRYRAQMQDDELGDLYRLGSLIRAGVAMRGGSDAPYGELNPWIALRAATDRRTQRGHVIGIDEAIGREAAL
ALYEAGALHIGGPADLMLYDWPRDPGALGHVGLTVIGGDIVWQA

Sequences:

>Translated_444_residues
MLRFDLVIRNARTQDGRAVDVGICEGRIAAMDERVSGKGPEYDAAGQILGPGLHDHHLHLLAAAARRESVDLSGCRNADA
IVDRLRRATGTPVTWVRAIGYDERVAGLPDRAVLDAWLPDRPLRIQDRTGGYWLLNSAGVRRLGGPPFPACVERSADGEP
NGRIWRGDAWLRGRIGGQPPSLAALGATLARWGVTAVTDAGASNGAAEAALLAGALPQRLTIMGTEALPAGEGYRLGAVK
LLLDENDLPPLAQLAARIDAARRLGRPVAAHCVTLGELLFYLGALDQAGGTKPGDRIEHGGRIAYSLIDDIAAAGLIVVT
QPNFIHDRGDRYRAQMQDDELGDLYRLGSLIRAGVAMRGGSDAPYGELNPWIALRAATDRRTQRGHVIGIDEAIGREAAL
ALYEAGALHIGGPADLMLYDWPRDPGALGHVGLTVIGGDIVWQA
>Mature_444_residues
MLRFDLVIRNARTQDGRAVDVGICEGRIAAMDERVSGKGPEYDAAGQILGPGLHDHHLHLLAAAARRESVDLSGCRNADA
IVDRLRRATGTPVTWVRAIGYDERVAGLPDRAVLDAWLPDRPLRIQDRTGGYWLLNSAGVRRLGGPPFPACVERSADGEP
NGRIWRGDAWLRGRIGGQPPSLAALGATLARWGVTAVTDAGASNGAAEAALLAGALPQRLTIMGTEALPAGEGYRLGAVK
LLLDENDLPPLAQLAARIDAARRLGRPVAAHCVTLGELLFYLGALDQAGGTKPGDRIEHGGRIAYSLIDDIAAAGLIVVT
QPNFIHDRGDRYRAQMQDDELGDLYRLGSLIRAGVAMRGGSDAPYGELNPWIALRAATDRRTQRGHVIGIDEAIGREAAL
ALYEAGALHIGGPADLMLYDWPRDPGALGHVGLTVIGGDIVWQA

Specific function: Unknown

COG id: COG1574

COG function: function code R; Predicted metal-dependent hydrolase with the TIM-barrel fold

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 47218; Mature: 47218

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRFDLVIRNARTQDGRAVDVGICEGRIAAMDERVSGKGPEYDAAGQILGPGLHDHHLHL
CEEEEEEEECCCCCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHH
LAAAARRESVDLSGCRNADAIVDRLRRATGTPVTWVRAIGYDERVAGLPDRAVLDAWLPD
HHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCEEEHEECCCCHHHCCCCCHHHHHHCCCC
RPLRIQDRTGGYWLLNSAGVRRLGGPPFPACVERSADGEPNGRIWRGDAWLRGRIGGQPP
CCEEEEECCCCEEEEECCCCHHCCCCCCHHHHCCCCCCCCCCEEEECCCEEECCCCCCCC
SLAALGATLARWGVTAVTDAGASNGAAEAALLAGALPQRLTIMGTEALPAGEGYRLGAVK
CHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEEEE
LLLDENDLPPLAQLAARIDAARRLGRPVAAHCVTLGELLFYLGALDQAGGTKPGDRIEHG
EEECCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCC
GRIAYSLIDDIAAAGLIVVTQPNFIHDRGDRYRAQMQDDELGDLYRLGSLIRAGVAMRGG
CEEHHHHHHHHHHCCEEEEECCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHCCCC
SDAPYGELNPWIALRAATDRRTQRGHVIGIDEAIGREAALALYEAGALHIGGPADLMLYD
CCCCCCCCCCEEEEEECCCCCCCCCCEEECHHHHCCHHHHHHHCCCEEEECCCCCEEEEE
WPRDPGALGHVGLTVIGGDIVWQA
CCCCCCCCCCCEEEEECCEEEECC
>Mature Secondary Structure
MLRFDLVIRNARTQDGRAVDVGICEGRIAAMDERVSGKGPEYDAAGQILGPGLHDHHLHL
CEEEEEEEECCCCCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHH
LAAAARRESVDLSGCRNADAIVDRLRRATGTPVTWVRAIGYDERVAGLPDRAVLDAWLPD
HHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCEEEHEECCCCHHHCCCCCHHHHHHCCCC
RPLRIQDRTGGYWLLNSAGVRRLGGPPFPACVERSADGEPNGRIWRGDAWLRGRIGGQPP
CCEEEEECCCCEEEEECCCCHHCCCCCCHHHHCCCCCCCCCCEEEECCCEEECCCCCCCC
SLAALGATLARWGVTAVTDAGASNGAAEAALLAGALPQRLTIMGTEALPAGEGYRLGAVK
CHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEEEE
LLLDENDLPPLAQLAARIDAARRLGRPVAAHCVTLGELLFYLGALDQAGGTKPGDRIEHG
EEECCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCC
GRIAYSLIDDIAAAGLIVVTQPNFIHDRGDRYRAQMQDDELGDLYRLGSLIRAGVAMRGG
CEEHHHHHHHHHHCCEEEEECCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHCCCC
SDAPYGELNPWIALRAATDRRTQRGHVIGIDEAIGREAALALYEAGALHIGGPADLMLYD
CCCCCCCCCCEEEEEECCCCCCCCCCEEECHHHHCCHHHHHHHCCCEEEECCCCCEEEEE
WPRDPGALGHVGLTVIGGDIVWQA
CCCCCCCCCCCEEEEECCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA