Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103486394

Identifier: 103486394

GI number: 103486394

Start: 913565

End: 914878

Strand: Reverse

Name: 103486394

Synonym: Sala_0904

Alternate gene names: NA

Gene position: 914878-913565 (Counterclockwise)

Preceding gene: 103486397

Following gene: 103486393

Centisome position: 27.35

GC content: 59.67

Gene sequence:

>1314_bases
ATGCAGATGGACGATATGATCATCATCAGCGTCGACGATCATGCGATCGAGCCCCCCGAGGCCTTCATCCGCCATTATCC
GGCCGGAAAGAAGGATCGCGCCCCGCACATCGTCCAGGACAATGGCAAGGACATCTGGCTGTGGAACGGACAGCGTTACC
CGACCATCGGCCTGAATGCCGTGGTCGGCCGCCCGCGCAGCGAATATGGCATGGAACCGAGCGCCTTCGATCAGCTTCGC
CCCGGCACCTATGACCCCAAGCTGCGCGTCGATGACATGAACGCCAACGGCGTGCTCGCTTCGCTGAACTTCCCCACCAT
GCCCGGCTTTGCCGGCGGCACCTTTGTCGGCATGGCCCAGAAGGCGCCCGACGAAGCGCTGCTCGCCTGCCGCGCCTGGA
ACGACTGGCATGTCCAGGAATGGTGCGCCGCCGCGCCGGGACGCTTCATCCCGATGTGCCTCGTTCCGATGTGGGACATG
GACGAAACCCTGAAAGAGCTGAAGCGGATGAGCGACCTTGGCGTTCATGCCGTAAGTTTTTCGGACAATCCCGCCAACAT
CGGGCTGCCCAGCATCCACAATGAATATTGGGAGCCTTTCTGGGCTGCCTGTTCCGATTACAAGATGGTGATCAACTGCC
ATATCGGTACCGGCGCGCGCGCAATGCACCCGTCGAGCGAAAGCCCGATCGATGCCTGGATCACCGCAATGCCGATTTCG
ATCGCCAATTCGGCAGCCGACTGGACCTTTGCGACATTCTGGCAACGCTATCCCGAATTGCGAATGGCGCTGTCGGAGGG
GGGAATCGGCTGGATTCCCTATTTCCTGGAACGTGCCGATTTCACCCACGAACATCATCATGAATGGACCCACACCGATT
TCCGCGGCGAACGACCCTCCGACCTGTTCAAACGACACATCATCTGCTGTTTCATCGACGACCAGTTCGGGGTGAAGAAT
CTGGAATATATGAACGAGGACATGGTCGCTTACGAATGCGACTATCCGCATTCGGATACGGTGTGGCCCAACGTCCCGGA
ATATCTTTGGGCGTCGGTCAACGGCCTGCCCAGGGAAACGATCGACAAGATCACGCACAAGAATGTGATGCGCGAATATG
GTTTCGACGCCTTCGGCCTGAATGGCGGACGCGAAAACTGCACCGTCGCGCACCTGCGCGAACTGGGCAAGGATGTCGAT
GTCAGCCCGCGGCACAATCTGGGCGGGCTGAAAACCGAGAGCATGGACGCGATCGGCAAGGCCAAGCGCCCGGTGACGTC
GGGCGACATCGAACGCATGTTCGCATCGGCCTGA

Upstream 100 bases:

>100_bases
CCTCTCCACTTATTAAACCAGGTCATAAACCAATAGTTGACACATCGTCAATTTTTGCGAGAATGTCGACAAGAACAAGC
CAGCCGAGAGGAGAGTCGCC

Downstream 100 bases:

>100_bases
ACGATGACCAGTCTAGCCGAACGCTGTCCGGTGGCACGGGCGGGCGCCGATGCCCCGCCCGCCCCCGCGCATGTCCCGCC
CGACCTTGTGCTCGACACCC

Product: amidohydrolase 2

Products: NA

Alternate protein names: Amidase; Amidohydrolase Family Protein; Barh Protein; TIM-Barrel Fold Metal-Dependent Hydrolase; Metal-Dependent Amidohydrolase; Amidohydrolase 2 Protein; Hydrolase; Aminocarboxymuconate-Semialdehyde Decarboxylase; Amidohydrolase Family; Minocarboxymuconate-Semialdehyde Decarboxylase.

Number of amino acids: Translated: 437; Mature: 437

Protein sequence:

>437_residues
MQMDDMIIISVDDHAIEPPEAFIRHYPAGKKDRAPHIVQDNGKDIWLWNGQRYPTIGLNAVVGRPRSEYGMEPSAFDQLR
PGTYDPKLRVDDMNANGVLASLNFPTMPGFAGGTFVGMAQKAPDEALLACRAWNDWHVQEWCAAAPGRFIPMCLVPMWDM
DETLKELKRMSDLGVHAVSFSDNPANIGLPSIHNEYWEPFWAACSDYKMVINCHIGTGARAMHPSSESPIDAWITAMPIS
IANSAADWTFATFWQRYPELRMALSEGGIGWIPYFLERADFTHEHHHEWTHTDFRGERPSDLFKRHIICCFIDDQFGVKN
LEYMNEDMVAYECDYPHSDTVWPNVPEYLWASVNGLPRETIDKITHKNVMREYGFDAFGLNGGRENCTVAHLRELGKDVD
VSPRHNLGGLKTESMDAIGKAKRPVTSGDIERMFASA

Sequences:

>Translated_437_residues
MQMDDMIIISVDDHAIEPPEAFIRHYPAGKKDRAPHIVQDNGKDIWLWNGQRYPTIGLNAVVGRPRSEYGMEPSAFDQLR
PGTYDPKLRVDDMNANGVLASLNFPTMPGFAGGTFVGMAQKAPDEALLACRAWNDWHVQEWCAAAPGRFIPMCLVPMWDM
DETLKELKRMSDLGVHAVSFSDNPANIGLPSIHNEYWEPFWAACSDYKMVINCHIGTGARAMHPSSESPIDAWITAMPIS
IANSAADWTFATFWQRYPELRMALSEGGIGWIPYFLERADFTHEHHHEWTHTDFRGERPSDLFKRHIICCFIDDQFGVKN
LEYMNEDMVAYECDYPHSDTVWPNVPEYLWASVNGLPRETIDKITHKNVMREYGFDAFGLNGGRENCTVAHLRELGKDVD
VSPRHNLGGLKTESMDAIGKAKRPVTSGDIERMFASA
>Mature_437_residues
MQMDDMIIISVDDHAIEPPEAFIRHYPAGKKDRAPHIVQDNGKDIWLWNGQRYPTIGLNAVVGRPRSEYGMEPSAFDQLR
PGTYDPKLRVDDMNANGVLASLNFPTMPGFAGGTFVGMAQKAPDEALLACRAWNDWHVQEWCAAAPGRFIPMCLVPMWDM
DETLKELKRMSDLGVHAVSFSDNPANIGLPSIHNEYWEPFWAACSDYKMVINCHIGTGARAMHPSSESPIDAWITAMPIS
IANSAADWTFATFWQRYPELRMALSEGGIGWIPYFLERADFTHEHHHEWTHTDFRGERPSDLFKRHIICCFIDDQFGVKN
LEYMNEDMVAYECDYPHSDTVWPNVPEYLWASVNGLPRETIDKITHKNVMREYGFDAFGLNGGRENCTVAHLRELGKDVD
VSPRHNLGGLKTESMDAIGKAKRPVTSGDIERMFASA

Specific function: Unknown

COG id: COG2159

COG function: function code R; Predicted metal-dependent hydrolase of the TIM-barrel fold

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 49454; Mature: 49454

Theoretical pI: Translated: 5.18; Mature: 5.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQMDDMIIISVDDHAIEPPEAFIRHYPAGKKDRAPHIVQDNGKDIWLWNGQRYPTIGLNA
CCCCCEEEEEECCCCCCCHHHHHHHCCCCCCCCCCCEEECCCCEEEEECCCCCCCCCCHH
VVGRPRSEYGMEPSAFDQLRPGTYDPKLRVDDMNANGVLASLNFPTMPGFAGGTFVGMAQ
EECCCCHHHCCCCHHHHHCCCCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCCEEECCC
KAPDEALLACRAWNDWHVQEWCAAAPGRFIPMCLVPMWDMDETLKELKRMSDLGVHAVSF
CCCCHHEEEEECCCCCCHHHHHHCCCCCEEHEEECCCCCHHHHHHHHHHHHHCCEEEEEE
SDNPANIGLPSIHNEYWEPFWAACSDYKMVINCHIGTGARAMHPSSESPIDAWITAMPIS
CCCCCCCCCCCHHHHHCCHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHH
IANSAADWTFATFWQRYPELRMALSEGGIGWIPYFLERADFTHEHHHEWTHTDFRGERPS
HCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHCCCCCCCCCCCCCHH
DLFKRHIICCFIDDQFGVKNLEYMNEDMVAYECDYPHSDTVWPNVPEYLWASVNGLPRET
HHHHCCEEEEEECCCCCCCHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHCCCCCHHH
IDKITHKNVMREYGFDAFGLNGGRENCTVAHLRELGKDVDVSPRHNLGGLKTESMDAIGK
HHHHHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
AKRPVTSGDIERMFASA
CCCCCCCHHHHHHHHCC
>Mature Secondary Structure
MQMDDMIIISVDDHAIEPPEAFIRHYPAGKKDRAPHIVQDNGKDIWLWNGQRYPTIGLNA
CCCCCEEEEEECCCCCCCHHHHHHHCCCCCCCCCCCEEECCCCEEEEECCCCCCCCCCHH
VVGRPRSEYGMEPSAFDQLRPGTYDPKLRVDDMNANGVLASLNFPTMPGFAGGTFVGMAQ
EECCCCHHHCCCCHHHHHCCCCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCCEEECCC
KAPDEALLACRAWNDWHVQEWCAAAPGRFIPMCLVPMWDMDETLKELKRMSDLGVHAVSF
CCCCHHEEEEECCCCCCHHHHHHCCCCCEEHEEECCCCCHHHHHHHHHHHHHCCEEEEEE
SDNPANIGLPSIHNEYWEPFWAACSDYKMVINCHIGTGARAMHPSSESPIDAWITAMPIS
CCCCCCCCCCCHHHHHCCHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHH
IANSAADWTFATFWQRYPELRMALSEGGIGWIPYFLERADFTHEHHHEWTHTDFRGERPS
HCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHCCCCCCCCCCCCCHH
DLFKRHIICCFIDDQFGVKNLEYMNEDMVAYECDYPHSDTVWPNVPEYLWASVNGLPRET
HHHHCCEEEEEECCCCCCCHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHCCCCCHHH
IDKITHKNVMREYGFDAFGLNGGRENCTVAHLRELGKDVDVSPRHNLGGLKTESMDAIGK
HHHHHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
AKRPVTSGDIERMFASA
CCCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA