Click here to switch to the map view.

The map label for this gene is yieP [H]

Identifier: 103486238

GI number: 103486238

Start: 753326

End: 754051

Strand: Direct

Name: yieP [H]

Synonym: Sala_0746

Alternate gene names: 103486238

Gene position: 753326-754051 (Clockwise)

Preceding gene: 103486237

Following gene: 103486239

Centisome position: 22.52

GC content: 60.33

Gene sequence:

>726_bases
GTGACTGAGCAAACGGGATTGAACACGTCGTCGGCGATGGGTCGAAACCTGACCTACGGCATGCTGGATCTGCTGGGTAA
AGCGATCGTAACCGGCCAATATGACGACAGGGTCTTTCCGACCGAAGCCGAACTGGCGAAGCAATATGACGTGAGCCGTT
CGGTCGTTCGCGAAGCGGTGAAGATGCTGGGTGCAAAAGGACTGCTCACGGCGCGGCCGCGCAAGGGAACGACAATCCAG
TCGACCGACCGCTGGAACCTGTTCGATATCGATGTGCTGCGCTGGCTGCTGGACCGGAAGTTCTCGCTCAGCCTCTTGCG
GCAATTCTCGGAATTGCGCGAGGCCATTGAACCGGCTGCTGCGGCGCTCGCGTCGAGCGCGCATTCTCCGGAAGGTCTTG
CGGCAATCGAGGCCGGTTACGCGCGAATGGAAGCCGCGGAGCGGAACGAAGACGACCCTCTGGAGGCGGACATCGCGTTC
CATGTCGCGATTTTGCAAGCTTCGGCCAATCCCTTCTACGCGCAGTTTCGCGATGTCGTCACCACGGCGCTTCGAACGTC
GATCCGGTTCACCAACCGGTTCAAAGGGCGAACCGCAAGTCTGCCGCAGCACAAAGCCGTGCTTGACGCGATCGCCAATC
GCAGACCGTCCGAAGCCAAGGCGGCCATGGCAGCGCTGATTGCAGATGTCATGGTGCTGATCGCCGAAGCCGAAAGAAAC
GGATAG

Upstream 100 bases:

>100_bases
CCGCCGAACGAAATGCGGGGGACGATTTTGCCTGAAATTGGCCCTCCCTTTCAATGTTTTCGGTTGTATGCATGTCCGCG
AAGAGCTGGAGGGCAGTTGA

Downstream 100 bases:

>100_bases
ATGCGCTGCGCTGCCAATGTGGGCGCCATTCTGGGCGAGGGCCCTTGCTGGGTTGTGCGCGAGCAAAGCCTTTTTTGGAC
TGATATCAACCAACCCTGTC

Product: GntR-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 240

Protein sequence:

>241_residues
MTEQTGLNTSSAMGRNLTYGMLDLLGKAIVTGQYDDRVFPTEAELAKQYDVSRSVVREAVKMLGAKGLLTARPRKGTTIQ
STDRWNLFDIDVLRWLLDRKFSLSLLRQFSELREAIEPAAAALASSAHSPEGLAAIEAGYARMEAAERNEDDPLEADIAF
HVAILQASANPFYAQFRDVVTTALRTSIRFTNRFKGRTASLPQHKAVLDAIANRRPSEAKAAMAALIADVMVLIAEAERN
G

Sequences:

>Translated_241_residues
MTEQTGLNTSSAMGRNLTYGMLDLLGKAIVTGQYDDRVFPTEAELAKQYDVSRSVVREAVKMLGAKGLLTARPRKGTTIQ
STDRWNLFDIDVLRWLLDRKFSLSLLRQFSELREAIEPAAAALASSAHSPEGLAAIEAGYARMEAAERNEDDPLEADIAF
HVAILQASANPFYAQFRDVVTTALRTSIRFTNRFKGRTASLPQHKAVLDAIANRRPSEAKAAMAALIADVMVLIAEAERN
G
>Mature_240_residues
TEQTGLNTSSAMGRNLTYGMLDLLGKAIVTGQYDDRVFPTEAELAKQYDVSRSVVREAVKMLGAKGLLTARPRKGTTIQS
TDRWNLFDIDVLRWLLDRKFSLSLLRQFSELREAIEPAAAALASSAHSPEGLAAIEAGYARMEAAERNEDDPLEADIAFH
VAILQASANPFYAQFRDVVTTALRTSIRFTNRFKGRTASLPQHKAVLDAIANRRPSEAKAAMAALIADVMVLIAEAERNG

Specific function: Repressor For The Dgorkat Operon. Binds D-Galactonate As An Inducer. [C]

COG id: COG2186

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI48994961, Length=219, Percent_Identity=33.3333333333333, Blast_Score=119, Evalue=1e-28,
Organism=Escherichia coli, GI48994955, Length=221, Percent_Identity=33.4841628959276, Blast_Score=118, Evalue=4e-28,
Organism=Escherichia coli, GI1786303, Length=206, Percent_Identity=29.6116504854369, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26441; Mature: 26310

Theoretical pI: Translated: 7.77; Mature: 7.77

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEQTGLNTSSAMGRNLTYGMLDLLGKAIVTGQYDDRVFPTEAELAKQYDVSRSVVREAV
CCCCCCCCCHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
KMLGAKGLLTARPRKGTTIQSTDRWNLFDIDVLRWLLDRKFSLSLLRQFSELREAIEPAA
HHHCCCCCEECCCCCCCEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
AALASSAHSPEGLAAIEAGYARMEAAERNEDDPLEADIAFHVAILQASANPFYAQFRDVV
HHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH
TTALRTSIRFTNRFKGRTASLPQHKAVLDAIANRRPSEAKAAMAALIADVMVLIAEAERN
HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCC
G
C
>Mature Secondary Structure 
TEQTGLNTSSAMGRNLTYGMLDLLGKAIVTGQYDDRVFPTEAELAKQYDVSRSVVREAV
CCCCCCCCHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
KMLGAKGLLTARPRKGTTIQSTDRWNLFDIDVLRWLLDRKFSLSLLRQFSELREAIEPAA
HHHCCCCCEECCCCCCCEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
AALASSAHSPEGLAAIEAGYARMEAAERNEDDPLEADIAFHVAILQASANPFYAQFRDVV
HHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH
TTALRTSIRFTNRFKGRTASLPQHKAVLDAIANRRPSEAKAAMAALIADVMVLIAEAERN
HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCC
G
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7686882; 9278503 [H]