| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486378
Identifier: 103486378
GI number: 103486378
Start: 895533
End: 896651
Strand: Reverse
Name: 103486378
Synonym: Sala_0888
Alternate gene names: NA
Gene position: 896651-895533 (Counterclockwise)
Preceding gene: 103486386
Following gene: 103486368
Centisome position: 26.8
GC content: 62.65
Gene sequence:
>1119_bases GTGAAACCCTTTGTTTTCAGCGCCGACAGCCATATCATGGAACCCGCCGACCTTTTTCTCGACGGACTCCCCGCCTCGTT GAAGGATCATGCGATCCATTCGCGCAAGGAGGGGGAGTATTTGATCACCGGGACCAGGGACAAGATTATCCATCGCCTCC GCATCGGGCAGCATCGCGAGCAGGAACTGGGGGATTCCCAGCGCAAAGGTATCCGCGAAATCCCCGGTCGCCTGGACGAT ATGGAGCTGGAAGGGATCGACGCCGAAATCTGTTTCCCTTCGCTTGGTCTGTGGCTTTACTGCCTCGAGAACGCAGAGGC CGAAGCGGCGTCGGCGCGGCTTTACAACGACTGGAACGACCGCTTTCTTGGCGCCCATCCGAACCGGTTCGTGCGGTGCG GCATGTTGCCGGTGCTCGATTTTTCAAACACGATTGCCGAGCTCGATTATCTGGCGTCAAAGGGCTTCACCGCCGCGATG CTGCCCGCCACGACGCCCGGCAATTTGCCCAAATATAATGACGAGGCGTGGGATCCGGTATTCGCGAAAGCGGCCGCCCT CGGTATCGTGTTCGTCATGCACACCGGCACCGGTCTGGAGACGGTGGTGGTCGAGCGCGGGCCCGGCGCCGCGATCATCA ACTATGCGAACCAGATGAACGACGCCCAGCGCAGCGTGATGTATCTTGTCGCGGGCGGCGTGCTCGACCGCAATCGCGGC GCGAAGGTTGCCTTTATCGAAAGCGGTGCGAGCTGGCTCGTCGCGCTTGCCGAGCGGATGGACGAGGTGTCGGTCGCGCA CGCCAAATTTGTGCGCCCCAAGCTCGACCGCGCGCCCAGCCAGATCATCGATGACCAGGTGTGGGCCAGCTTCCAGCACG ATCGCGGCTGCATCACCGCGGCCGCCGCCGGGTTGGCCGGCGCGAAGAACGTCATGTGGGGATCGGACTATCCCCATGCC GAGGGCACATTCCCGATCAGCCGCCGCGTCGTCGACGAATTGTTCGAAGGACTGGACGTCAGCGAAGCGGTCCGCCGCGA CATATTGGGCCTGAACGCCGCGCGGCTGTTCGGTATCGATCCGGTGGTGCAGACAAGCGCAACGGCGGTGGCGGCGTAA
Upstream 100 bases:
>100_bases CATGTTCGTCGATAATCCATGATATTCTTTGCTTGACTTATATAACTAGGTATCTTTTAATCGCTCAAAGATCAGACGCG AGTCGAGAGGAGATTGCCCC
Downstream 100 bases:
>100_bases CCCGCCCCGCGCTCTTCGCACGGGCCGGATGGCGCTATTCTTCGATCGGTTTCGCCGTCCGGCCCGCCATGATCGCAGCT ACGCCGCCCACCAGCAGGCA
Product: amidohydrolase 2
Products: NA
Alternate protein names: Amidase; Amidohydrolase Family Protein; 2-Amino-3-Carboxymuconate-6- Semialdehyde Decarboxylase; Barh Protein; TIM-Barrel Fold Metal-Dependent Hydrolase; Metal-Dependent Amidohydrolase; Amidohydrolase 2 Protein; Hydrolase; Aminocarboxymuconate-Semialdehyde Decarboxylase; Amidohydrolase Family; Minocarboxymuconate-Semialdehyde Decarboxylase.
