| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486394
Identifier: 103486394
GI number: 103486394
Start: 913565
End: 914878
Strand: Reverse
Name: 103486394
Synonym: Sala_0904
Alternate gene names: NA
Gene position: 914878-913565 (Counterclockwise)
Preceding gene: 103486397
Following gene: 103486393
Centisome position: 27.35
GC content: 59.67
Gene sequence:
>1314_bases ATGCAGATGGACGATATGATCATCATCAGCGTCGACGATCATGCGATCGAGCCCCCCGAGGCCTTCATCCGCCATTATCC GGCCGGAAAGAAGGATCGCGCCCCGCACATCGTCCAGGACAATGGCAAGGACATCTGGCTGTGGAACGGACAGCGTTACC CGACCATCGGCCTGAATGCCGTGGTCGGCCGCCCGCGCAGCGAATATGGCATGGAACCGAGCGCCTTCGATCAGCTTCGC CCCGGCACCTATGACCCCAAGCTGCGCGTCGATGACATGAACGCCAACGGCGTGCTCGCTTCGCTGAACTTCCCCACCAT GCCCGGCTTTGCCGGCGGCACCTTTGTCGGCATGGCCCAGAAGGCGCCCGACGAAGCGCTGCTCGCCTGCCGCGCCTGGA ACGACTGGCATGTCCAGGAATGGTGCGCCGCCGCGCCGGGACGCTTCATCCCGATGTGCCTCGTTCCGATGTGGGACATG GACGAAACCCTGAAAGAGCTGAAGCGGATGAGCGACCTTGGCGTTCATGCCGTAAGTTTTTCGGACAATCCCGCCAACAT CGGGCTGCCCAGCATCCACAATGAATATTGGGAGCCTTTCTGGGCTGCCTGTTCCGATTACAAGATGGTGATCAACTGCC ATATCGGTACCGGCGCGCGCGCAATGCACCCGTCGAGCGAAAGCCCGATCGATGCCTGGATCACCGCAATGCCGATTTCG ATCGCCAATTCGGCAGCCGACTGGACCTTTGCGACATTCTGGCAACGCTATCCCGAATTGCGAATGGCGCTGTCGGAGGG GGGAATCGGCTGGATTCCCTATTTCCTGGAACGTGCCGATTTCACCCACGAACATCATCATGAATGGACCCACACCGATT TCCGCGGCGAACGACCCTCCGACCTGTTCAAACGACACATCATCTGCTGTTTCATCGACGACCAGTTCGGGGTGAAGAAT CTGGAATATATGAACGAGGACATGGTCGCTTACGAATGCGACTATCCGCATTCGGATACGGTGTGGCCCAACGTCCCGGA ATATCTTTGGGCGTCGGTCAACGGCCTGCCCAGGGAAACGATCGACAAGATCACGCACAAGAATGTGATGCGCGAATATG GTTTCGACGCCTTCGGCCTGAATGGCGGACGCGAAAACTGCACCGTCGCGCACCTGCGCGAACTGGGCAAGGATGTCGAT GTCAGCCCGCGGCACAATCTGGGCGGGCTGAAAACCGAGAGCATGGACGCGATCGGCAAGGCCAAGCGCCCGGTGACGTC GGGCGACATCGAACGCATGTTCGCATCGGCCTGA
Upstream 100 bases:
>100_bases CCTCTCCACTTATTAAACCAGGTCATAAACCAATAGTTGACACATCGTCAATTTTTGCGAGAATGTCGACAAGAACAAGC CAGCCGAGAGGAGAGTCGCC
Downstream 100 bases:
>100_bases ACGATGACCAGTCTAGCCGAACGCTGTCCGGTGGCACGGGCGGGCGCCGATGCCCCGCCCGCCCCCGCGCATGTCCCGCC CGACCTTGTGCTCGACACCC
Product: amidohydrolase 2
Products: NA
Alternate protein names: Amidase; Amidohydrolase Family Protein; Barh Protein; TIM-Barrel Fold Metal-Dependent Hydrolase; Metal-Dependent Amidohydrolase; Amidohydrolase 2 Protein; Hydrolase; Aminocarboxymuconate-Semialdehyde Decarboxylase; Amidohydrolase Family; Minocarboxymuconate-Semialdehyde Decarboxylase.
