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The map label for this gene is thcC [H]

Identifier: 103486335

GI number: 103486335

Start: 853274

End: 853591

Strand: Direct

Name: thcC [H]

Synonym: Sala_0845

Alternate gene names: 103486335

Gene position: 853274-853591 (Clockwise)

Preceding gene: 103486333

Following gene: 103486337

Centisome position: 25.51

GC content: 64.47

Gene sequence:

>318_bases
ATGGCCAAGCTGATTGTCGTGACGCGCGACGGGACCGAGCATGAGATCGAGGGCGACACCAGCCTGACCGTGATGGAAAA
TATCCGCGATGCGGGTTTCGACGAACTGCTCGCGCTGTGCGGCGGCTGCTGTTCGTGCGCGACGTGCCATGTCCATGTCG
AGGCGGGCGACCGGGACGCCTTGCCCGCGATGAGCGAGGATGAGAACGACCTGCTCGATTCGACCACCGACCGAGACGAG
ACGTCGCGCCTGTCGTGCCAGATCCCGTTCAGCGATGCGCTCGACGGGCTGAAGGTGCGCATCGCGGCGGAAGATTGA

Upstream 100 bases:

>100_bases
CGCATATTCTCCTTTTGTTCCCAAGGTTGCTGATAGCAACGCTTGATTTGACTGGCAACGCGCGACATAGCGCATGCGAA
ACAAATCTATGGGGACGAGC

Downstream 100 bases:

>100_bases
CCTATACGTCGCCCCGCCTTCGGGGGGCGACGGTTATTTACTCGCCGTCGCCACCGCGTAGAGCGCGATCGCCGCGGCGT
TCGAGATGTTGAGGCTTTCC

Product: ferredoxin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 105; Mature: 104

Protein sequence:

>105_residues
MAKLIVVTRDGTEHEIEGDTSLTVMENIRDAGFDELLALCGGCCSCATCHVHVEAGDRDALPAMSEDENDLLDSTTDRDE
TSRLSCQIPFSDALDGLKVRIAAED

Sequences:

>Translated_105_residues
MAKLIVVTRDGTEHEIEGDTSLTVMENIRDAGFDELLALCGGCCSCATCHVHVEAGDRDALPAMSEDENDLLDSTTDRDE
TSRLSCQIPFSDALDGLKVRIAAED
>Mature_104_residues
AKLIVVTRDGTEHEIEGDTSLTVMENIRDAGFDELLALCGGCCSCATCHVHVEAGDRDALPAMSEDENDLLDSTTDRDET
SRLSCQIPFSDALDGLKVRIAAED

Specific function: Ferredoxin-type protein which transfers electrons from rhodocoxin reductase to cytochrome CYP116 (ThcB), which is involved in the degradation of thiocarbamate herbicides [H]

COG id: COG0633

COG function: function code C; Ferredoxin

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 2Fe-2S ferredoxin-type domain [H]

Homologues:

Organism=Caenorhabditis elegans, GI17544202, Length=103, Percent_Identity=34.9514563106796, Blast_Score=63, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6325004, Length=100, Percent_Identity=38, Blast_Score=71, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001055
- InterPro:   IPR018298
- InterPro:   IPR012675
- InterPro:   IPR001041 [H]

Pfam domain/function: PF00111 Fer2 [H]

EC number: NA

Molecular weight: Translated: 11317; Mature: 11185

Theoretical pI: Translated: 3.93; Mature: 3.93

Prosite motif: PS51085 2FE2S_FER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
8.6 %Cys+Met (Translated Protein)
5.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
7.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKLIVVTRDGTEHEIEGDTSLTVMENIRDAGFDELLALCGGCCSCATCHVHVEAGDRDA
CCEEEEEECCCCCCEECCCCEEHHHHHHCCCCHHHHHHHHCCCCCCEEEEEEEECCCCCC
LPAMSEDENDLLDSTTDRDETSRLSCQIPFSDALDGLKVRIAAED
CCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHCCCCEEEEEEECC
>Mature Secondary Structure 
AKLIVVTRDGTEHEIEGDTSLTVMENIRDAGFDELLALCGGCCSCATCHVHVEAGDRDA
CEEEEEECCCCCCEECCCCEEHHHHHHCCCCHHHHHHHHCCCCCCEEEEEEEECCCCCC
LPAMSEDENDLLDSTTDRDETSRLSCQIPFSDALDGLKVRIAAED
CCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: 2Fe-2S Cluster. [C]

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7836301 [H]