Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103486396

Identifier: 103486396

GI number: 103486396

Start: 915386

End: 916570

Strand: Direct

Name: 103486396

Synonym: Sala_0906

Alternate gene names: NA

Gene position: 915386-916570 (Clockwise)

Preceding gene: 103486395

Following gene: 103486402

Centisome position: 27.36

GC content: 63.8

Gene sequence:

>1185_bases
ATGACCCGCTTCGCCGAGAAAAATGTCGCTATCACCGGCATCGGCATGTCGGACGTGTCGCGCGGCGCGGCGAAGTCGGC
GCTGGCGCTCACGGTCGATGCGGCGCTGGAAGCGATCGCCGACGCCGGACTGACGCGCGCCGAGATCGACGGGATCGCCA
CCTGGCCCGGTGAACGCGCCGACGGTTCGGGTTTTTCCCCGGTCGGCAGCGCGGCGCTCCAGGACGCCTTGCGGCTGGAG
GTTGGATGGTATGCGGGGGGAGGGGAGGCGCCGGGGCAATATGGCGCCGTCTTCAACGCGATCGGTGCGATAACCGCGGG
CTTATGTCGCAACGTCCTCATCTTTCGCACCATGTATGAAGCGACGGCGCGCAAGAGCTTCTATGCCAATTCGCTGCTGC
GCGAGGGACAGCGGCAGGCGGGCCCCTTTGCCTGGTATGCACCCTATTATACCTATTCGACAGCTTTGCAGCAGGCGCTG
TTCTTCAATCTTTATGTTCACAAAAGCGGCATCCGGCCCGATCAGGTCGGACAGATTGCGGTGGGCCAGCGTCGCAACGC
TGCGCTCAATCCCAAGGCGATCTATCGCACGCCGATCACCCTCGACGATTATCTGGCGTCACCGCTCATCGCGACGCCGC
TGCGTCTTTATGATTGCGACGTCCCCATCGACGGCGCCGTTGCCATTATCGTGTCGCGTATGGACGTCGCACGCACGCTC
AAAAATCCGCCGGTGCGTATCGAGGCGATCGGATCGTCGATGCGCTATCGCAACAGCTGGACGCAGCTCGATGCGCTCGA
CACCCAGGCGCAACCGAAAGTGGCGGAGATGATGTGGAGCCGAACCGACCTGAAACCCGTCGATGTCGACATCGCCCAGC
TTTACGACGGCTTCAGCTACCACACCATCAACTGGCTGGAAAATTTCGGTTTTTGCGAGCGCTATGGCGCAAAGGATTTT
ATCGAGGGCGGCAGGCGTATCGCGCTCGATGGCGACCTGCCGGTGAATACGGGCGGGGGCGCGCTGTCTGCCGGACGCCT
TCATGCCTATGGCGCTGTGCACGAAACCTGCATCCAGCTTTGGGGCCGCGGTGGTGCGCGGCAGGTCGCGGGCGAGCCCC
GCGTCTGCGCGACCTCGACCGCCGGTGGCCCGCTTGCGGGGGCGATGCTGCTGGTCCGCGATTGA

Upstream 100 bases:

>100_bases
GCTGCGCGGCCGAAGATGTGCGCTTCGACATGGAGGTGGAGGTCGTTTTCGAGGCGGCTGAGGACCTGTGGATCCCGCTT
TTTCGTCCGGTGCCGTCGGC

Downstream 100 bases:

>100_bases
AGGTCAGGCCTGCCAGACGATGTCGCCGCCGATGACGGTCAGGCCGACATGGCCCAGCGCACCGGGATCGCGCGGCCAAT
CGTACAGCATCAGGTCCGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 394; Mature: 393

Protein sequence:

>394_residues
MTRFAEKNVAITGIGMSDVSRGAAKSALALTVDAALEAIADAGLTRAEIDGIATWPGERADGSGFSPVGSAALQDALRLE
VGWYAGGGEAPGQYGAVFNAIGAITAGLCRNVLIFRTMYEATARKSFYANSLLREGQRQAGPFAWYAPYYTYSTALQQAL
FFNLYVHKSGIRPDQVGQIAVGQRRNAALNPKAIYRTPITLDDYLASPLIATPLRLYDCDVPIDGAVAIIVSRMDVARTL
KNPPVRIEAIGSSMRYRNSWTQLDALDTQAQPKVAEMMWSRTDLKPVDVDIAQLYDGFSYHTINWLENFGFCERYGAKDF
IEGGRRIALDGDLPVNTGGGALSAGRLHAYGAVHETCIQLWGRGGARQVAGEPRVCATSTAGGPLAGAMLLVRD

Sequences:

>Translated_394_residues
MTRFAEKNVAITGIGMSDVSRGAAKSALALTVDAALEAIADAGLTRAEIDGIATWPGERADGSGFSPVGSAALQDALRLE
VGWYAGGGEAPGQYGAVFNAIGAITAGLCRNVLIFRTMYEATARKSFYANSLLREGQRQAGPFAWYAPYYTYSTALQQAL
FFNLYVHKSGIRPDQVGQIAVGQRRNAALNPKAIYRTPITLDDYLASPLIATPLRLYDCDVPIDGAVAIIVSRMDVARTL
KNPPVRIEAIGSSMRYRNSWTQLDALDTQAQPKVAEMMWSRTDLKPVDVDIAQLYDGFSYHTINWLENFGFCERYGAKDF
IEGGRRIALDGDLPVNTGGGALSAGRLHAYGAVHETCIQLWGRGGARQVAGEPRVCATSTAGGPLAGAMLLVRD
>Mature_393_residues
TRFAEKNVAITGIGMSDVSRGAAKSALALTVDAALEAIADAGLTRAEIDGIATWPGERADGSGFSPVGSAALQDALRLEV
GWYAGGGEAPGQYGAVFNAIGAITAGLCRNVLIFRTMYEATARKSFYANSLLREGQRQAGPFAWYAPYYTYSTALQQALF
FNLYVHKSGIRPDQVGQIAVGQRRNAALNPKAIYRTPITLDDYLASPLIATPLRLYDCDVPIDGAVAIIVSRMDVARTLK
NPPVRIEAIGSSMRYRNSWTQLDALDTQAQPKVAEMMWSRTDLKPVDVDIAQLYDGFSYHTINWLENFGFCERYGAKDFI
EGGRRIALDGDLPVNTGGGALSAGRLHAYGAVHETCIQLWGRGGARQVAGEPRVCATSTAGGPLAGAMLLVRD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Drosophila melanogaster, GI19921506, Length=216, Percent_Identity=27.7777777777778, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24585051, Length=216, Percent_Identity=27.3148148148148, Blast_Score=72, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002155
- InterPro:   IPR016039
- InterPro:   IPR016038
- InterPro:   IPR020617
- InterPro:   IPR020616 [H]

Pfam domain/function: PF02803 Thiolase_C; PF00108 Thiolase_N [H]

EC number: NA

Molecular weight: Translated: 42339; Mature: 42207

Theoretical pI: Translated: 7.40; Mature: 7.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRFAEKNVAITGIGMSDVSRGAAKSALALTVDAALEAIADAGLTRAEIDGIATWPGERA
CCCCCCCCEEEEECCHHHHHHHHHHHHHEEHHHHHHHHHHHCCCCHHHCCCEEECCCCCC
DGSGFSPVGSAALQDALRLEVGWYAGGGEAPGQYGAVFNAIGAITAGLCRNVLIFRTMYE
CCCCCCCCHHHHHHHHHEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ATARKSFYANSLLREGQRQAGPFAWYAPYYTYSTALQQALFFNLYVHKSGIRPDQVGQIA
HHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHEEEECCCCCCCCCCCEE
VGQRRNAALNPKAIYRTPITLDDYLASPLIATPLRLYDCDVPIDGAVAIIVSRMDVARTL
CCCCCCCCCCCCEEEECCCCHHHHHCCCHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHH
KNPPVRIEAIGSSMRYRNSWTQLDALDTQAQPKVAEMMWSRTDLKPVDVDIAQLYDGFSY
CCCCEEEEECCCCHHHCCCCCHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHCCCCC
HTINWLENFGFCERYGAKDFIEGGRRIALDGDLPVNTGGGALSAGRLHAYGAVHETCIQL
EEHHHHHHCCHHHHCCCHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
WGRGGARQVAGEPRVCATSTAGGPLAGAMLLVRD
HCCCCCCCCCCCCCEEEECCCCCCCCEEEEEEEC
>Mature Secondary Structure 
TRFAEKNVAITGIGMSDVSRGAAKSALALTVDAALEAIADAGLTRAEIDGIATWPGERA
CCCCCCCEEEEECCHHHHHHHHHHHHHEEHHHHHHHHHHHCCCCHHHCCCEEECCCCCC
DGSGFSPVGSAALQDALRLEVGWYAGGGEAPGQYGAVFNAIGAITAGLCRNVLIFRTMYE
CCCCCCCCHHHHHHHHHEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ATARKSFYANSLLREGQRQAGPFAWYAPYYTYSTALQQALFFNLYVHKSGIRPDQVGQIA
HHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHEEEECCCCCCCCCCCEE
VGQRRNAALNPKAIYRTPITLDDYLASPLIATPLRLYDCDVPIDGAVAIIVSRMDVARTL
CCCCCCCCCCCCEEEECCCCHHHHHCCCHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHH
KNPPVRIEAIGSSMRYRNSWTQLDALDTQAQPKVAEMMWSRTDLKPVDVDIAQLYDGFSY
CCCCEEEEECCCCHHHCCCCCHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHCCCCC
HTINWLENFGFCERYGAKDFIEGGRRIALDGDLPVNTGGGALSAGRLHAYGAVHETCIQL
EEHHHHHHCCHHHHCCCHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
WGRGGARQVAGEPRVCATSTAGGPLAGAMLLVRD
HCCCCCCCCCCCCCEEEECCCCCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]