Number of amino acids: Translated: 437; Mature: 437
Protein sequence:
>437_residues MQMDDMIIISVDDHAIEPPEAFIRHYPAGKKDRAPHIVQDNGKDIWLWNGQRYPTIGLNAVVGRPRSEYGMEPSAFDQLR PGTYDPKLRVDDMNANGVLASLNFPTMPGFAGGTFVGMAQKAPDEALLACRAWNDWHVQEWCAAAPGRFIPMCLVPMWDM DETLKELKRMSDLGVHAVSFSDNPANIGLPSIHNEYWEPFWAACSDYKMVINCHIGTGARAMHPSSESPIDAWITAMPIS IANSAADWTFATFWQRYPELRMALSEGGIGWIPYFLERADFTHEHHHEWTHTDFRGERPSDLFKRHIICCFIDDQFGVKN LEYMNEDMVAYECDYPHSDTVWPNVPEYLWASVNGLPRETIDKITHKNVMREYGFDAFGLNGGRENCTVAHLRELGKDVD VSPRHNLGGLKTESMDAIGKAKRPVTSGDIERMFASA
Sequences:
>Translated_437_residues MQMDDMIIISVDDHAIEPPEAFIRHYPAGKKDRAPHIVQDNGKDIWLWNGQRYPTIGLNAVVGRPRSEYGMEPSAFDQLR PGTYDPKLRVDDMNANGVLASLNFPTMPGFAGGTFVGMAQKAPDEALLACRAWNDWHVQEWCAAAPGRFIPMCLVPMWDM DETLKELKRMSDLGVHAVSFSDNPANIGLPSIHNEYWEPFWAACSDYKMVINCHIGTGARAMHPSSESPIDAWITAMPIS IANSAADWTFATFWQRYPELRMALSEGGIGWIPYFLERADFTHEHHHEWTHTDFRGERPSDLFKRHIICCFIDDQFGVKN LEYMNEDMVAYECDYPHSDTVWPNVPEYLWASVNGLPRETIDKITHKNVMREYGFDAFGLNGGRENCTVAHLRELGKDVD VSPRHNLGGLKTESMDAIGKAKRPVTSGDIERMFASA >Mature_437_residues MQMDDMIIISVDDHAIEPPEAFIRHYPAGKKDRAPHIVQDNGKDIWLWNGQRYPTIGLNAVVGRPRSEYGMEPSAFDQLR PGTYDPKLRVDDMNANGVLASLNFPTMPGFAGGTFVGMAQKAPDEALLACRAWNDWHVQEWCAAAPGRFIPMCLVPMWDM DETLKELKRMSDLGVHAVSFSDNPANIGLPSIHNEYWEPFWAACSDYKMVINCHIGTGARAMHPSSESPIDAWITAMPIS IANSAADWTFATFWQRYPELRMALSEGGIGWIPYFLERADFTHEHHHEWTHTDFRGERPSDLFKRHIICCFIDDQFGVKN LEYMNEDMVAYECDYPHSDTVWPNVPEYLWASVNGLPRETIDKITHKNVMREYGFDAFGLNGGRENCTVAHLRELGKDVD VSPRHNLGGLKTESMDAIGKAKRPVTSGDIERMFASA
Specific function: Unknown
COG id: COG2159
COG function: function code R; Predicted metal-dependent hydrolase of the TIM-barrel fold
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 49454; Mature: 49454
Theoretical pI: Translated: 5.18; Mature: 5.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 4.6 %Met (Translated Protein) 6.6 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 4.6 %Met (Mature Protein) 6.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQMDDMIIISVDDHAIEPPEAFIRHYPAGKKDRAPHIVQDNGKDIWLWNGQRYPTIGLNA CCCCCEEEEEECCCCCCCHHHHHHHCCCCCCCCCCCEEECCCCEEEEECCCCCCCCCCHH VVGRPRSEYGMEPSAFDQLRPGTYDPKLRVDDMNANGVLASLNFPTMPGFAGGTFVGMAQ EECCCCHHHCCCCHHHHHCCCCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCCEEECCC KAPDEALLACRAWNDWHVQEWCAAAPGRFIPMCLVPMWDMDETLKELKRMSDLGVHAVSF CCCCHHEEEEECCCCCCHHHHHHCCCCCEEHEEECCCCCHHHHHHHHHHHHHCCEEEEEE SDNPANIGLPSIHNEYWEPFWAACSDYKMVINCHIGTGARAMHPSSESPIDAWITAMPIS CCCCCCCCCCCHHHHHCCHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHH IANSAADWTFATFWQRYPELRMALSEGGIGWIPYFLERADFTHEHHHEWTHTDFRGERPS HCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHCCCCCCCCCCCCCHH DLFKRHIICCFIDDQFGVKNLEYMNEDMVAYECDYPHSDTVWPNVPEYLWASVNGLPRET HHHHCCEEEEEECCCCCCCHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHCCCCCHHH IDKITHKNVMREYGFDAFGLNGGRENCTVAHLRELGKDVDVSPRHNLGGLKTESMDAIGK HHHHHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH AKRPVTSGDIERMFASA CCCCCCCHHHHHHHHCC >Mature Secondary Structure MQMDDMIIISVDDHAIEPPEAFIRHYPAGKKDRAPHIVQDNGKDIWLWNGQRYPTIGLNA CCCCCEEEEEECCCCCCCHHHHHHHCCCCCCCCCCCEEECCCCEEEEECCCCCCCCCCHH VVGRPRSEYGMEPSAFDQLRPGTYDPKLRVDDMNANGVLASLNFPTMPGFAGGTFVGMAQ EECCCCHHHCCCCHHHHHCCCCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCCEEECCC KAPDEALLACRAWNDWHVQEWCAAAPGRFIPMCLVPMWDMDETLKELKRMSDLGVHAVSF CCCCHHEEEEECCCCCCHHHHHHCCCCCEEHEEECCCCCHHHHHHHHHHHHHCCEEEEEE SDNPANIGLPSIHNEYWEPFWAACSDYKMVINCHIGTGARAMHPSSESPIDAWITAMPIS CCCCCCCCCCCHHHHHCCHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHH IANSAADWTFATFWQRYPELRMALSEGGIGWIPYFLERADFTHEHHHEWTHTDFRGERPS HCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHCCCCCCCCCCCCCHH DLFKRHIICCFIDDQFGVKNLEYMNEDMVAYECDYPHSDTVWPNVPEYLWASVNGLPRET HHHHCCEEEEEECCCCCCCHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHCCCCCHHH IDKITHKNVMREYGFDAFGLNGGRENCTVAHLRELGKDVDVSPRHNLGGLKTESMDAIGK HHHHHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH AKRPVTSGDIERMFASA CCCCCCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA