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The map label for this gene is yfhQ [C]

Identifier: 103486280

GI number: 103486280

Start: 795615

End: 796361

Strand: Reverse

Name: yfhQ [C]

Synonym: Sala_0788

Alternate gene names: 103486280

Gene position: 796361-795615 (Counterclockwise)

Preceding gene: 103486281

Following gene: 103486278

Centisome position: 23.81

GC content: 67.6

Gene sequence:

>747_bases
ATGACCGCGGCTGCCCCGCCCCCCGTCATCGTCCTCGTCCGACCGCAGCTTGGCGAGAATATCGGCAAGGCGGCGCGGGC
CATGCTCAATTTCGGGCTGACCGAACTGCGCCTCGTCAGCCCGCGCGACGGCTGGCCCAATCCAGATGCCGGGCCTGCGT
CAGCCGGGGCCGACGTCGTGCTTGCGGGCGCAAGGGTTTTTGAAACGCTGGCCGAGGCGGTCGCCGACTGCACGGACATT
TATGCCACCACGGTGCGCAAGCGCGGCGTCACCAAAGCGGTGCTCACGCCCGAAGCGGCCGCGCAGAAGGTCCACGCCCA
GCCGGGGCGTTCGGCCTATGTCTTCGGCCCCGAACGATCGGGGCTCGAAACCGACGATGTCGCACTGGCGCACGCGATCG
TCACGGTGCCGATCAATCCGGCCTTCGGTTCGCTGAATCTGGCGCAGGCGGTCATTCTGCTCGCCTATGAATGGTCGAAA
CATGTGCCCGGCGACGGCCATGTTGCGCTCGCCAGCCCGCCCGAAGTGCCGCTCGATCCGCCCGCCCCGCACGGCGAGCT
CGAAGAGCTGATCGGGCACTTCGTGCGCGACCTTGACCAGAGCGGCTATTTTTTCCCGCCCGAACGCCGCGACGCGACGC
TCCGCGCGCTGCGCACGACGCTCACCAAGACGGGCTGGTCGCACAACGACATCCGGATGATGCACGGAATCATTGTGGCT
CTTGGCCGGGCGCCAAGAACGCGCTGA

Upstream 100 bases:

>100_bases
TCGCCTATATCCGCTTCGCCAGCGTCTACCGCGATTTCACCGAAGCCAGGGATTTCGAAGAGTTCGCCTCGACGATCACC
GAGGCGGCGCGGCCGATCAA

Downstream 100 bases:

>100_bases
AGCGAAAACCGCTCAGTTATCGGCGCGCAGGCGATCCCACTGAACCGCCTCATAGGCGATTGATTGTTCGACCAGCTCGT
TCCACACCGCGCGCAGCCGC

Product: tRNA/rRNA methyltransferase (SpoU)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 247

Protein sequence:

>248_residues
MTAAAPPPVIVLVRPQLGENIGKAARAMLNFGLTELRLVSPRDGWPNPDAGPASAGADVVLAGARVFETLAEAVADCTDI
YATTVRKRGVTKAVLTPEAAAQKVHAQPGRSAYVFGPERSGLETDDVALAHAIVTVPINPAFGSLNLAQAVILLAYEWSK
HVPGDGHVALASPPEVPLDPPAPHGELEELIGHFVRDLDQSGYFFPPERRDATLRALRTTLTKTGWSHNDIRMMHGIIVA
LGRAPRTR

Sequences:

>Translated_248_residues
MTAAAPPPVIVLVRPQLGENIGKAARAMLNFGLTELRLVSPRDGWPNPDAGPASAGADVVLAGARVFETLAEAVADCTDI
YATTVRKRGVTKAVLTPEAAAQKVHAQPGRSAYVFGPERSGLETDDVALAHAIVTVPINPAFGSLNLAQAVILLAYEWSK
HVPGDGHVALASPPEVPLDPPAPHGELEELIGHFVRDLDQSGYFFPPERRDATLRALRTTLTKTGWSHNDIRMMHGIIVA
LGRAPRTR
>Mature_247_residues
TAAAPPPVIVLVRPQLGENIGKAARAMLNFGLTELRLVSPRDGWPNPDAGPASAGADVVLAGARVFETLAEAVADCTDIY
ATTVRKRGVTKAVLTPEAAAQKVHAQPGRSAYVFGPERSGLETDDVALAHAIVTVPINPAFGSLNLAQAVILLAYEWSKH
VPGDGHVALASPPEVPLDPPAPHGELEELIGHFVRDLDQSGYFFPPERRDATLRALRTTLTKTGWSHNDIRMMHGIIVAL
GRAPRTR

Specific function: Unknown

COG id: COG0565

COG function: function code J; rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Escherichia coli, GI1788881, Length=243, Percent_Identity=30.8641975308642, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1790865, Length=156, Percent_Identity=36.5384615384615, Blast_Score=81, Evalue=6e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004384
- InterPro:   IPR001537 [H]

Pfam domain/function: PF00588 SpoU_methylase [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 26429; Mature: 26297

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAAAPPPVIVLVRPQLGENIGKAARAMLNFGLTELRLVSPRDGWPNPDAGPASAGADVV
CCCCCCCCEEEEECCHHCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCEE
LAGARVFETLAEAVADCTDIYATTVRKRGVTKAVLTPEAAAQKVHAQPGRSAYVFGPERS
EHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHCCCCCEEEEECCCCC
GLETDDVALAHAIVTVPINPAFGSLNLAQAVILLAYEWSKHVPGDGHVALASPPEVPLDP
CCCCHHHHEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCC
PAPHGELEELIGHFVRDLDQSGYFFPPERRDATLRALRTTLTKTGWSHNDIRMMHGIIVA
CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
LGRAPRTR
HCCCCCCC
>Mature Secondary Structure 
TAAAPPPVIVLVRPQLGENIGKAARAMLNFGLTELRLVSPRDGWPNPDAGPASAGADVV
CCCCCCCEEEEECCHHCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCEE
LAGARVFETLAEAVADCTDIYATTVRKRGVTKAVLTPEAAAQKVHAQPGRSAYVFGPERS
EHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHCCCCCEEEEECCCCC
GLETDDVALAHAIVTVPINPAFGSLNLAQAVILLAYEWSKHVPGDGHVALASPPEVPLDP
CCCCHHHHEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCC
PAPHGELEELIGHFVRDLDQSGYFFPPERRDATLRALRTTLTKTGWSHNDIRMMHGIIVA
CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
LGRAPRTR
HCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]