| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486397
Identifier: 103486397
GI number: 103486397
Start: 916574
End: 917908
Strand: Reverse
Name: 103486397
Synonym: Sala_0907
Alternate gene names: NA
Gene position: 917908-916574 (Counterclockwise)
Preceding gene: 103486398
Following gene: 103486394
Centisome position: 27.44
GC content: 68.31
Gene sequence:
>1335_bases ATGCTCCGTTTCGATCTGGTCATCCGCAACGCACGAACGCAGGACGGACGCGCGGTCGACGTCGGGATATGCGAGGGCCG GATCGCGGCAATGGACGAGCGCGTCTCCGGCAAGGGGCCGGAATATGACGCGGCGGGGCAGATCCTGGGGCCGGGTTTAC ACGACCATCACCTGCATCTCCTCGCCGCCGCGGCGCGGCGGGAGTCGGTCGATCTGTCCGGCTGCCGGAACGCCGACGCG ATTGTCGATCGGCTGCGACGTGCGACGGGCACGCCGGTCACCTGGGTGCGCGCGATCGGCTATGACGAGCGCGTGGCAGG CCTGCCCGACCGGGCGGTGCTTGATGCCTGGCTACCGGACCGCCCACTGCGGATACAGGATCGCACCGGGGGCTATTGGC TGTTGAACAGCGCGGGGGTGAGGCGACTGGGCGGCCCACCCTTTCCCGCCTGTGTCGAACGATCGGCGGATGGCGAACCG AACGGACGAATATGGCGCGGCGACGCCTGGCTGCGCGGACGGATCGGCGGCCAGCCGCCGTCGCTCGCGGCGCTTGGCGC GACGCTGGCGCGCTGGGGCGTTACGGCTGTTACCGATGCCGGTGCTTCAAACGGTGCCGCCGAAGCCGCGCTGCTTGCCG GTGCATTGCCCCAGCGGCTGACCATCATGGGCACGGAGGCGCTTCCCGCTGGTGAGGGATATCGGCTCGGGGCTGTCAAG CTGCTGCTCGACGAAAACGACCTGCCCCCGCTCGCGCAACTCGCCGCCCGGATCGATGCAGCGCGCCGTTTGGGTCGGCC TGTCGCCGCCCATTGCGTCACGCTGGGCGAACTGCTGTTTTACCTCGGCGCGCTCGACCAGGCGGGCGGAACCAAGCCGG GGGACCGGATCGAACATGGCGGAAGGATCGCCTACAGCCTGATCGACGATATTGCGGCTGCCGGCCTGATCGTCGTGACC CAGCCCAATTTCATCCACGATCGCGGCGACCGTTATCGCGCCCAGATGCAGGATGATGAATTGGGCGATCTTTACCGGCT GGGCTCGTTGATCCGTGCGGGTGTTGCGATGCGCGGCGGATCCGACGCGCCTTATGGTGAGCTCAATCCGTGGATCGCCC TGCGCGCCGCGACCGATCGCCGGACGCAAAGGGGGCACGTTATCGGCATTGATGAAGCCATCGGCCGCGAAGCCGCGCTG GCGCTGTATGAGGCGGGGGCGCTGCACATTGGCGGTCCGGCGGACCTGATGCTGTACGATTGGCCGCGCGATCCCGGTGC GCTGGGCCATGTCGGCCTGACCGTCATCGGCGGCGACATCGTCTGGCAGGCCTGA
Upstream 100 bases:
>100_bases CCGCCACCCTGGCCCTCGAAGCCCTGGCTGCGGGGCAATGCGGCGTGATCGACATCGCGCTGGCGCGAACCGCCGCCCAT TTTGCGCGGATCGTCGCATG
Downstream 100 bases:
>100_bases CCTTCAATCGCGGACCAGCAGCATCGCCCCCGCAAGCGGGCCACCGGCGGTCGAGGTCGCGCAGACGCGGGGCTCGCCCG CGACCTGCCGCGCACCACCG
Product: amidohydrolase 3
Products: NA
Alternate protein names: Amidohydrolase; Amidohydrolase Family Protein; Amidohydrolase Family
Number of amino acids: Translated: 444; Mature: 444
Protein sequence:
>444_residues MLRFDLVIRNARTQDGRAVDVGICEGRIAAMDERVSGKGPEYDAAGQILGPGLHDHHLHLLAAAARRESVDLSGCRNADA IVDRLRRATGTPVTWVRAIGYDERVAGLPDRAVLDAWLPDRPLRIQDRTGGYWLLNSAGVRRLGGPPFPACVERSADGEP NGRIWRGDAWLRGRIGGQPPSLAALGATLARWGVTAVTDAGASNGAAEAALLAGALPQRLTIMGTEALPAGEGYRLGAVK LLLDENDLPPLAQLAARIDAARRLGRPVAAHCVTLGELLFYLGALDQAGGTKPGDRIEHGGRIAYSLIDDIAAAGLIVVT QPNFIHDRGDRYRAQMQDDELGDLYRLGSLIRAGVAMRGGSDAPYGELNPWIALRAATDRRTQRGHVIGIDEAIGREAAL ALYEAGALHIGGPADLMLYDWPRDPGALGHVGLTVIGGDIVWQA
Sequences:
>Translated_444_residues MLRFDLVIRNARTQDGRAVDVGICEGRIAAMDERVSGKGPEYDAAGQILGPGLHDHHLHLLAAAARRESVDLSGCRNADA IVDRLRRATGTPVTWVRAIGYDERVAGLPDRAVLDAWLPDRPLRIQDRTGGYWLLNSAGVRRLGGPPFPACVERSADGEP NGRIWRGDAWLRGRIGGQPPSLAALGATLARWGVTAVTDAGASNGAAEAALLAGALPQRLTIMGTEALPAGEGYRLGAVK LLLDENDLPPLAQLAARIDAARRLGRPVAAHCVTLGELLFYLGALDQAGGTKPGDRIEHGGRIAYSLIDDIAAAGLIVVT QPNFIHDRGDRYRAQMQDDELGDLYRLGSLIRAGVAMRGGSDAPYGELNPWIALRAATDRRTQRGHVIGIDEAIGREAAL ALYEAGALHIGGPADLMLYDWPRDPGALGHVGLTVIGGDIVWQA >Mature_444_residues MLRFDLVIRNARTQDGRAVDVGICEGRIAAMDERVSGKGPEYDAAGQILGPGLHDHHLHLLAAAARRESVDLSGCRNADA IVDRLRRATGTPVTWVRAIGYDERVAGLPDRAVLDAWLPDRPLRIQDRTGGYWLLNSAGVRRLGGPPFPACVERSADGEP NGRIWRGDAWLRGRIGGQPPSLAALGATLARWGVTAVTDAGASNGAAEAALLAGALPQRLTIMGTEALPAGEGYRLGAVK LLLDENDLPPLAQLAARIDAARRLGRPVAAHCVTLGELLFYLGALDQAGGTKPGDRIEHGGRIAYSLIDDIAAAGLIVVT QPNFIHDRGDRYRAQMQDDELGDLYRLGSLIRAGVAMRGGSDAPYGELNPWIALRAATDRRTQRGHVIGIDEAIGREAAL ALYEAGALHIGGPADLMLYDWPRDPGALGHVGLTVIGGDIVWQA
Specific function: Unknown
COG id: COG1574
COG function: function code R; Predicted metal-dependent hydrolase with the TIM-barrel fold
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47218; Mature: 47218
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLRFDLVIRNARTQDGRAVDVGICEGRIAAMDERVSGKGPEYDAAGQILGPGLHDHHLHL CEEEEEEEECCCCCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHH LAAAARRESVDLSGCRNADAIVDRLRRATGTPVTWVRAIGYDERVAGLPDRAVLDAWLPD HHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCEEEHEECCCCHHHCCCCCHHHHHHCCCC RPLRIQDRTGGYWLLNSAGVRRLGGPPFPACVERSADGEPNGRIWRGDAWLRGRIGGQPP CCEEEEECCCCEEEEECCCCHHCCCCCCHHHHCCCCCCCCCCEEEECCCEEECCCCCCCC SLAALGATLARWGVTAVTDAGASNGAAEAALLAGALPQRLTIMGTEALPAGEGYRLGAVK CHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEEEE LLLDENDLPPLAQLAARIDAARRLGRPVAAHCVTLGELLFYLGALDQAGGTKPGDRIEHG EEECCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCC GRIAYSLIDDIAAAGLIVVTQPNFIHDRGDRYRAQMQDDELGDLYRLGSLIRAGVAMRGG CEEHHHHHHHHHHCCEEEEECCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHCCCC SDAPYGELNPWIALRAATDRRTQRGHVIGIDEAIGREAALALYEAGALHIGGPADLMLYD CCCCCCCCCCEEEEEECCCCCCCCCCEEECHHHHCCHHHHHHHCCCEEEECCCCCEEEEE WPRDPGALGHVGLTVIGGDIVWQA CCCCCCCCCCCEEEEECCEEEECC >Mature Secondary Structure MLRFDLVIRNARTQDGRAVDVGICEGRIAAMDERVSGKGPEYDAAGQILGPGLHDHHLHL CEEEEEEEECCCCCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHH LAAAARRESVDLSGCRNADAIVDRLRRATGTPVTWVRAIGYDERVAGLPDRAVLDAWLPD HHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCEEEHEECCCCHHHCCCCCHHHHHHCCCC RPLRIQDRTGGYWLLNSAGVRRLGGPPFPACVERSADGEPNGRIWRGDAWLRGRIGGQPP CCEEEEECCCCEEEEECCCCHHCCCCCCHHHHCCCCCCCCCCEEEECCCEEECCCCCCCC SLAALGATLARWGVTAVTDAGASNGAAEAALLAGALPQRLTIMGTEALPAGEGYRLGAVK CHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEEEE LLLDENDLPPLAQLAARIDAARRLGRPVAAHCVTLGELLFYLGALDQAGGTKPGDRIEHG EEECCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCC GRIAYSLIDDIAAAGLIVVTQPNFIHDRGDRYRAQMQDDELGDLYRLGSLIRAGVAMRGG CEEHHHHHHHHHHCCEEEEECCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHCCCC SDAPYGELNPWIALRAATDRRTQRGHVIGIDEAIGREAALALYEAGALHIGGPADLMLYD CCCCCCCCCCEEEEEECCCCCCCCCCEEECHHHHCCHHHHHHHCCCEEEECCCCCEEEEE WPRDPGALGHVGLTVIGGDIVWQA CCCCCCCCCCCEEEEECCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA