| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is 103486396
Identifier: 103486396
GI number: 103486396
Start: 915386
End: 916570
Strand: Direct
Name: 103486396
Synonym: Sala_0906
Alternate gene names: NA
Gene position: 915386-916570 (Clockwise)
Preceding gene: 103486395
Following gene: 103486402
Centisome position: 27.36
GC content: 63.8
Gene sequence:
>1185_bases ATGACCCGCTTCGCCGAGAAAAATGTCGCTATCACCGGCATCGGCATGTCGGACGTGTCGCGCGGCGCGGCGAAGTCGGC GCTGGCGCTCACGGTCGATGCGGCGCTGGAAGCGATCGCCGACGCCGGACTGACGCGCGCCGAGATCGACGGGATCGCCA CCTGGCCCGGTGAACGCGCCGACGGTTCGGGTTTTTCCCCGGTCGGCAGCGCGGCGCTCCAGGACGCCTTGCGGCTGGAG GTTGGATGGTATGCGGGGGGAGGGGAGGCGCCGGGGCAATATGGCGCCGTCTTCAACGCGATCGGTGCGATAACCGCGGG CTTATGTCGCAACGTCCTCATCTTTCGCACCATGTATGAAGCGACGGCGCGCAAGAGCTTCTATGCCAATTCGCTGCTGC GCGAGGGACAGCGGCAGGCGGGCCCCTTTGCCTGGTATGCACCCTATTATACCTATTCGACAGCTTTGCAGCAGGCGCTG TTCTTCAATCTTTATGTTCACAAAAGCGGCATCCGGCCCGATCAGGTCGGACAGATTGCGGTGGGCCAGCGTCGCAACGC TGCGCTCAATCCCAAGGCGATCTATCGCACGCCGATCACCCTCGACGATTATCTGGCGTCACCGCTCATCGCGACGCCGC TGCGTCTTTATGATTGCGACGTCCCCATCGACGGCGCCGTTGCCATTATCGTGTCGCGTATGGACGTCGCACGCACGCTC AAAAATCCGCCGGTGCGTATCGAGGCGATCGGATCGTCGATGCGCTATCGCAACAGCTGGACGCAGCTCGATGCGCTCGA CACCCAGGCGCAACCGAAAGTGGCGGAGATGATGTGGAGCCGAACCGACCTGAAACCCGTCGATGTCGACATCGCCCAGC TTTACGACGGCTTCAGCTACCACACCATCAACTGGCTGGAAAATTTCGGTTTTTGCGAGCGCTATGGCGCAAAGGATTTT ATCGAGGGCGGCAGGCGTATCGCGCTCGATGGCGACCTGCCGGTGAATACGGGCGGGGGCGCGCTGTCTGCCGGACGCCT TCATGCCTATGGCGCTGTGCACGAAACCTGCATCCAGCTTTGGGGCCGCGGTGGTGCGCGGCAGGTCGCGGGCGAGCCCC GCGTCTGCGCGACCTCGACCGCCGGTGGCCCGCTTGCGGGGGCGATGCTGCTGGTCCGCGATTGA
Upstream 100 bases:
>100_bases GCTGCGCGGCCGAAGATGTGCGCTTCGACATGGAGGTGGAGGTCGTTTTCGAGGCGGCTGAGGACCTGTGGATCCCGCTT TTTCGTCCGGTGCCGTCGGC
Downstream 100 bases:
>100_bases AGGTCAGGCCTGCCAGACGATGTCGCCGCCGATGACGGTCAGGCCGACATGGCCCAGCGCACCGGGATCGCGCGGCCAAT CGTACAGCATCAGGTCCGCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 394; Mature: 393
Protein sequence:
>394_residues MTRFAEKNVAITGIGMSDVSRGAAKSALALTVDAALEAIADAGLTRAEIDGIATWPGERADGSGFSPVGSAALQDALRLE VGWYAGGGEAPGQYGAVFNAIGAITAGLCRNVLIFRTMYEATARKSFYANSLLREGQRQAGPFAWYAPYYTYSTALQQAL FFNLYVHKSGIRPDQVGQIAVGQRRNAALNPKAIYRTPITLDDYLASPLIATPLRLYDCDVPIDGAVAIIVSRMDVARTL KNPPVRIEAIGSSMRYRNSWTQLDALDTQAQPKVAEMMWSRTDLKPVDVDIAQLYDGFSYHTINWLENFGFCERYGAKDF IEGGRRIALDGDLPVNTGGGALSAGRLHAYGAVHETCIQLWGRGGARQVAGEPRVCATSTAGGPLAGAMLLVRD
Sequences:
>Translated_394_residues MTRFAEKNVAITGIGMSDVSRGAAKSALALTVDAALEAIADAGLTRAEIDGIATWPGERADGSGFSPVGSAALQDALRLE VGWYAGGGEAPGQYGAVFNAIGAITAGLCRNVLIFRTMYEATARKSFYANSLLREGQRQAGPFAWYAPYYTYSTALQQAL FFNLYVHKSGIRPDQVGQIAVGQRRNAALNPKAIYRTPITLDDYLASPLIATPLRLYDCDVPIDGAVAIIVSRMDVARTL KNPPVRIEAIGSSMRYRNSWTQLDALDTQAQPKVAEMMWSRTDLKPVDVDIAQLYDGFSYHTINWLENFGFCERYGAKDF IEGGRRIALDGDLPVNTGGGALSAGRLHAYGAVHETCIQLWGRGGARQVAGEPRVCATSTAGGPLAGAMLLVRD >Mature_393_residues TRFAEKNVAITGIGMSDVSRGAAKSALALTVDAALEAIADAGLTRAEIDGIATWPGERADGSGFSPVGSAALQDALRLEV GWYAGGGEAPGQYGAVFNAIGAITAGLCRNVLIFRTMYEATARKSFYANSLLREGQRQAGPFAWYAPYYTYSTALQQALF FNLYVHKSGIRPDQVGQIAVGQRRNAALNPKAIYRTPITLDDYLASPLIATPLRLYDCDVPIDGAVAIIVSRMDVARTLK NPPVRIEAIGSSMRYRNSWTQLDALDTQAQPKVAEMMWSRTDLKPVDVDIAQLYDGFSYHTINWLENFGFCERYGAKDFI EGGRRIALDGDLPVNTGGGALSAGRLHAYGAVHETCIQLWGRGGARQVAGEPRVCATSTAGGPLAGAMLLVRD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Drosophila melanogaster, GI19921506, Length=216, Percent_Identity=27.7777777777778, Blast_Score=74, Evalue=2e-13, Organism=Drosophila melanogaster, GI24585051, Length=216, Percent_Identity=27.3148148148148, Blast_Score=72, Evalue=7e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002155 - InterPro: IPR016039 - InterPro: IPR016038 - InterPro: IPR020617 - InterPro: IPR020616 [H]
Pfam domain/function: PF02803 Thiolase_C; PF00108 Thiolase_N [H]
EC number: NA
Molecular weight: Translated: 42339; Mature: 42207
Theoretical pI: Translated: 7.40; Mature: 7.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRFAEKNVAITGIGMSDVSRGAAKSALALTVDAALEAIADAGLTRAEIDGIATWPGERA CCCCCCCCEEEEECCHHHHHHHHHHHHHEEHHHHHHHHHHHCCCCHHHCCCEEECCCCCC DGSGFSPVGSAALQDALRLEVGWYAGGGEAPGQYGAVFNAIGAITAGLCRNVLIFRTMYE CCCCCCCCHHHHHHHHHEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH ATARKSFYANSLLREGQRQAGPFAWYAPYYTYSTALQQALFFNLYVHKSGIRPDQVGQIA HHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHEEEECCCCCCCCCCCEE VGQRRNAALNPKAIYRTPITLDDYLASPLIATPLRLYDCDVPIDGAVAIIVSRMDVARTL CCCCCCCCCCCCEEEECCCCHHHHHCCCHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHH KNPPVRIEAIGSSMRYRNSWTQLDALDTQAQPKVAEMMWSRTDLKPVDVDIAQLYDGFSY CCCCEEEEECCCCHHHCCCCCHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHCCCCC HTINWLENFGFCERYGAKDFIEGGRRIALDGDLPVNTGGGALSAGRLHAYGAVHETCIQL EEHHHHHHCCHHHHCCCHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH WGRGGARQVAGEPRVCATSTAGGPLAGAMLLVRD HCCCCCCCCCCCCCEEEECCCCCCCCEEEEEEEC >Mature Secondary Structure TRFAEKNVAITGIGMSDVSRGAAKSALALTVDAALEAIADAGLTRAEIDGIATWPGERA CCCCCCCEEEEECCHHHHHHHHHHHHHEEHHHHHHHHHHHCCCCHHHCCCEEECCCCCC DGSGFSPVGSAALQDALRLEVGWYAGGGEAPGQYGAVFNAIGAITAGLCRNVLIFRTMYE CCCCCCCCHHHHHHHHHEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH ATARKSFYANSLLREGQRQAGPFAWYAPYYTYSTALQQALFFNLYVHKSGIRPDQVGQIA HHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHEEEECCCCCCCCCCCEE VGQRRNAALNPKAIYRTPITLDDYLASPLIATPLRLYDCDVPIDGAVAIIVSRMDVARTL CCCCCCCCCCCCEEEECCCCHHHHHCCCHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHH KNPPVRIEAIGSSMRYRNSWTQLDALDTQAQPKVAEMMWSRTDLKPVDVDIAQLYDGFSY CCCCEEEEECCCCHHHCCCCCHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHCCCCC HTINWLENFGFCERYGAKDFIEGGRRIALDGDLPVNTGGGALSAGRLHAYGAVHETCIQL EEHHHHHHCCHHHHCCCHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH WGRGGARQVAGEPRVCATSTAGGPLAGAMLLVRD HCCCCCCCCCCCCCEEEECCCCCCCCEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9371463 [H]