Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103486389

Identifier: 103486389

GI number: 103486389

Start: 907914

End: 908309

Strand: Direct

Name: 103486389

Synonym: Sala_0899

Alternate gene names: NA

Gene position: 907914-908309 (Clockwise)

Preceding gene: 103486388

Following gene: 103486390

Centisome position: 27.14

GC content: 64.39

Gene sequence:

>396_bases
ATGAGACCTCTTCCCGAACTCACACCCGAAAACACCGCCTTCTGGACCGGCGGCGCGCAGGGTGAATTGTTGATCGCGCG
CTGCGACGACTGCGATCATGCCATTCATCCGCCGCAGCTCGTCTGCCCCAAATGCTGGGGCACGGCGGTAAAGAGCCGGG
CCGTCCCCGGCACCGGTACGGTCTACAGCTTTACCGTCAACCACCAGCCCTGGGCGCCGGGAATGGCGGTGCCCTTTGCC
CTCGCGGTTGTCGATGTCGATGAAGCGCCGGGCGTCCGTATTACCGCTGAGGTGGTGAACGCACCCCCCGAAAGCGTCCA
TATCGGCCAGCGGATGCGCGCGGTTTTCCACGCGATCGACGACATCTGGTTCCCGCAGTGGGAGCCCGTCCAATGA

Upstream 100 bases:

>100_bases
CGCCCTTTTCCTACGATCTCGCCGTCACGGCGATCGTCGCACTGTGCGTCGGCGCGATCCTGATCGCCTTCCTCCTTCCC
CGCTCCATCAGGGAAACGCC

Downstream 100 bases:

>100_bases
GCATCAACGCCGCGATCACCGGGGTCGGCATGTCCGACATCGGGCGAAAGACCGGGCGCCCGGCGATGCTGCATCTGGTC
GAAGCCGCGAGGCGCGCGCT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 131; Mature: 131

Protein sequence:

>131_residues
MRPLPELTPENTAFWTGGAQGELLIARCDDCDHAIHPPQLVCPKCWGTAVKSRAVPGTGTVYSFTVNHQPWAPGMAVPFA
LAVVDVDEAPGVRITAEVVNAPPESVHIGQRMRAVFHAIDDIWFPQWEPVQ

Sequences:

>Translated_131_residues
MRPLPELTPENTAFWTGGAQGELLIARCDDCDHAIHPPQLVCPKCWGTAVKSRAVPGTGTVYSFTVNHQPWAPGMAVPFA
LAVVDVDEAPGVRITAEVVNAPPESVHIGQRMRAVFHAIDDIWFPQWEPVQ
>Mature_131_residues
MRPLPELTPENTAFWTGGAQGELLIARCDDCDHAIHPPQLVCPKCWGTAVKSRAVPGTGTVYSFTVNHQPWAPGMAVPFA
LAVVDVDEAPGVRITAEVVNAPPESVHIGQRMRAVFHAIDDIWFPQWEPVQ

Specific function: Unknown

COG id: COG1545

COG function: function code R; Predicted nucleic-acid-binding protein containing a Zn-ribbon

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14305; Mature: 14305

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPLPELTPENTAFWTGGAQGELLIARCDDCDHAIHPPQLVCPKCWGTAVKSRAVPGTGT
CCCCCCCCCCCCEEEECCCCCCEEEEECCCCCCCCCCCCEECCCHHCHHHHCCCCCCCCC
VYSFTVNHQPWAPGMAVPFALAVVDVDEAPGVRITAEVVNAPPESVHIGQRMRAVFHAID
EEEEEECCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHH
DIWFPQWEPVQ
HHCCCCCCCCC
>Mature Secondary Structure
MRPLPELTPENTAFWTGGAQGELLIARCDDCDHAIHPPQLVCPKCWGTAVKSRAVPGTGT
CCCCCCCCCCCCEEEECCCCCCEEEEECCCCCCCCCCCCEECCCHHCHHHHCCCCCCCCC
VYSFTVNHQPWAPGMAVPFALAVVDVDEAPGVRITAEVVNAPPESVHIGQRMRAVFHAID
EEEEEECCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHH
DIWFPQWEPVQ
HHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA