BacMap

Definition	Sphingopyxis alaskensis RB2256, complete genome.
Accession	NC_008048
Length	3,345,170

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The map label for this gene is fabG [H]

Identifier: 103486349

GI number: 103486349

Start: 867167

End: 867913

Strand: Reverse

Name: fabG [H]

Synonym: Sala_0859

Alternate gene names: 103486349

Gene position: 867913-867167 (Counterclockwise)

Preceding gene: 103486350

Following gene: 103486348

Centisome position: 25.95

GC content: 64.79

Gene sequence:

>747_bases
ATGACGCCCGATCCGCTGTTCGATTTCACCGGAAAGGTCGCGCTCGTCACCGGCGGGTCGCGCGGGCTTGGCTATCGGAT
GGTAAAGGCGTTTGCGGAGCGCGGCGCCGACGTCATCGTCGCCAGCCGCAAGCTGGACAATTGCGAAACCATTGCCGAAG
AATGCCGCGCGCTTGGTCGCAAAGCCCTGGCCCACAGTGCCCATTGCGGCCGCTGGGACGAGATCGACGGATTGATCGCC
GCGTCCTACGCCGCATTCGGGCGCGTCGACATTCTGGTCAACAATGCCGGAATGTCGCCGTCCTGCGCCAGCCACGAAAT
ACCGGAAAAGCTGTTCGATTCGGTGATGAACCTGAACTTCAAGGGTCCGTTCCGCCTCGCGAGCCAGATCGCGCACCGGA
TGAGCGAAGGCGATGGCGGTTGTATCATCAACGTCAGCTCGACCGGGGCATTGATGGCGCTGCCGAAAGTCGTGCCCTAT
GGCGCGGCAAAGGCGGCGCTCAATGCGATGACCGTGTCGCTCAGCCGCGAATATGGCCCGAAAGTGCGGGTGAACACGAT
CAGCCCCGGCCCCTTTCTGACCGACATCGCGGACGCCTGGGAACCATGGAAGCGGGAGGTGCAGCCCGTGGCCCTGGGAC
GCCCCGGCCGCCCCGAGGAAATCGTCACCGCCGCACTGATGCTCGCGAGCCCCTCATCCTCTTATACCACCGGCGCGCTC
GTCCGCGTGGACGGGGGGCAGCGCTGA

Upstream 100 bases:

>100_bases
TCGCCAAAGCTCATCTGAAGAATGCAACGCGCGCATCGGGCCTGTTTCCCAGCGAACATATACCGACGCGGCTGGCAGCG
ATCCGGGAAAGGAACACGGC

Downstream 100 bases:

>100_bases
TGCCCCGCGCCGTTATGGCCAGCGCACTTGGCCCCCCCGACACCTATCGGCTGGTCGAATATGATCCCGGCCCGCCGTCG
CCGAGCCAGGTTCGGATCGC

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: 3-ketoacyl-acyl carrier protein reductase [H]

Number of amino acids: Translated: 248; Mature: 247

Protein sequence:

>248_residues
MTPDPLFDFTGKVALVTGGSRGLGYRMVKAFAERGADVIVASRKLDNCETIAEECRALGRKALAHSAHCGRWDEIDGLIA
ASYAAFGRVDILVNNAGMSPSCASHEIPEKLFDSVMNLNFKGPFRLASQIAHRMSEGDGGCIINVSSTGALMALPKVVPY
GAAKAALNAMTVSLSREYGPKVRVNTISPGPFLTDIADAWEPWKREVQPVALGRPGRPEEIVTAALMLASPSSSYTTGAL
VRVDGGQR

Sequences:

>Translated_248_residues
MTPDPLFDFTGKVALVTGGSRGLGYRMVKAFAERGADVIVASRKLDNCETIAEECRALGRKALAHSAHCGRWDEIDGLIA
ASYAAFGRVDILVNNAGMSPSCASHEIPEKLFDSVMNLNFKGPFRLASQIAHRMSEGDGGCIINVSSTGALMALPKVVPY
GAAKAALNAMTVSLSREYGPKVRVNTISPGPFLTDIADAWEPWKREVQPVALGRPGRPEEIVTAALMLASPSSSYTTGAL
VRVDGGQR
>Mature_247_residues
TPDPLFDFTGKVALVTGGSRGLGYRMVKAFAERGADVIVASRKLDNCETIAEECRALGRKALAHSAHCGRWDEIDGLIAA
SYAAFGRVDILVNNAGMSPSCASHEIPEKLFDSVMNLNFKGPFRLASQIAHRMSEGDGGCIINVSSTGALMALPKVVPYG
AAKAALNAMTVSLSREYGPKVRVNTISPGPFLTDIADAWEPWKREVQPVALGRPGRPEEIVTAALMLASPSSSYTTGALV
RVDGGQR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI10190704, Length=251, Percent_Identity=33.4661354581673, Blast_Score=124, Evalue=6e-29,
Organism=Homo sapiens, GI32483357, Length=249, Percent_Identity=31.3253012048193, Blast_Score=120, Evalue=9e-28,
Organism=Homo sapiens, GI19923817, Length=251, Percent_Identity=30.2788844621514, Blast_Score=117, Evalue=7e-27,
Organism=Homo sapiens, GI5031737, Length=243, Percent_Identity=30.8641975308642, Blast_Score=108, Evalue=6e-24,
Organism=Homo sapiens, GI7705925, Length=245, Percent_Identity=30.6122448979592, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI126723191, Length=186, Percent_Identity=31.1827956989247, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI33667109, Length=192, Percent_Identity=31.7708333333333, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI126723750, Length=252, Percent_Identity=27.7777777777778, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI59889578, Length=234, Percent_Identity=31.6239316239316, Blast_Score=85, Evalue=6e-17,
Organism=Homo sapiens, GI40254992, Length=238, Percent_Identity=30.2521008403361, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI7706318, Length=200, Percent_Identity=26.5, Blast_Score=81, Evalue=9e-16,
Organism=Homo sapiens, GI4504505, Length=248, Percent_Identity=29.4354838709677, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI4758504, Length=256, Percent_Identity=27.34375, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI4503301, Length=248, Percent_Identity=28.2258064516129, Blast_Score=78, Evalue=6e-15,
Organism=Homo sapiens, GI4557649, Length=192, Percent_Identity=31.25, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI209862901, Length=177, Percent_Identity=28.8135593220339, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI19923983, Length=177, Percent_Identity=28.8135593220339, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI20149619, Length=192, Percent_Identity=31.25, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI83715985, Length=251, Percent_Identity=25.8964143426295, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI7705855, Length=248, Percent_Identity=27.4193548387097, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI40254986, Length=193, Percent_Identity=26.4248704663212, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI109715829, Length=202, Percent_Identity=29.7029702970297, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI210032110, Length=156, Percent_Identity=27.5641025641026, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI15277342, Length=250, Percent_Identity=28.8, Blast_Score=65, Evalue=4e-11,
Organism=Escherichia coli, GI1789208, Length=246, Percent_Identity=36.5853658536585, Blast_Score=127, Evalue=5e-31,
Organism=Escherichia coli, GI1790717, Length=253, Percent_Identity=29.6442687747036, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1787335, Length=243, Percent_Identity=32.0987654320988, Blast_Score=114, Evalue=6e-27,
Organism=Escherichia coli, GI2367365, Length=240, Percent_Identity=32.0833333333333, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI87082160, Length=246, Percent_Identity=33.3333333333333, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1787905, Length=240, Percent_Identity=31.6666666666667, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI87082100, Length=253, Percent_Identity=31.6205533596838, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI2367175, Length=245, Percent_Identity=30.2040816326531, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1786812, Length=256, Percent_Identity=31.640625, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI1788459, Length=245, Percent_Identity=30.2040816326531, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1789378, Length=248, Percent_Identity=28.6290322580645, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI1789057, Length=255, Percent_Identity=27.0588235294118, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787820, Length=180, Percent_Identity=27.7777777777778, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1787526, Length=192, Percent_Identity=26.5625, Blast_Score=64, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17561402, Length=248, Percent_Identity=30.6451612903226, Blast_Score=120, Evalue=5e-28,
Organism=Caenorhabditis elegans, GI115534694, Length=247, Percent_Identity=31.9838056680162, Blast_Score=114, Evalue=7e-26,
Organism=Caenorhabditis elegans, GI17560676, Length=244, Percent_Identity=28.6885245901639, Blast_Score=108, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI71994600, Length=249, Percent_Identity=29.718875502008, Blast_Score=103, Evalue=9e-23,
Organism=Caenorhabditis elegans, GI17536025, Length=256, Percent_Identity=30.078125, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17562910, Length=262, Percent_Identity=31.2977099236641, Blast_Score=100, Evalue=6e-22,
Organism=Caenorhabditis elegans, GI17536651, Length=261, Percent_Identity=28.3524904214559, Blast_Score=100, Evalue=9e-22,
Organism=Caenorhabditis elegans, GI71994604, Length=248, Percent_Identity=29.4354838709677, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17562906, Length=263, Percent_Identity=31.5589353612167, Blast_Score=97, Evalue=9e-21,
Organism=Caenorhabditis elegans, GI17560150, Length=262, Percent_Identity=31.6793893129771, Blast_Score=96, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI25147288, Length=244, Percent_Identity=31.9672131147541, Blast_Score=94, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI17555706, Length=246, Percent_Identity=32.520325203252, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI193204405, Length=264, Percent_Identity=32.1969696969697, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17562990, Length=262, Percent_Identity=30.5343511450382, Blast_Score=89, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17561272, Length=258, Percent_Identity=31.0077519379845, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17562908, Length=262, Percent_Identity=30.5343511450382, Blast_Score=88, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI17544670, Length=266, Percent_Identity=30.0751879699248, Blast_Score=88, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI17551412, Length=266, Percent_Identity=31.9548872180451, Blast_Score=87, Evalue=7e-18,
Organism=Caenorhabditis elegans, GI17559104, Length=264, Percent_Identity=30.3030303030303, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17531453, Length=259, Percent_Identity=29.7297297297297, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI72000259, Length=257, Percent_Identity=28.4046692607004, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17563726, Length=260, Percent_Identity=28.0769230769231, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17562904, Length=259, Percent_Identity=27.027027027027, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17560220, Length=265, Percent_Identity=30.9433962264151, Blast_Score=81, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17538480, Length=263, Percent_Identity=30.0380228136882, Blast_Score=81, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17538182, Length=255, Percent_Identity=28.6274509803922, Blast_Score=80, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI71997402, Length=174, Percent_Identity=30.4597701149425, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17565030, Length=271, Percent_Identity=29.520295202952, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17564282, Length=242, Percent_Identity=26.4462809917355, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17555612, Length=209, Percent_Identity=29.6650717703349, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17560332, Length=268, Percent_Identity=29.4776119402985, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71997099, Length=206, Percent_Identity=30.5825242718447, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17568967, Length=216, Percent_Identity=28.2407407407407, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI193203115, Length=240, Percent_Identity=26.25, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI193203117, Length=242, Percent_Identity=25.6198347107438, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17508895, Length=250, Percent_Identity=25.6, Blast_Score=66, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6324126, Length=252, Percent_Identity=26.1904761904762, Blast_Score=84, Evalue=3e-17,
Organism=Saccharomyces cerevisiae, GI6322861, Length=234, Percent_Identity=27.7777777777778, Blast_Score=75, Evalue=8e-15,
Organism=Drosophila melanogaster, GI21357041, Length=250, Percent_Identity=32.8, Blast_Score=128, Evalue=3e-30,
Organism=Drosophila melanogaster, GI28571526, Length=250, Percent_Identity=32.8, Blast_Score=122, Evalue=2e-28,
Organism=Drosophila melanogaster, GI23397609, Length=251, Percent_Identity=30.6772908366534, Blast_Score=116, Evalue=1e-26,
Organism=Drosophila melanogaster, GI24644339, Length=259, Percent_Identity=29.7297297297297, Blast_Score=115, Evalue=2e-26,
Organism=Drosophila melanogaster, GI24639444, Length=246, Percent_Identity=34.1463414634146, Blast_Score=109, Evalue=2e-24,
Organism=Drosophila melanogaster, GI24644337, Length=252, Percent_Identity=30.952380952381, Blast_Score=108, Evalue=4e-24,
Organism=Drosophila melanogaster, GI21355319, Length=253, Percent_Identity=28.0632411067194, Blast_Score=107, Evalue=8e-24,
Organism=Drosophila melanogaster, GI24643142, Length=246, Percent_Identity=34.1463414634146, Blast_Score=103, Evalue=1e-22,
Organism=Drosophila melanogaster, GI17737361, Length=252, Percent_Identity=28.1746031746032, Blast_Score=81, Evalue=5e-16,
Organism=Drosophila melanogaster, GI24580925, Length=194, Percent_Identity=30.4123711340206, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24640492, Length=204, Percent_Identity=25.9803921568627, Blast_Score=74, Evalue=7e-14,
Organism=Drosophila melanogaster, GI21358495, Length=194, Percent_Identity=29.8969072164948, Blast_Score=74, Evalue=8e-14,
Organism=Drosophila melanogaster, GI18859837, Length=189, Percent_Identity=31.7460317460317, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI21356301, Length=194, Percent_Identity=27.319587628866, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI21355631, Length=171, Percent_Identity=28.6549707602339, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI281364892, Length=199, Percent_Identity=25.1256281407035, Blast_Score=65, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011284
- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: =1.1.1.100 [H]

Molecular weight: Translated: 26349; Mature: 26218

Theoretical pI: Translated: 8.21; Mature: 8.21

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPDPLFDFTGKVALVTGGSRGLGYRMVKAFAERGADVIVASRKLDNCETIAEECRALGR
CCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHH
KALAHSAHCGRWDEIDGLIAASYAAFGRVDILVNNAGMSPSCASHEIPEKLFDSVMNLNF
HHHHHCCCCCCCHHHCHHHHHHHHHHCEEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCC
KGPFRLASQIAHRMSEGDGGCIINVSSTGALMALPKVVPYGAAKAALNAMTVSLSREYGP
CCHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEHHHHCCCCHHHHHHHHHHEEEHHCCCC
KVRVNTISPGPFLTDIADAWEPWKREVQPVALGRPGRPEEIVTAALMLASPSSSYTTGAL
EEEEEEECCCCHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEE
VRVDGGQR
EEECCCCC
>Mature Secondary Structure 
TPDPLFDFTGKVALVTGGSRGLGYRMVKAFAERGADVIVASRKLDNCETIAEECRALGR
CCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHH
KALAHSAHCGRWDEIDGLIAASYAAFGRVDILVNNAGMSPSCASHEIPEKLFDSVMNLNF
HHHHHCCCCCCCHHHCHHHHHHHHHHCEEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCC
KGPFRLASQIAHRMSEGDGGCIINVSSTGALMALPKVVPYGAAKAALNAMTVSLSREYGP
CCHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEHHHHCCCCHHHHHHHHHHEEEHHCCCC
KVRVNTISPGPFLTDIADAWEPWKREVQPVALGRPGRPEEIVTAALMLASPSSSYTTGAL
EEEEEEECCCCHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEE
VRVDGGQR
EEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10360571 [H]