| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is yegX [C]
Identifier: 103486256
GI number: 103486256
Start: 771715
End: 772470
Strand: Reverse
Name: yegX [C]
Synonym: Sala_0764
Alternate gene names: 103486256
Gene position: 772470-771715 (Counterclockwise)
Preceding gene: 103486257
Following gene: 103486255
Centisome position: 23.09
GC content: 70.37
Gene sequence:
>756_bases ATGAAGCTGCGGGCCATCGGGGGCGAGCAGAAAGCGGGGCGCAGCAACGGCTGGCGCGGCGCGGCTGCGCGCTTCCTCCG CCGTATCGGCGCCGCGGCGGTGCTCCTCCTCCTCGCGACGGGCCTCGCACTCTGGTGGGCGGCGCGCTGGACGCCCGATC GCGCCATCTATCCCGTGCAGGGCGTCACGATCGACGCCGACAACGGCGAGGTCCATTGGGGATCGATCAAGGCCGCGGGC GCCGATTTCGCCTATATCGCCGCGACCGATGGCACCGCAGGCGTCGACGCGCGGTTCGCGCGCAACCTGTCGCGCGCGCG CGATGCGGGGGTGCAGGCAGGCCCGATACACCGCTACAGCCTCTGCCACCTCGCGACCGACCAGGCCGCCAATTTCATCC GCCACGTCCCGCGCCGCGCCGACATGCTGCCGGCCGTGGTCTGGCTCGATTATGACGACCGCTGCCCCGACCGGCCGACG CGCGCGCTGCTCTTGTCCGAACTCGCGACCTTCCTCGCGCAGATCGAGACGCATATGGGCAAGCAGAGCCTGATCGCGCC GGGGCCGGCGTTCGAGGCCGATTACCGCGTGACACGCGGCATCGCGCGCACGACCTGGCTGCGGCGCGATTTCTTCGAGC CCGATTATGGCGCGCATCCCTGGACGATGTGGCAGGCGAATGATTATGTCCGCCTGTCGGGCGCCGACGGCACCGTCGGC TGGAACGTGCTGCGCGCAGGTGGAGAGATGCGATGA
Upstream 100 bases:
>100_bases AGATGTTGATGGACCGGCTCGACGGCAAGATCGCGGTCGATTTCGATACCGCGCGACGGTTGTTCACGCTGATCTGTGTG CTCCACATCAAGGGCTGACG
Downstream 100 bases:
>100_bases CCGACACGACGACCCGCAACGCGCTGATCGCCGCCGCGCGCGATGCCGCGAGCCGCGCCTACGCGCCCTATTCGGGCTTT CATGTCGGCGCCGCGCTGCT
Product: glycoside hydrolase family protein
Products: NA
Alternate protein names: Glycoside Hydrolase Family Protein; Lysozyme; Glycosyl Hydrolase Family; Glycosyl Hydrolase/Lysozyme; Glycosy Hydrolase Family Protein; Glycosyl Transferase; Cell-Wall Lytic; Glycosyl Hydrolases Family; Glycosyl Hydrolase Lysozyme Protein; Family; Extracellular Glycosyl Hydrolase; Glycoside Hydrolase Protein; Glycosyl Hydrolase; Cell-Wall Lytic Muramidase Protein
Number of amino acids: Translated: 251; Mature: 251
Protein sequence:
>251_residues MKLRAIGGEQKAGRSNGWRGAAARFLRRIGAAAVLLLLATGLALWWAARWTPDRAIYPVQGVTIDADNGEVHWGSIKAAG ADFAYIAATDGTAGVDARFARNLSRARDAGVQAGPIHRYSLCHLATDQAANFIRHVPRRADMLPAVVWLDYDDRCPDRPT RALLLSELATFLAQIETHMGKQSLIAPGPAFEADYRVTRGIARTTWLRRDFFEPDYGAHPWTMWQANDYVRLSGADGTVG WNVLRAGGEMR
Sequences:
>Translated_251_residues MKLRAIGGEQKAGRSNGWRGAAARFLRRIGAAAVLLLLATGLALWWAARWTPDRAIYPVQGVTIDADNGEVHWGSIKAAG ADFAYIAATDGTAGVDARFARNLSRARDAGVQAGPIHRYSLCHLATDQAANFIRHVPRRADMLPAVVWLDYDDRCPDRPT RALLLSELATFLAQIETHMGKQSLIAPGPAFEADYRVTRGIARTTWLRRDFFEPDYGAHPWTMWQANDYVRLSGADGTVG WNVLRAGGEMR >Mature_251_residues MKLRAIGGEQKAGRSNGWRGAAARFLRRIGAAAVLLLLATGLALWWAARWTPDRAIYPVQGVTIDADNGEVHWGSIKAAG ADFAYIAATDGTAGVDARFARNLSRARDAGVQAGPIHRYSLCHLATDQAANFIRHVPRRADMLPAVVWLDYDDRCPDRPT RALLLSELATFLAQIETHMGKQSLIAPGPAFEADYRVTRGIARTTWLRRDFFEPDYGAHPWTMWQANDYVRLSGADGTVG WNVLRAGGEMR
Specific function: Unknown
COG id: COG3757
COG function: function code M; Lyzozyme M1 (1,4-beta-N-acetylmuramidase)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI87082043, Length=202, Percent_Identity=25.7425742574257, Blast_Score=63, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27643; Mature: 27643
Theoretical pI: Translated: 9.88; Mature: 9.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLRAIGGEQKAGRSNGWRGAAARFLRRIGAAAVLLLLATGLALWWAARWTPDRAIYPVQ CEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEC GVTIDADNGEVHWGSIKAAGADFAYIAATDGTAGVDARFARNLSRARDAGVQAGPIHRYS CEEEECCCCEEEECEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHH LCHLATDQAANFIRHVPRRADMLPAVVWLDYDDRCPDRPTRALLLSELATFLAQIETHMG HHHHHHHHHHHHHHHCCHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC KQSLIAPGPAFEADYRVTRGIARTTWLRRDFFEPDYGAHPWTMWQANDYVRLSGADGTVG CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCEEEEECCCCCCC WNVLRAGGEMR HHHEECCCCCC >Mature Secondary Structure MKLRAIGGEQKAGRSNGWRGAAARFLRRIGAAAVLLLLATGLALWWAARWTPDRAIYPVQ CEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEC GVTIDADNGEVHWGSIKAAGADFAYIAATDGTAGVDARFARNLSRARDAGVQAGPIHRYS CEEEECCCCEEEECEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHH LCHLATDQAANFIRHVPRRADMLPAVVWLDYDDRCPDRPTRALLLSELATFLAQIETHMG HHHHHHHHHHHHHHHCCHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC KQSLIAPGPAFEADYRVTRGIARTTWLRRDFFEPDYGAHPWTMWQANDYVRLSGADGTVG CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCEEEEECCCCCCC WNVLRAGGEMR HHHEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA