| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486354
Identifier: 103486354
GI number: 103486354
Start: 871212
End: 872072
Strand: Reverse
Name: 103486354
Synonym: Sala_0864
Alternate gene names: NA
Gene position: 872072-871212 (Counterclockwise)
Preceding gene: 103486360
Following gene: 103486353
Centisome position: 26.07
GC content: 64.46
Gene sequence:
>861_bases ATGGAAATCGTTGCGGATGGCCTTGCCTTTCCGGAGGGACCGGTGGTCATGGCCGATGGGTCGGTGATCGTCGTCGAGCT TGCGGGCGGGCGTATCACGCGCTGCTGGAACGGCCGCAAGGAAGTGCTGTGCGAGATCGGCGGCGGGCCCAATGGCGCCG CGATCGGTCCCGATGGCGCGCTATATGTTTGCAACAATGGCGGACTGGATCTCGACAAGTTTCAGAATGCCCGCGGTCCG GGCCATGAGGGCCGGGTCGAGCGAGTGGACCTGTCGAGCGGTCGCGCCGAACGGCTTTTCGACCATTGCGACGGTGTGGC GCTGGAGGCGCCGAACGACATTGTTTTCGACTCGGACGGGCGCATGTGGTTCACCGACCTTGGCAAGACGCATGACGGCA TCCGCACGGCGAGCGGGCTGTTCACGGCGCTTCCCGACGGTTCGCATGTCGCCGCGATCGACCGCCACGCCATCTCCTGC AACGGCATCGGCCTGTCGCCCAATGGGGCGCATGTCTATGTCGCCGACACCCATCAGGCGCGCCTTTGGCGCTACCGGCG GGCCCCCGAAGAACAGAGGCCCGAATGGGTGGCAACCGCTCCGGGGCCGGTAGGTTTCGACAGTCTGGCGGTAACGGCCG CCGGCAATATCTGTGTCGCAACGCTTTACGAGGGCGGCATTTCGACCATCACGTCCGACGGCGCAATGCACAAGTTCGGC ATTCCGGGCGAACGTTACGTTACCAACATTGCCTTCGGCGGCACAGACATGCGGGACGCCTATGTAACGCTGTCGAGTTC GGGGCGGCTCGCGAAACTGCGCTGGGACGAGCCGGGACTGGAGCTTGCATTCAATGCCTGA
Upstream 100 bases:
>100_bases GATGGGCCGGTATTGGCAAGGCTCTCTCCCTCGCGCCAAGGGTTGCGCCTTGACCCTCTGCATGTCAAGACATGACTAAC TAGGTTATATAGGAGCCGAC
Downstream 100 bases:
>100_bases TCTGGCAAGCGACCGCGACGCGATCCGCGACCTTCTGGCACGCTATACCTACCACGGCGACCGGGGGCGTATCGACGATC TGGCGGCCTGCTTTGCGCCC
Product: gluconolactonase, putative
Products: NA
Alternate protein names: SMP-30/Gluconolaconase/LRE Domain-Containing Protein; SMP-30/Gluconolaconase/LRE Domain Protein; Antibiotic Induced Protein Drp; Gluconolactonase Protein; Glconolactonase; SMP-30/Gluconolaconase/LRE-Like Region-Containing Protein
Number of amino acids: Translated: 286; Mature: 286
Protein sequence:
>286_residues MEIVADGLAFPEGPVVMADGSVIVVELAGGRITRCWNGRKEVLCEIGGGPNGAAIGPDGALYVCNNGGLDLDKFQNARGP GHEGRVERVDLSSGRAERLFDHCDGVALEAPNDIVFDSDGRMWFTDLGKTHDGIRTASGLFTALPDGSHVAAIDRHAISC NGIGLSPNGAHVYVADTHQARLWRYRRAPEEQRPEWVATAPGPVGFDSLAVTAAGNICVATLYEGGISTITSDGAMHKFG IPGERYVTNIAFGGTDMRDAYVTLSSSGRLAKLRWDEPGLELAFNA
Sequences:
>Translated_286_residues MEIVADGLAFPEGPVVMADGSVIVVELAGGRITRCWNGRKEVLCEIGGGPNGAAIGPDGALYVCNNGGLDLDKFQNARGP GHEGRVERVDLSSGRAERLFDHCDGVALEAPNDIVFDSDGRMWFTDLGKTHDGIRTASGLFTALPDGSHVAAIDRHAISC NGIGLSPNGAHVYVADTHQARLWRYRRAPEEQRPEWVATAPGPVGFDSLAVTAAGNICVATLYEGGISTITSDGAMHKFG IPGERYVTNIAFGGTDMRDAYVTLSSSGRLAKLRWDEPGLELAFNA >Mature_286_residues MEIVADGLAFPEGPVVMADGSVIVVELAGGRITRCWNGRKEVLCEIGGGPNGAAIGPDGALYVCNNGGLDLDKFQNARGP GHEGRVERVDLSSGRAERLFDHCDGVALEAPNDIVFDSDGRMWFTDLGKTHDGIRTASGLFTALPDGSHVAAIDRHAISC NGIGLSPNGAHVYVADTHQARLWRYRRAPEEQRPEWVATAPGPVGFDSLAVTAAGNICVATLYEGGISTITSDGAMHKFG IPGERYVTNIAFGGTDMRDAYVTLSSSGRLAKLRWDEPGLELAFNA
Specific function: Unknown
COG id: COG3386
COG function: function code G; Gluconolactonase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30308; Mature: 30308
Theoretical pI: Translated: 4.89; Mature: 4.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEIVADGLAFPEGPVVMADGSVIVVELAGGRITRCWNGRKEVLCEIGGGPNGAAIGPDGA CCEEECCCCCCCCCEEEECCCEEEEEECCCEEEEEECCCEEEEEEECCCCCCCEECCCCE LYVCNNGGLDLDKFQNARGPGHEGRVERVDLSSGRAERLFDHCDGVALEAPNDIVFDSDG EEEECCCCCCHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHCCCEEEECCCCEEECCCC RMWFTDLGKTHDGIRTASGLFTALPDGSHVAAIDRHAISCNGIGLSPNGAHVYVADTHQA CEEEEECCCCCCCCCCCCCEEEECCCCCEEEEEECCEEEECCCCCCCCCCEEEEEECCHH RLWRYRRAPEEQRPEWVATAPGPVGFDSLAVTAAGNICVATLYEGGISTITSDGAMHKFG HHHHHHCCCHHHCCCEEEECCCCCCCCCEEEEECCCEEEEEEECCCCEEEECCCCEEECC IPGERYVTNIAFGGTDMRDAYVTLSSSGRLAKLRWDEPGLELAFNA CCCHHEEEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECC >Mature Secondary Structure MEIVADGLAFPEGPVVMADGSVIVVELAGGRITRCWNGRKEVLCEIGGGPNGAAIGPDGA CCEEECCCCCCCCCEEEECCCEEEEEECCCEEEEEECCCEEEEEEECCCCCCCEECCCCE LYVCNNGGLDLDKFQNARGPGHEGRVERVDLSSGRAERLFDHCDGVALEAPNDIVFDSDG EEEECCCCCCHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHCCCEEEECCCCEEECCCC RMWFTDLGKTHDGIRTASGLFTALPDGSHVAAIDRHAISCNGIGLSPNGAHVYVADTHQA CEEEEECCCCCCCCCCCCCEEEECCCCCEEEEEECCEEEECCCCCCCCCCEEEEEECCHH RLWRYRRAPEEQRPEWVATAPGPVGFDSLAVTAAGNICVATLYEGGISTITSDGAMHKFG HHHHHHCCCHHHCCCEEEECCCCCCCCCEEEEECCCEEEEEEECCCCEEEECCCCEEECC IPGERYVTNIAFGGTDMRDAYVTLSSSGRLAKLRWDEPGLELAFNA CCCHHEEEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA