| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is yohF [C]
Identifier: 103486356
GI number: 103486356
Start: 873032
End: 873541
Strand: Direct
Name: yohF [C]
Synonym: Sala_0866
Alternate gene names: 103486356
Gene position: 873032-873541 (Clockwise)
Preceding gene: 103486355
Following gene: 103486357
Centisome position: 26.1
GC content: 66.47
Gene sequence:
>510_bases ATGAACGGCTGGCTTGCCGGAAAACGCGCCCGGATCGAAGGGGACGCGCCTGCCATTACGGCGGCGATCGAGGCCGCCGG GGCGGTGCTGGTCGCCGATGGCGAAGGCGATTGCGACATCTGGGTCCACATCGCGCCGCATTCCGAAATCAAGCGCGCGC ACGAGATCGGGTACAGCGAATGGCGCGCCAACCTGGACGCCGGGCTCGACCGGCGATTTCTTGGTGCCCAGAAATTTGCC GCCGAATGCCGGAAGCGCGGGCGGGGAGGAGCTGTCCTGTTTGTCGGCGCGCCCGAACAGGCGCTGGGCGCCGATCATGC GGCGGCAGCGGGCGCGCTGGGCAATCTGACCAAGACGCTGGGCGTCGAATGGGCGCGCGACGGCATTCGGGTGAACAGCA TATTGACGCGGACCTCCGAAGAAACGCTCGGCCATCTCGCGGCCTATCTGGTCAGCGACTATGCCGCCTATGTCACCGGG GCGGTGATGGGGGTCGATCTTGATGACTGA
Upstream 100 bases:
>100_bases AGGTGATCGTGCAGGACGGTGGCGAAAGCCTGCGTAGATCGCTGATCATGCCCGACTTCATTCCGCCGCGTGAGCGGGCT GACGGCCCGTGGGGTTGGCA
Downstream 100 bases:
>100_bases TCGACTGCGTCTCGACGGACAGGCGGCGTTCGTGACCGGCGGCGGGGGCGGTATCGGCCGCGCCATTGCGATCCGGCTGG CCGAAGCAGGGGCGAATGTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 169; Mature: 169
Protein sequence:
>169_residues MNGWLAGKRARIEGDAPAITAAIEAAGAVLVADGEGDCDIWVHIAPHSEIKRAHEIGYSEWRANLDAGLDRRFLGAQKFA AECRKRGRGGAVLFVGAPEQALGADHAAAAGALGNLTKTLGVEWARDGIRVNSILTRTSEETLGHLAAYLVSDYAAYVTG AVMGVDLDD
Sequences:
>Translated_169_residues MNGWLAGKRARIEGDAPAITAAIEAAGAVLVADGEGDCDIWVHIAPHSEIKRAHEIGYSEWRANLDAGLDRRFLGAQKFA AECRKRGRGGAVLFVGAPEQALGADHAAAAGALGNLTKTLGVEWARDGIRVNSILTRTSEETLGHLAAYLVSDYAAYVTG AVMGVDLDD >Mature_169_residues MNGWLAGKRARIEGDAPAITAAIEAAGAVLVADGEGDCDIWVHIAPHSEIKRAHEIGYSEWRANLDAGLDRRFLGAQKFA AECRKRGRGGAVLFVGAPEQALGADHAAAAGALGNLTKTLGVEWARDGIRVNSILTRTSEETLGHLAAYLVSDYAAYVTG AVMGVDLDD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 1.-.-.- [C]
Molecular weight: Translated: 17754; Mature: 17754
Theoretical pI: Translated: 5.25; Mature: 5.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNGWLAGKRARIEGDAPAITAAIEAAGAVLVADGEGDCDIWVHIAPHSEIKRAHEIGYSE CCCCCCCCEEEECCCCCHHHHHHHHCCEEEEECCCCCCEEEEEECCHHHHHHHHHCCHHH WRANLDAGLDRRFLGAQKFAAECRKRGRGGAVLFVGAPEQALGADHAAAAGALGNLTKTL HHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHCCCHHHHHHHHHHHHHHH GVEWARDGIRVNSILTRTSEETLGHLAAYLVSDYAAYVTGAVMGVDLDD CCHHHCCCEEEHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHEEEECCC >Mature Secondary Structure MNGWLAGKRARIEGDAPAITAAIEAAGAVLVADGEGDCDIWVHIAPHSEIKRAHEIGYSE CCCCCCCCEEEECCCCCHHHHHHHHCCEEEEECCCCCCEEEEEECCHHHHHHHHHCCHHH WRANLDAGLDRRFLGAQKFAAECRKRGRGGAVLFVGAPEQALGADHAAAAGALGNLTKTL HHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHCCCHHHHHHHHHHHHHHH GVEWARDGIRVNSILTRTSEETLGHLAAYLVSDYAAYVTGAVMGVDLDD CCHHHCCCEEEHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA