| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486253
Identifier: 103486253
GI number: 103486253
Start: 769296
End: 770468
Strand: Reverse
Name: 103486253
Synonym: Sala_0761
Alternate gene names: NA
Gene position: 770468-769296 (Counterclockwise)
Preceding gene: 103486254
Following gene: 103486252
Centisome position: 23.03
GC content: 66.58
Gene sequence:
>1173_bases ATGGCCAGCGCACGCGATCTCGACATCATCGTTTATGGCGCCACCGGATTCACCGGCCGCCTCGTCGCCGAATATCTCGC GCACCACTACAAGGACCGCAAGGATGCGCCCAAATGGGCGATGGCGGGGCGCAGCCTTGTCAAACTCGCCGAGGTGCGCG ACCTGGTCGGCGCGCCCGCCGACACGCCGCTGATCGTCGCCGACGCCAGCGATCGCGCGAGCCTCGACGCGATGGCGGCG CGGACGCAGGTGGTGCTGACCACCGTCGGTCCCTATCAGCTATACGGCAGCGATCTCGTCGCCGCGTGCGTCCGCGCGGG CACCGCCTATGCCGACCTGTGCGGCGAGCCCGGCTGGATGCGCGAGATGATCGACGCGCACGAAGATGCGGCAAAGGCAT CGGGCGCGCGGATCACCTTCAGCTGCGGATTCGACTCGATCCCCTTCGACCTCGGCGTATTGTTCCTTCAGGAGGAGGCG GTGCGCCGCCACGGCAAGCCCGCGCCACGGGTCAAGGGCCGCGTGCGCAAGATGGCGGGCGGCGCGTCGGGCGGCACGAT CGCCAGCCTGACCGAGACGTTGAAAGCCGTCGCGAAAAAGCCGTCGCTCGCGCTGCTGCTCAAATCCTCCTTTGCACTCA CGCCCGGCTTCGAGGGTCCGGCGCAGCCAAGCGGGCTGATCCCCGAATATGACGGGGCGACGGGCACCTGGACCGCGCCC TTCGTCATGGCGCCGATCAACACCAAAAATGTCCACCGCACCAATTATCTGCTCGGCCACAAATGGGGCGCCGACCTCGT CTATGACGAGATGGTGATGACGACGATCGGCGACGCGGGCAAGGCGATGGCCGAAGCGATGGCCAAGGCCAATCCGTTCG GCGATTCCAAGCTCCGGCCCGGCGAAGGCCCGAGCAAGGAGGAGCGCGAAAACGGCTTTTACGACATCCTGTTCATCGGC GAATATCCCGACGGCACGACGCTGCGCGCCAGCGTGCAGGGCGACCGCGACCCCGGCTATGGCTCGACATCGAAGATGCT TGCCGAAACGGGCATGGCATTGCTTGAGAACAAGGGCGCGGGCGGCGTATGGACGCCGGGCGCGCTGCTTGGCCAGGCGC TGATCGACCGGCTGACTGCCAACGCCGGACTGACCTTTCAGATCGAGGAATGA
Upstream 100 bases:
>100_bases GCCTTTCGGTTGCCGATTCCGTCATGGCCCCCGCCCCCCTTGGCACCGCCCTCCATCTGCGCTAGCCTCCACTTGACGTT TACGTAAAGGGAGAGGCTCG
Downstream 100 bases:
>100_bases CAACAGAATGACGACCTCTCCCGGCGCGCTCGACGCGCTGCTCGCGACGCTGCGCACCGAAGAGGGCGTGGCCAAGGCGC ATATCGACGAAGGCTGGATG
Product: saccharopine dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 390; Mature: 389
Protein sequence:
>390_residues MASARDLDIIVYGATGFTGRLVAEYLAHHYKDRKDAPKWAMAGRSLVKLAEVRDLVGAPADTPLIVADASDRASLDAMAA RTQVVLTTVGPYQLYGSDLVAACVRAGTAYADLCGEPGWMREMIDAHEDAAKASGARITFSCGFDSIPFDLGVLFLQEEA VRRHGKPAPRVKGRVRKMAGGASGGTIASLTETLKAVAKKPSLALLLKSSFALTPGFEGPAQPSGLIPEYDGATGTWTAP FVMAPINTKNVHRTNYLLGHKWGADLVYDEMVMTTIGDAGKAMAEAMAKANPFGDSKLRPGEGPSKEERENGFYDILFIG EYPDGTTLRASVQGDRDPGYGSTSKMLAETGMALLENKGAGGVWTPGALLGQALIDRLTANAGLTFQIEE
Sequences:
>Translated_390_residues MASARDLDIIVYGATGFTGRLVAEYLAHHYKDRKDAPKWAMAGRSLVKLAEVRDLVGAPADTPLIVADASDRASLDAMAA RTQVVLTTVGPYQLYGSDLVAACVRAGTAYADLCGEPGWMREMIDAHEDAAKASGARITFSCGFDSIPFDLGVLFLQEEA VRRHGKPAPRVKGRVRKMAGGASGGTIASLTETLKAVAKKPSLALLLKSSFALTPGFEGPAQPSGLIPEYDGATGTWTAP FVMAPINTKNVHRTNYLLGHKWGADLVYDEMVMTTIGDAGKAMAEAMAKANPFGDSKLRPGEGPSKEERENGFYDILFIG EYPDGTTLRASVQGDRDPGYGSTSKMLAETGMALLENKGAGGVWTPGALLGQALIDRLTANAGLTFQIEE >Mature_389_residues ASARDLDIIVYGATGFTGRLVAEYLAHHYKDRKDAPKWAMAGRSLVKLAEVRDLVGAPADTPLIVADASDRASLDAMAAR TQVVLTTVGPYQLYGSDLVAACVRAGTAYADLCGEPGWMREMIDAHEDAAKASGARITFSCGFDSIPFDLGVLFLQEEAV RRHGKPAPRVKGRVRKMAGGASGGTIASLTETLKAVAKKPSLALLLKSSFALTPGFEGPAQPSGLIPEYDGATGTWTAPF VMAPINTKNVHRTNYLLGHKWGADLVYDEMVMTTIGDAGKAMAEAMAKANPFGDSKLRPGEGPSKEERENGFYDILFIGE YPDGTTLRASVQGDRDPGYGSTSKMLAETGMALLENKGAGGVWTPGALLGQALIDRLTANAGLTFQIEE
Specific function: Unknown
COG id: COG3268
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the saccharopine dehydrogenase family. Enoyl reductase subfamily [H]
Homologues:
Organism=Homo sapiens, GI55770836, Length=164, Percent_Identity=38.4146341463415, Blast_Score=114, Evalue=2e-25, Organism=Caenorhabditis elegans, GI17560066, Length=426, Percent_Identity=26.9953051643192, Blast_Score=127, Evalue=1e-29, Organism=Caenorhabditis elegans, GI32567112, Length=157, Percent_Identity=41.4012738853503, Blast_Score=125, Evalue=4e-29, Organism=Caenorhabditis elegans, GI71991033, Length=424, Percent_Identity=27.3584905660377, Blast_Score=96, Evalue=3e-20, Organism=Drosophila melanogaster, GI24646278, Length=433, Percent_Identity=28.6374133949192, Blast_Score=136, Evalue=3e-32, Organism=Drosophila melanogaster, GI24644140, Length=158, Percent_Identity=36.7088607594937, Blast_Score=120, Evalue=2e-27, Organism=Drosophila melanogaster, GI24644142, Length=158, Percent_Identity=36.7088607594937, Blast_Score=120, Evalue=2e-27, Organism=Drosophila melanogaster, GI21356081, Length=158, Percent_Identity=36.7088607594937, Blast_Score=120, Evalue=2e-27,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016040 - InterPro: IPR005097 [H]
Pfam domain/function: PF03435 Saccharop_dh [H]
EC number: NA
Molecular weight: Translated: 41333; Mature: 41202
Theoretical pI: Translated: 6.00; Mature: 6.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASARDLDIIVYGATGFTGRLVAEYLAHHYKDRKDAPKWAMAGRSLVKLAEVRDLVGAPA CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCC DTPLIVADASDRASLDAMAARTQVVLTTVGPYQLYGSDLVAACVRAGTAYADLCGEPGWM CCCEEEECCCCCHHHHHHHHCEEEEEEECCCHHHHHHHHHHHHHHCCCHHHHHCCCCHHH REMIDAHEDAAKASGARITFSCGFDSIPFDLGVLFLQEEAVRRHGKPAPRVKGRVRKMAG HHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCC GASGGTIASLTETLKAVAKKPSLALLLKSSFALTPGFEGPAQPSGLIPEYDGATGTWTAP CCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEECC FVMAPINTKNVHRTNYLLGHKWGADLVYDEMVMTTIGDAGKAMAEAMAKANPFGDSKLRP EEEECCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCC GEGPSKEERENGFYDILFIGEYPDGTTLRASVQGDRDPGYGSTSKMLAETGMALLENKGA CCCCCHHHHCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCC GGVWTPGALLGQALIDRLTANAGLTFQIEE CCCCCCHHHHHHHHHHHHHCCCCEEEEECC >Mature Secondary Structure ASARDLDIIVYGATGFTGRLVAEYLAHHYKDRKDAPKWAMAGRSLVKLAEVRDLVGAPA CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCC DTPLIVADASDRASLDAMAARTQVVLTTVGPYQLYGSDLVAACVRAGTAYADLCGEPGWM CCCEEEECCCCCHHHHHHHHCEEEEEEECCCHHHHHHHHHHHHHHCCCHHHHHCCCCHHH REMIDAHEDAAKASGARITFSCGFDSIPFDLGVLFLQEEAVRRHGKPAPRVKGRVRKMAG HHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCC GASGGTIASLTETLKAVAKKPSLALLLKSSFALTPGFEGPAQPSGLIPEYDGATGTWTAP CCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEECC FVMAPINTKNVHRTNYLLGHKWGADLVYDEMVMTTIGDAGKAMAEAMAKANPFGDSKLRP EEEECCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCC GEGPSKEERENGFYDILFIGEYPDGTTLRASVQGDRDPGYGSTSKMLAETGMALLENKGA CCCCCHHHHCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCC GGVWTPGALLGQALIDRLTANAGLTFQIEE CCCCCCHHHHHHHHHHHHHCCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9634230 [H]