| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is yesP [H]
Identifier: 103486242
GI number: 103486242
Start: 757045
End: 757917
Strand: Reverse
Name: yesP [H]
Synonym: Sala_0750
Alternate gene names: 103486242
Gene position: 757917-757045 (Counterclockwise)
Preceding gene: 103486243
Following gene: 103486241
Centisome position: 22.66
GC content: 61.74
Gene sequence:
>873_bases ATGACGGCGCGCGACCGGCTCGGGGGTTATGCCTTCGTCCTGCCGTTCGTGGCGGCGTACAGCTTCCTGCTGATCGTCCC CTTTATCATGGGCGCGTGGATCAGTTTCCACCGCGCCGATCTTTTCGGGGCGCGCCAATGGATCGGATTGGATAACTACG CCCGCCTCTTCGGCGACCCGGTCTTCTACCAGGCGATGGGAACGACATTCCTGCTGGCCCTGATGATCGTGCCGGCGCTG ACGATCATCACCTTGATGCTTGCGCTGGCGCTGAACCGGGCAACGCGTGCGGCGGCAATATTTCGGGGGTTGTTCTTCTC CTCGTCGGTGCTTTCGGTCACGATCGTCACCCTGATCTGGCGCTTTGTCCTGACCCCGGACGCCGGGTTGATCGCGAAGC TGCTAACCGCATTGGGGATGGAGCCGCTGCCATTTCTCAGTCACCCCGATCTGGTCGTCCCTGCGATCGCGCTCACCACG ATCTGGTGGGGCCTGGGGCTGCCAATGATGTTGTTTCTGGCAGGCTTGCAGCAGATTCCGCAGGACATGTACGAGGCGGC GGCGCTGGATCGCGCCAGTCGATGGACCGTGTTTCGCCGGATCACGCTTCCCTCGCTTCGCCGCACCACGATTTTGGTGG TCATGTTGCAGACCGCTGCCCAGCTACAGATATTCGGGCAGGCGCAGTTGCTTACATCGGGCGGACCAAGCGGCAGTTCG CGGCCGATCGTTCTCTACATCTATGAAATTGCGTTCGGCCGATGGGAACTTGGCTACGCCGTCGCCGCCGCCGAAGTCCT GTTCGTGCTGGTTCTCGCGCTGACACTGGGACAATATTGGTTCGGCACGCGCGATGAAGGGGCGTCTCGATGA
Upstream 100 bases:
>100_bases GCATGATACGGATGGGCGACCGCATCGGCCTGCTGATCGATGGCGCCAGTGCGCATCTGTTCGCACAGGATGGCACGGGT CATCATGCAGGCACGCCTGC
Downstream 100 bases:
>100_bases GCGCGGCGAACGATCGCAATCGCCTCCCATGGCCCGCTTTGGTCGGCGTGTTGCTGGGCGCAGCCATCATGGTTGCGCCG CTGGTTTGGACGCTGCTGCT
Product: binding-protein-dependent transport systems inner membrane component
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 290; Mature: 289
Protein sequence:
>290_residues MTARDRLGGYAFVLPFVAAYSFLLIVPFIMGAWISFHRADLFGARQWIGLDNYARLFGDPVFYQAMGTTFLLALMIVPAL TIITLMLALALNRATRAAAIFRGLFFSSSVLSVTIVTLIWRFVLTPDAGLIAKLLTALGMEPLPFLSHPDLVVPAIALTT IWWGLGLPMMLFLAGLQQIPQDMYEAAALDRASRWTVFRRITLPSLRRTTILVVMLQTAAQLQIFGQAQLLTSGGPSGSS RPIVLYIYEIAFGRWELGYAVAAAEVLFVLVLALTLGQYWFGTRDEGASR
Sequences:
>Translated_290_residues MTARDRLGGYAFVLPFVAAYSFLLIVPFIMGAWISFHRADLFGARQWIGLDNYARLFGDPVFYQAMGTTFLLALMIVPAL TIITLMLALALNRATRAAAIFRGLFFSSSVLSVTIVTLIWRFVLTPDAGLIAKLLTALGMEPLPFLSHPDLVVPAIALTT IWWGLGLPMMLFLAGLQQIPQDMYEAAALDRASRWTVFRRITLPSLRRTTILVVMLQTAAQLQIFGQAQLLTSGGPSGSS RPIVLYIYEIAFGRWELGYAVAAAEVLFVLVLALTLGQYWFGTRDEGASR >Mature_289_residues TARDRLGGYAFVLPFVAAYSFLLIVPFIMGAWISFHRADLFGARQWIGLDNYARLFGDPVFYQAMGTTFLLALMIVPALT IITLMLALALNRATRAAAIFRGLFFSSSVLSVTIVTLIWRFVLTPDAGLIAKLLTALGMEPLPFLSHPDLVVPAIALTTI WWGLGLPMMLFLAGLQQIPQDMYEAAALDRASRWTVFRRITLPSLRRTTILVVMLQTAAQLQIFGQAQLLTSGGPSGSSR PIVLYIYEIAFGRWELGYAVAAAEVLFVLVLALTLGQYWFGTRDEGASR
Specific function: Part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]
COG id: COG1175
COG function: function code G; ABC-type sugar transport systems, permease components
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1787570, Length=256, Percent_Identity=29.296875, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1789861, Length=252, Percent_Identity=25.7936507936508, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1790465, Length=249, Percent_Identity=30.5220883534137, Blast_Score=82, Evalue=6e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000515 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 32001; Mature: 31870
Theoretical pI: Translated: 9.97; Mature: 9.97
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTARDRLGGYAFVLPFVAAYSFLLIVPFIMGAWISFHRADLFGARQWIGLDNYARLFGDP CCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCH VFYQAMGTTFLLALMIVPALTIITLMLALALNRATRAAAIFRGLFFSSSVLSVTIVTLIW HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RFVLTPDAGLIAKLLTALGMEPLPFLSHPDLVVPAIALTTIWWGLGLPMMLFLAGLQQIP HHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QDMYEAAALDRASRWTVFRRITLPSLRRTTILVVMLQTAAQLQIFGQAQLLTSGGPSGSS HHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCC RPIVLYIYEIAFGRWELGYAVAAAEVLFVLVLALTLGQYWFGTRDEGASR CCEEEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure TARDRLGGYAFVLPFVAAYSFLLIVPFIMGAWISFHRADLFGARQWIGLDNYARLFGDP CCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCH VFYQAMGTTFLLALMIVPALTIITLMLALALNRATRAAAIFRGLFFSSSVLSVTIVTLIW HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RFVLTPDAGLIAKLLTALGMEPLPFLSHPDLVVPAIALTTIWWGLGLPMMLFLAGLQQIP HHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QDMYEAAALDRASRWTVFRRITLPSLRRTTILVVMLQTAAQLQIFGQAQLLTSGGPSGSS HHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCC RPIVLYIYEIAFGRWELGYAVAAAEVLFVLVLALTLGQYWFGTRDEGASR CCEEEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]