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The map label for this gene is araQ [H]

Identifier: 103486241

GI number: 103486241

Start: 756212

End: 757048

Strand: Reverse

Name: araQ [H]

Synonym: Sala_0749

Alternate gene names: 103486241

Gene position: 757048-756212 (Counterclockwise)

Preceding gene: 103486242

Following gene: 103486240

Centisome position: 22.63

GC content: 59.98

Gene sequence:

>837_bases
ATGAGCGCGGCGAACGATCGCAATCGCCTCCCATGGCCCGCTTTGGTCGGCGTGTTGCTGGGCGCAGCCATCATGGTTGC
GCCGCTGGTTTGGACGCTGCTGCTGTCGCTCAAGAGCAACAGCGATCTCATGCGCGACAGTGCATCCGCCCTGTCCCTGC
CCTACACGCTCGACAATTACCGCGACATAATGACCGGGTCTGATGTGCCGCGCTGGTTGCTCAACAGCCTGATCGTTTCG
ACTGGCACAACTGTCGGCGTATTGATGCTTTGCTCGCTGGCCGGGTACGGCTTTGCGCGCCTCGACTTTCCCTTTCGCCG
GACGCTGTTCATATTTGTGTTGCTGGGGCTTGCCATCCCCGAACAGGCGGTGATCCTTCCGCGCCACCAGTTATTTGCGG
CGCTCGGTTGGCACAACAGCTATCCCGGCCTGATTTTTCCAGGGCTGGCCGCGCCCTTCGGGGTGTTTTTCATGACCCAG
TATTTCCGTGCGATTCCCAGGGATCTCGATGAGGCGGCAATGCTCGACGGGGCTTCGCGGATCGCGATTTTCTGGAAGGT
TCTGCTGCCTCTGTCGTTTCCGGCACAGGCGACGCTGGGCGTCTTCACCTTCCTCGGATCCTGGAACGATTACTGGTGGC
CGCTCATCTCCGCCACCACCAGCGACAAATACACGCTGACCGTCGGGTTGGCATCGGCGCAGATGAACTATGCGCAAACC
AGCGGGCTGGGCTTTCTGATGGCGCAAGCCGTTTTTGCATCCATCCCGATCCTGATCGTTTACATCATTTTTCAGAAACA
GATTGTCGGCGCGATGGCCGGGGCGGCGACCCGGTGA

Upstream 100 bases:

>100_bases
TTGGCTACGCCGTCGCCGCCGCCGAAGTCCTGTTCGTGCTGGTTCTCGCGCTGACACTGGGACAATATTGGTTCGGCACG
CGCGATGAAGGGGCGTCTCG

Downstream 100 bases:

>100_bases
GGCGCGCGAATATCGTTCTGGCCGCGCTTGCAGTGCTTCTGACCGGTAGTTGCGGCCAGACCGATGACCGGCCGACGTTG
GTCATCCAGCGTTTTTTCGG

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 277

Protein sequence:

>278_residues
MSAANDRNRLPWPALVGVLLGAAIMVAPLVWTLLLSLKSNSDLMRDSASALSLPYTLDNYRDIMTGSDVPRWLLNSLIVS
TGTTVGVLMLCSLAGYGFARLDFPFRRTLFIFVLLGLAIPEQAVILPRHQLFAALGWHNSYPGLIFPGLAAPFGVFFMTQ
YFRAIPRDLDEAAMLDGASRIAIFWKVLLPLSFPAQATLGVFTFLGSWNDYWWPLISATTSDKYTLTVGLASAQMNYAQT
SGLGFLMAQAVFASIPILIVYIIFQKQIVGAMAGAATR

Sequences:

>Translated_278_residues
MSAANDRNRLPWPALVGVLLGAAIMVAPLVWTLLLSLKSNSDLMRDSASALSLPYTLDNYRDIMTGSDVPRWLLNSLIVS
TGTTVGVLMLCSLAGYGFARLDFPFRRTLFIFVLLGLAIPEQAVILPRHQLFAALGWHNSYPGLIFPGLAAPFGVFFMTQ
YFRAIPRDLDEAAMLDGASRIAIFWKVLLPLSFPAQATLGVFTFLGSWNDYWWPLISATTSDKYTLTVGLASAQMNYAQT
SGLGFLMAQAVFASIPILIVYIIFQKQIVGAMAGAATR
>Mature_277_residues
SAANDRNRLPWPALVGVLLGAAIMVAPLVWTLLLSLKSNSDLMRDSASALSLPYTLDNYRDIMTGSDVPRWLLNSLIVST
GTTVGVLMLCSLAGYGFARLDFPFRRTLFIFVLLGLAIPEQAVILPRHQLFAALGWHNSYPGLIFPGLAAPFGVFFMTQY
FRAIPRDLDEAAMLDGASRIAIFWKVLLPLSFPAQATLGVFTFLGSWNDYWWPLISATTSDKYTLTVGLASAQMNYAQTS
GLGFLMAQAVFASIPILIVYIIFQKQIVGAMAGAATR

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789860, Length=278, Percent_Identity=26.6187050359712, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1787571, Length=287, Percent_Identity=26.1324041811847, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1790464, Length=276, Percent_Identity=29.7101449275362, Blast_Score=85, Evalue=6e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30396; Mature: 30265

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAANDRNRLPWPALVGVLLGAAIMVAPLVWTLLLSLKSNSDLMRDSASALSLPYTLDNY
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHCCCCCHHHH
RDIMTGSDVPRWLLNSLIVSTGTTVGVLMLCSLAGYGFARLDFPFRRTLFIFVLLGLAIP
HHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHCCC
EQAVILPRHQLFAALGWHNSYPGLIFPGLAAPFGVFFMTQYFRAIPRDLDEAAMLDGASR
CCCEECCHHHHHHHHCCCCCCCCCEECCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHH
IAIFWKVLLPLSFPAQATLGVFTFLGSWNDYWWPLISATTSDKYTLTVGLASAQMNYAQT
HHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHEEECCCCCEEEEEEEHHHHHHHHHH
SGLGFLMAQAVFASIPILIVYIIFQKQIVGAMAGAATR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SAANDRNRLPWPALVGVLLGAAIMVAPLVWTLLLSLKSNSDLMRDSASALSLPYTLDNY
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHCCCCCHHHH
RDIMTGSDVPRWLLNSLIVSTGTTVGVLMLCSLAGYGFARLDFPFRRTLFIFVLLGLAIP
HHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHCCC
EQAVILPRHQLFAALGWHNSYPGLIFPGLAAPFGVFFMTQYFRAIPRDLDEAAMLDGASR
CCCEECCHHHHHHHHCCCCCCCCCEECCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHH
IAIFWKVLLPLSFPAQATLGVFTFLGSWNDYWWPLISATTSDKYTLTVGLASAQMNYAQT
HHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHEEECCCCCEEEEEEEHHHHHHHHHH
SGLGFLMAQAVFASIPILIVYIIFQKQIVGAMAGAATR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]