Number of amino acids: Translated: 372; Mature: 372
Protein sequence:
>372_residues MKPFVFSADSHIMEPADLFLDGLPASLKDHAIHSRKEGEYLITGTRDKIIHRLRIGQHREQELGDSQRKGIREIPGRLDD MELEGIDAEICFPSLGLWLYCLENAEAEAASARLYNDWNDRFLGAHPNRFVRCGMLPVLDFSNTIAELDYLASKGFTAAM LPATTPGNLPKYNDEAWDPVFAKAAALGIVFVMHTGTGLETVVVERGPGAAIINYANQMNDAQRSVMYLVAGGVLDRNRG AKVAFIESGASWLVALAERMDEVSVAHAKFVRPKLDRAPSQIIDDQVWASFQHDRGCITAAAAGLAGAKNVMWGSDYPHA EGTFPISRRVVDELFEGLDVSEAVRRDILGLNAARLFGIDPVVQTSATAVAA
Sequences:
>Translated_372_residues MKPFVFSADSHIMEPADLFLDGLPASLKDHAIHSRKEGEYLITGTRDKIIHRLRIGQHREQELGDSQRKGIREIPGRLDD MELEGIDAEICFPSLGLWLYCLENAEAEAASARLYNDWNDRFLGAHPNRFVRCGMLPVLDFSNTIAELDYLASKGFTAAM LPATTPGNLPKYNDEAWDPVFAKAAALGIVFVMHTGTGLETVVVERGPGAAIINYANQMNDAQRSVMYLVAGGVLDRNRG AKVAFIESGASWLVALAERMDEVSVAHAKFVRPKLDRAPSQIIDDQVWASFQHDRGCITAAAAGLAGAKNVMWGSDYPHA EGTFPISRRVVDELFEGLDVSEAVRRDILGLNAARLFGIDPVVQTSATAVAA >Mature_372_residues MKPFVFSADSHIMEPADLFLDGLPASLKDHAIHSRKEGEYLITGTRDKIIHRLRIGQHREQELGDSQRKGIREIPGRLDD MELEGIDAEICFPSLGLWLYCLENAEAEAASARLYNDWNDRFLGAHPNRFVRCGMLPVLDFSNTIAELDYLASKGFTAAM LPATTPGNLPKYNDEAWDPVFAKAAALGIVFVMHTGTGLETVVVERGPGAAIINYANQMNDAQRSVMYLVAGGVLDRNRG AKVAFIESGASWLVALAERMDEVSVAHAKFVRPKLDRAPSQIIDDQVWASFQHDRGCITAAAAGLAGAKNVMWGSDYPHA EGTFPISRRVVDELFEGLDVSEAVRRDILGLNAARLFGIDPVVQTSATAVAA
Specific function: Unknown
COG id: COG2159
COG function: function code R; Predicted metal-dependent hydrolase of the TIM-barrel fold
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40664; Mature: 40664
Theoretical pI: Translated: 5.14; Mature: 5.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPFVFSADSHIMEPADLFLDGLPASLKDHAIHSRKEGEYLITGTRDKIIHRLRIGQHRE CCCEEECCCCCCCCHHHHHHCCCCCHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCHHH QELGDSQRKGIREIPGRLDDMELEGIDAEICFPSLGLWLYCLENAEAEAASARLYNDWND HHCCCHHHCCHHHCCCCCCCCEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCC RFLGAHPNRFVRCGMLPVLDFSNTIAELDYLASKGFTAAMLPATTPGNLPKYNDEAWDPV CCCCCCCCCEEEECCCEECCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCHH FAKAAALGIVFVMHTGTGLETVVVERGPGAAIINYANQMNDAQRSVMYLVAGGVLDRNRG HHHHHHHHEEEEEECCCCCEEEEEECCCCCEEEHHHHHHHHHHHHHHHHHCCCCEECCCC AKVAFIESGASWLVALAERMDEVSVAHAKFVRPKLDRAPSQIIDDQVWASFQHDRGCITA CEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCHHHH AAAGLAGAKNVMWGSDYPHAEGTFPISRRVVDELFEGLDVSEAVRRDILGLNAARLFGID HHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHCCCC PVVQTSATAVAA HHHHCCCHHHCC >Mature Secondary Structure MKPFVFSADSHIMEPADLFLDGLPASLKDHAIHSRKEGEYLITGTRDKIIHRLRIGQHRE CCCEEECCCCCCCCHHHHHHCCCCCHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCHHH QELGDSQRKGIREIPGRLDDMELEGIDAEICFPSLGLWLYCLENAEAEAASARLYNDWND HHCCCHHHCCHHHCCCCCCCCEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCC RFLGAHPNRFVRCGMLPVLDFSNTIAELDYLASKGFTAAMLPATTPGNLPKYNDEAWDPV CCCCCCCCCEEEECCCEECCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCHH FAKAAALGIVFVMHTGTGLETVVVERGPGAAIINYANQMNDAQRSVMYLVAGGVLDRNRG HHHHHHHHEEEEEECCCCCEEEEEECCCCCEEEHHHHHHHHHHHHHHHHHCCCCEECCCC AKVAFIESGASWLVALAERMDEVSVAHAKFVRPKLDRAPSQIIDDQVWASFQHDRGCITA CEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCHHHH AAAGLAGAKNVMWGSDYPHAEGTFPISRRVVDELFEGLDVSEAVRRDILGLNAARLFGID HHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHCCCC PVVQTSATAVAA HHHHCCCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA