| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486395
Identifier: 103486395
GI number: 103486395
Start: 914982
End: 915389
Strand: Direct
Name: 103486395
Synonym: Sala_0905
Alternate gene names: NA
Gene position: 914982-915389 (Clockwise)
Preceding gene: 103486390
Following gene: 103486396
Centisome position: 27.35
GC content: 62.75
Gene sequence:
>408_bases ATGCTGACGCGAACCCTTCCGGTGATCGACCGGGACAATGAAGCTTTCTGGACCTGGGGGCGCGAGGGGAAGCTTGCCAT CCATCGCTGCGCGAATTGCGCCTGTTTCGTGCATCCGCCGGTCCCGTTCTGTCCCTGTTGCGAAAGCCGCGACGTCGCGC CGCAGCCTGTGTCGGGGCGCGGCCGAATCGTTACCTTCACCGTCAATCACAAGCCCTGGGTGCCTGATATTTCCGCGCCC TATGTCCTTGCGCTCGTGGCGATCGAGGAACAGGACGATGTGCGCCTTGCCACCAACATCATCGGCTGCGCGGCCGAAGA TGTGCGCTTCGACATGGAGGTGGAGGTCGTTTTCGAGGCGGCTGAGGACCTGTGGATCCCGCTTTTTCGTCCGGTGCCGT CGGCATGA
Upstream 100 bases:
>100_bases GACTCTCCTCTCGGCTGGCTTGTTCTTGTCGACATTCTCGCAAAAATTGACGATGTGTCAACTATTGGTTTATGACCTGG TTTAATAAGTGGAGAGGCCG
Downstream 100 bases:
>100_bases CCCGCTTCGCCGAGAAAAATGTCGCTATCACCGGCATCGGCATGTCGGACGTGTCGCGCGGCGCGGCGAAGTCGGCGCTG GCGCTCACGGTCGATGCGGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 135; Mature: 135
Protein sequence:
>135_residues MLTRTLPVIDRDNEAFWTWGREGKLAIHRCANCACFVHPPVPFCPCCESRDVAPQPVSGRGRIVTFTVNHKPWVPDISAP YVLALVAIEEQDDVRLATNIIGCAAEDVRFDMEVEVVFEAAEDLWIPLFRPVPSA
Sequences:
>Translated_135_residues MLTRTLPVIDRDNEAFWTWGREGKLAIHRCANCACFVHPPVPFCPCCESRDVAPQPVSGRGRIVTFTVNHKPWVPDISAP YVLALVAIEEQDDVRLATNIIGCAAEDVRFDMEVEVVFEAAEDLWIPLFRPVPSA >Mature_135_residues MLTRTLPVIDRDNEAFWTWGREGKLAIHRCANCACFVHPPVPFCPCCESRDVAPQPVSGRGRIVTFTVNHKPWVPDISAP YVLALVAIEEQDDVRLATNIIGCAAEDVRFDMEVEVVFEAAEDLWIPLFRPVPSA
Specific function: Unknown
COG id: COG1545
COG function: function code R; Predicted nucleic-acid-binding protein containing a Zn-ribbon
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15104; Mature: 15104
Theoretical pI: Translated: 4.59; Mature: 4.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
5.2 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 6.7 %Cys+Met (Translated Protein) 5.2 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 6.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTRTLPVIDRDNEAFWTWGREGKLAIHRCANCACFVHPPVPFCPCCESRDVAPQPVSGR CCCCCCCEEECCCCEEEEECCCCCEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCC GRIVTFTVNHKPWVPDISAPYVLALVAIEEQDDVRLATNIIGCAAEDVRFDMEVEVVFEA CEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCEEEEHHHEECCCCCEEECEEEEEEEEC AEDLWIPLFRPVPSA CCCCEEEEECCCCCC >Mature Secondary Structure MLTRTLPVIDRDNEAFWTWGREGKLAIHRCANCACFVHPPVPFCPCCESRDVAPQPVSGR CCCCCCCEEECCCCEEEEECCCCCEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCC GRIVTFTVNHKPWVPDISAPYVLALVAIEEQDDVRLATNIIGCAAEDVRFDMEVEVVFEA CEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCEEEEHHHEECCCCCEEECEEEEEEEEC AEDLWIPLFRPVPSA CCCCEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA