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The map label for this gene is exbD2 [H]

Identifier: 103486297

GI number: 103486297

Start: 811857

End: 812282

Strand: Reverse

Name: exbD2 [H]

Synonym: Sala_0805

Alternate gene names: 103486297

Gene position: 812282-811857 (Counterclockwise)

Preceding gene: 103486298

Following gene: 103486295

Centisome position: 24.28

GC content: 57.51

Gene sequence:

>426_bases
ATGTCCATGTCAGTTGGTGAACGGGACGACAATGAACCGATGATGGACATGAACACGACGCCGCTTATCGACGTCATGCT
CGTGCTTCTCATCATGTTCATCATCACCATCCCGGTCCAGACTCATGCGGTGAAGATCGACCTGCCGGTCCCGACCGACA
GCCAGAGCAATGTCGATCCTGAAAAGAACAAGGTGATGATCGACCGCGCCGGGACGATCACCTGGAACGGTACGCCGGTC
GACCTCGCGCAGCTTGCGCAATATCTGGAACAGACCAAGGCGCTGCCGGTCGAACCCGAACTGCAGGTTCAACCCGATCC
CTATGCGCGCTACATCGTCGTCGACAATGTCATGGCGGTGATCAAGCGCAGCGGCGTCGGCAAGCTCGGCTTCGTCGGTA
ACGAACAATATGCCCGCGTCTTCTGA

Upstream 100 bases:

>100_bases
CCGGCTTCCAGAAGATCGGGTTCATTTCGGAACCGGCTCCTGGCTCGGGCACGGTGGGCCGCCTCTAAGGCGGTCCGCCC
AGATATGAAGGAATAACCCA

Downstream 100 bases:

>100_bases
TTCCTGACATCGGCGCCGCACGGCAAAACAGGGGGCTGCGAAGCGATTCGCGGCCCCTTTGCCGTGGCGGCCGACCAGGG
CTGAAACCGACCGGAAGTGG

Product: biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 140

Protein sequence:

>141_residues
MSMSVGERDDNEPMMDMNTTPLIDVMLVLLIMFIITIPVQTHAVKIDLPVPTDSQSNVDPEKNKVMIDRAGTITWNGTPV
DLAQLAQYLEQTKALPVEPELQVQPDPYARYIVVDNVMAVIKRSGVGKLGFVGNEQYARVF

Sequences:

>Translated_141_residues
MSMSVGERDDNEPMMDMNTTPLIDVMLVLLIMFIITIPVQTHAVKIDLPVPTDSQSNVDPEKNKVMIDRAGTITWNGTPV
DLAQLAQYLEQTKALPVEPELQVQPDPYARYIVVDNVMAVIKRSGVGKLGFVGNEQYARVF
>Mature_140_residues
SMSVGERDDNEPMMDMNTTPLIDVMLVLLIMFIITIPVQTHAVKIDLPVPTDSQSNVDPEKNKVMIDRAGTITWNGTPVD
LAQLAQYLEQTKALPVEPELQVQPDPYARYIVVDNVMAVIKRSGVGKLGFVGNEQYARVF

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=137, Percent_Identity=34.3065693430657, Blast_Score=61, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15702; Mature: 15571

Theoretical pI: Translated: 4.30; Mature: 4.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
6.4 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.7 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMSVGERDDNEPMMDMNTTPLIDVMLVLLIMFIITIPVQTHAVKIDLPVPTDSQSNVDP
CCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCC
EKNKVMIDRAGTITWNGTPVDLAQLAQYLEQTKALPVEPELQVQPDPYARYIVVDNVMAV
CCCEEEEECCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCCEEEEEHHHHHHH
IKRSGVGKLGFVGNEQYARVF
HHHCCCCCEEECCCCCEEECC
>Mature Secondary Structure 
SMSVGERDDNEPMMDMNTTPLIDVMLVLLIMFIITIPVQTHAVKIDLPVPTDSQSNVDP
CCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCC
EKNKVMIDRAGTITWNGTPVDLAQLAQYLEQTKALPVEPELQVQPDPYARYIVVDNVMAV
CCCEEEEECCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCCEEEEEHHHHHHH
IKRSGVGKLGFVGNEQYARVF
HHHCCCCCEEECCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9371459 [H]