| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486353
Identifier: 103486353
GI number: 103486353
Start: 870779
End: 871219
Strand: Reverse
Name: 103486353
Synonym: Sala_0863
Alternate gene names: NA
Gene position: 871219-870779 (Counterclockwise)
Preceding gene: 103486354
Following gene: 103486352
Centisome position: 26.04
GC content: 64.85
Gene sequence:
>441_bases ATGCCTGATCTGGCAAGCGACCGCGACGCGATCCGCGACCTTCTGGCACGCTATACCTACCACGGCGACCGGGGGCGTAT CGACGATCTGGCGGCCTGCTTTGCGCCCGACGGGGTGCTGGAATATCCGGGCGCCGCGCCATGCGGTCCGGCGGCGATCA AGGCGTCCCTGTCTTCAGGCACGCGCGACCGGCGGCTGACCTTCATCCGGCATCACATCACCAATCCGCTGATCATTGTC GATGGCGATGTCGCCACCGCGCGCAGCTATTTCTGCGTCCACAGCAATTTCGGCCCCGATCACAGCGGCACATATGACGA CCGGATCGTCCGCACCGCCGAGGGCTGGCGTTTCGCAAGGCGGCGGGTGCGGATCGACTGGCAGACCAAGGCGTCGCTGT TCCGGCCGATGGTTACGCGCCCGAATAATTTGACACCTTGA
Upstream 100 bases:
>100_bases TTCGGCGGCACAGACATGCGGGACGCCTATGTAACGCTGTCGAGTTCGGGGCGGCTCGCGAAACTGCGCTGGGACGAGCC GGGACTGGAGCTTGCATTCA
Downstream 100 bases:
>100_bases TGTCATTTTGACATTAAGGTGTCATGTCACCGCGCTTCTCCGATTTCGAACGATTCGCCGACGAGCTTGCCCGGCTGCGT GGACGGATGCGGGCGCTCTA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 146; Mature: 145
Protein sequence:
>146_residues MPDLASDRDAIRDLLARYTYHGDRGRIDDLAACFAPDGVLEYPGAAPCGPAAIKASLSSGTRDRRLTFIRHHITNPLIIV DGDVATARSYFCVHSNFGPDHSGTYDDRIVRTAEGWRFARRRVRIDWQTKASLFRPMVTRPNNLTP
Sequences:
>Translated_146_residues MPDLASDRDAIRDLLARYTYHGDRGRIDDLAACFAPDGVLEYPGAAPCGPAAIKASLSSGTRDRRLTFIRHHITNPLIIV DGDVATARSYFCVHSNFGPDHSGTYDDRIVRTAEGWRFARRRVRIDWQTKASLFRPMVTRPNNLTP >Mature_145_residues PDLASDRDAIRDLLARYTYHGDRGRIDDLAACFAPDGVLEYPGAAPCGPAAIKASLSSGTRDRRLTFIRHHITNPLIIVD GDVATARSYFCVHSNFGPDHSGTYDDRIVRTAEGWRFARRRVRIDWQTKASLFRPMVTRPNNLTP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16371; Mature: 16239
Theoretical pI: Translated: 9.23; Mature: 9.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPDLASDRDAIRDLLARYTYHGDRGRIDDLAACFAPDGVLEYPGAAPCGPAAIKASLSSG CCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHCCC TRDRRLTFIRHHITNPLIIVDGDVATARSYFCVHSNFGPDHSGTYDDRIVRTAEGWRFAR CCHHHHHHHHHHHCCCEEEEECCCCCHHEEEEEECCCCCCCCCCCCHHEEECHHHHHHHH RRVRIDWQTKASLFRPMVTRPNNLTP HHEECCCHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure PDLASDRDAIRDLLARYTYHGDRGRIDDLAACFAPDGVLEYPGAAPCGPAAIKASLSSG CCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHCCC TRDRRLTFIRHHITNPLIIVDGDVATARSYFCVHSNFGPDHSGTYDDRIVRTAEGWRFAR CCHHHHHHHHHHHCCCEEEEECCCCCHHEEEEEECCCCCCCCCCCCHHEEECHHHHHHHH RRVRIDWQTKASLFRPMVTRPNNLTP HHEECCCHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA