| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is mas [H]
Identifier: 103486348
GI number: 103486348
Start: 866169
End: 867167
Strand: Reverse
Name: mas [H]
Synonym: Sala_0858
Alternate gene names: 103486348
Gene position: 867167-866169 (Counterclockwise)
Preceding gene: 103486349
Following gene: 103486340
Centisome position: 25.92
GC content: 66.17
Gene sequence:
>999_bases ATGCCCCGCGCCGTTATGGCCAGCGCACTTGGCCCCCCCGACACCTATCGGCTGGTCGAATATGATCCCGGCCCGCCGTC GCCGAGCCAGGTTCGGATCGCGATCCGCGCCACCGGTATCAGCTATGTCGATGTCTTGACGGCAGCGGGAAATTATCAGG TCAAACCGCCGCTTCCTTATATCCCCGGCAGCGAATGCGCGGGCATCGTCGAGGCCGTCGGCATGGACGTCGAAGGACTT TCTGTCGGCGACAAGGTGGTGGGCAGCGGATGGGGCGGCCTGTTCGCCGATGCCGCCAACCTTCCCGCACGAACTGTTCG GAAAATGCCCGAAACCCTGTCCTTCGAAGAAGCGGCGGTGTTCCCGGTAAGCTATGCAACCGCGCGCCATGCGCTGGTCG ATCGCGGTCGGCTGGCTGCGGGAGAGACGCTGCTGGTACTGGGAGCGGGCGGCGCCACGGGTTATGCAGCGATCCAGCTT GGCAAATATCTTGGCGCACAGGTGATCGCGTCGGCGTCGAACGCGACCAAGCGCAGCCTGGCGCGCGCGGGCGGCGCCGA TGCCGTGATCGACGCGCGCGACCCCGACTGGCGCGCGACGGTAACCGCTGCGACCGGTGGCCAGGGCGTCGATGTCGTGT TCGACCCCGTCGGAGGCGACGCAACCGACCGGGCATTCCGTTCGCTGGCTTGGAACGGACGGCATCTGGTCATCGGCTTT CCGGCAGGCATTGCGGCGCTGCGGACCAACTTGCCCTTATTGAAGGGAGCGAGCCTGATCGGAGTGGACGTGCGGCAGTT CGGCCTGTTCGAACCCGGACGGAGCGAGGCCAACCGTGATGCCATTTTCGACCTGGCGGCGGAAGGCAGGCTGCGCCCGG CGATCGCGCGAACCTATCCCCTGGAGGATTTTTGCGCCGCAATGCAGGATGCGGAGACCGGCGAAAGCGCGGGACGGATC GTGCTGACGATGGGTCAGATGTCCAGCACGCCGCGCTAG
Upstream 100 bases:
>100_bases GCCGCCCCGAGGAAATCGTCACCGCCGCACTGATGCTCGCGAGCCCCTCATCCTCTTATACCACCGGCGCGCTCGTCCGC GTGGACGGGGGGCAGCGCTG
Downstream 100 bases:
>100_bases AACGCGATGTCCGCCAACCGCCCCCGCCAATCGGGAAGCGCCGGCAATGCGTTGAAATCACGGCGAAGACGGGCAACGAG ATCGGCGACCGGTTCGACCA
Product: zinc-binding alcohol dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 332; Mature: 331
Protein sequence:
>332_residues MPRAVMASALGPPDTYRLVEYDPGPPSPSQVRIAIRATGISYVDVLTAAGNYQVKPPLPYIPGSECAGIVEAVGMDVEGL SVGDKVVGSGWGGLFADAANLPARTVRKMPETLSFEEAAVFPVSYATARHALVDRGRLAAGETLLVLGAGGATGYAAIQL GKYLGAQVIASASNATKRSLARAGGADAVIDARDPDWRATVTAATGGQGVDVVFDPVGGDATDRAFRSLAWNGRHLVIGF PAGIAALRTNLPLLKGASLIGVDVRQFGLFEPGRSEANRDAIFDLAAEGRLRPAIARTYPLEDFCAAMQDAETGESAGRI VLTMGQMSSTPR
Sequences:
>Translated_332_residues MPRAVMASALGPPDTYRLVEYDPGPPSPSQVRIAIRATGISYVDVLTAAGNYQVKPPLPYIPGSECAGIVEAVGMDVEGL SVGDKVVGSGWGGLFADAANLPARTVRKMPETLSFEEAAVFPVSYATARHALVDRGRLAAGETLLVLGAGGATGYAAIQL GKYLGAQVIASASNATKRSLARAGGADAVIDARDPDWRATVTAATGGQGVDVVFDPVGGDATDRAFRSLAWNGRHLVIGF PAGIAALRTNLPLLKGASLIGVDVRQFGLFEPGRSEANRDAIFDLAAEGRLRPAIARTYPLEDFCAAMQDAETGESAGRI VLTMGQMSSTPR >Mature_331_residues PRAVMASALGPPDTYRLVEYDPGPPSPSQVRIAIRATGISYVDVLTAAGNYQVKPPLPYIPGSECAGIVEAVGMDVEGLS VGDKVVGSGWGGLFADAANLPARTVRKMPETLSFEEAAVFPVSYATARHALVDRGRLAAGETLLVLGAGGATGYAAIQLG KYLGAQVIASASNATKRSLARAGGADAVIDARDPDWRATVTAATGGQGVDVVFDPVGGDATDRAFRSLAWNGRHLVIGFP AGIAALRTNLPLLKGASLIGVDVRQFGLFEPGRSEANRDAIFDLAAEGRLRPAIARTYPLEDFCAAMQDAETGESAGRIV LTMGQMSSTPR
Specific function: Catalyzes the elongation of N-fatty acyl-CoA with methylamalonyl-CoA (not malonyl-CoA) as the elongating agent to form mycocerosyl lipids [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 acyl carrier domain [H]
Homologues:
Organism=Homo sapiens, GI194239674, Length=329, Percent_Identity=30.3951367781155, Blast_Score=143, Evalue=2e-34, Organism=Homo sapiens, GI13236495, Length=329, Percent_Identity=30.3951367781155, Blast_Score=143, Evalue=2e-34, Organism=Homo sapiens, GI18379349, Length=312, Percent_Identity=27.5641025641026, Blast_Score=130, Evalue=1e-30, Organism=Homo sapiens, GI24308257, Length=360, Percent_Identity=26.3888888888889, Blast_Score=127, Evalue=2e-29, Organism=Homo sapiens, GI194239676, Length=329, Percent_Identity=28.8753799392097, Blast_Score=115, Evalue=8e-26, Organism=Homo sapiens, GI22538446, Length=323, Percent_Identity=27.2445820433437, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI22538444, Length=323, Percent_Identity=27.2445820433437, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI41872631, Length=315, Percent_Identity=28.5714285714286, Blast_Score=89, Evalue=6e-18, Organism=Homo sapiens, GI28557745, Length=306, Percent_Identity=30.3921568627451, Blast_Score=85, Evalue=7e-17, Organism=Homo sapiens, GI47519420, Length=331, Percent_Identity=25.9818731117825, Blast_Score=73, Evalue=4e-13, Organism=Homo sapiens, GI67078404, Length=306, Percent_Identity=25.4901960784314, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI197927207, Length=196, Percent_Identity=26.0204081632653, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI67078406, Length=298, Percent_Identity=25.1677852348993, Blast_Score=65, Evalue=8e-11, Organism=Escherichia coli, GI1790485, Length=317, Percent_Identity=29.9684542586751, Blast_Score=119, Evalue=3e-28, Organism=Escherichia coli, GI1790045, Length=326, Percent_Identity=24.2331288343558, Blast_Score=65, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17507255, Length=333, Percent_Identity=29.4294294294294, Blast_Score=106, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17536829, Length=209, Percent_Identity=32.5358851674641, Blast_Score=66, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6319520, Length=319, Percent_Identity=28.8401253918495, Blast_Score=111, Evalue=2e-25, Organism=Saccharomyces cerevisiae, GI6324486, Length=343, Percent_Identity=24.7813411078717, Blast_Score=70, Evalue=5e-13, Organism=Drosophila melanogaster, GI221330659, Length=236, Percent_Identity=28.8135593220339, Blast_Score=76, Evalue=4e-14, Organism=Drosophila melanogaster, GI19920632, Length=236, Percent_Identity=28.8135593220339, Blast_Score=76, Evalue=4e-14, Organism=Drosophila melanogaster, GI24581345, Length=338, Percent_Identity=24.2603550295858, Blast_Score=74, Evalue=2e-13, Organism=Drosophila melanogaster, GI45550423, Length=304, Percent_Identity=26.3157894736842, Blast_Score=70, Evalue=3e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001227 - InterPro: IPR009081 - InterPro: IPR014043 - InterPro: IPR016035 - InterPro: IPR013149 - InterPro: IPR013154 - InterPro: IPR000794 - InterPro: IPR011032 - InterPro: IPR018201 - InterPro: IPR014031 - InterPro: IPR014030 - InterPro: IPR016036 - InterPro: IPR016040 - InterPro: IPR006163 - InterPro: IPR020842 - InterPro: IPR020801 - InterPro: IPR020841 - InterPro: IPR020807 - InterPro: IPR020843 - InterPro: IPR013968 - InterPro: IPR006162 - InterPro: IPR016039 - InterPro: IPR016038 [H]
Pfam domain/function: PF00698 Acyl_transf_1; PF08240 ADH_N; PF00107 ADH_zinc_N; PF00109 ketoacyl-synt; PF02801 Ketoacyl-synt_C; PF08659 KR; PF00550 PP-binding [H]
EC number: =2.3.1.111 [H]
Molecular weight: Translated: 34453; Mature: 34322
Theoretical pI: Translated: 5.45; Mature: 5.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRAVMASALGPPDTYRLVEYDPGPPSPSQVRIAIRATGISYVDVLTAAGNYQVKPPLPY CCCHHHHHHCCCCCCEEEEEECCCCCCCCEEEEEEEECCCEEEEHEECCCCEEECCCCCC IPGSECAGIVEAVGMDVEGLSVGDKVVGSGWGGLFADAANLPARTVRKMPETLSFEEAAV CCCHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCHHHCCCCCCHHHHHHCHHHCCCCCCEE FPVSYATARHALVDRGRLAAGETLLVLGAGGATGYAAIQLGKYLGAQVIASASNATKRSL EEEHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHH ARAGGADAVIDARDPDWRATVTAATGGQGVDVVFDPVGGDATDRAFRSLAWNGRHLVIGF HHCCCCCEEEECCCCCCEEEEEEECCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEC PAGIAALRTNLPLLKGASLIGVDVRQFGLFEPGRSEANRDAIFDLAAEGRLRPAIARTYP CCCHHHHHHCCCHHCCCCEEEECHHHHCCCCCCCCCCCCCCEEEECCCCCCCCHHHHCCC LEDFCAAMQDAETGESAGRIVLTMGQMSSTPR HHHHHHHHHCCCCCCCCCEEEEEECCCCCCCC >Mature Secondary Structure PRAVMASALGPPDTYRLVEYDPGPPSPSQVRIAIRATGISYVDVLTAAGNYQVKPPLPY CCHHHHHHCCCCCCEEEEEECCCCCCCCEEEEEEEECCCEEEEHEECCCCEEECCCCCC IPGSECAGIVEAVGMDVEGLSVGDKVVGSGWGGLFADAANLPARTVRKMPETLSFEEAAV CCCHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCHHHCCCCCCHHHHHHCHHHCCCCCCEE FPVSYATARHALVDRGRLAAGETLLVLGAGGATGYAAIQLGKYLGAQVIASASNATKRSL EEEHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHH ARAGGADAVIDARDPDWRATVTAATGGQGVDVVFDPVGGDATDRAFRSLAWNGRHLVIGF HHCCCCCEEEECCCCCCEEEEEEECCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEC PAGIAALRTNLPLLKGASLIGVDVRQFGLFEPGRSEANRDAIFDLAAEGRLRPAIARTYP CCCHHHHHHCCCHHCCCCEEEECHHHHCCCCCCCCCCCCCCEEEECCCCCCCCHHHHCCC LEDFCAAMQDAETGESAGRIVLTMGQMSSTPR HHHHHHHHHCCCCCCCCCEEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 1527058; 12788972 [H]