| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486232
Identifier: 103486232
GI number: 103486232
Start: 745041
End: 746558
Strand: Reverse
Name: 103486232
Synonym: Sala_0740
Alternate gene names: NA
Gene position: 746558-745041 (Counterclockwise)
Preceding gene: 103486233
Following gene: 103486230
Centisome position: 22.32
GC content: 59.62
Gene sequence:
>1518_bases ATGTCTGACCACGCCATTCGCAAAATCGTCATAGTCGGCGGCGGAACCGCGGGATGGATGGCGGCCTCGGCATTTTCAGC TTTGCTGGAGCGATCGATCGAAATCATCCTGGTCGAATCCGACGAGATCGGCACGGTCGGGGTCGGCGAGGCGACCATTC CGCCGCTGATTGCATTCAACTCCATGCTCGGTATCAACGAGGATGAATTTCTCTCCGCGACGCGCGATACGTTCAAGCTC GGTATTGAGTTCGTCGACTGGGGCGCGGTCGGAGAACGCTATTTCCATCCGTTCGGCCCCCATGGCCAGGATTTTCGCGG TGTTGCATTCCACCAACTTTACCTGCGCGAGACGGCGAGGCAGCCCCTGCCCGACATTCGGCACTGGTCGATGAGTGCGA CCGCGGCAGAGCTTGGTCGCTTTGCCCGCCCCGGACCCACTGCGCGCCCTCCCCTCTCGCAGCTGGCCTACGCCTTCCAT TTCGACGCCGGTCTCTATGCGCGATTTCTGCGCAGCTATGCGGAAAAGAACGGGGTGATCCGTATCGAGGGAAAGCTGGT TGACGCATCACTGAATCCCGAAAGCGGGCACGTCAGGTCGGTCAAACTGGCCAATGGAAACGATATCGCAGGCGATCTGT TCATCGATTGCTCCGGATTTCGCGGCCTCCTGATCGAGGAGCAACTCGGTACGGGCTATGAAGACTGGAGCCACTGGCTG CCCTGCGATCGCGCCGTCGCCGTACCATGCGGCCTGGCAAGCCCTCCCGAGCCGTTTACCCGCTCCACCGCGCGATCGGC CGGCTGGCAGTGGCGCATCCCCCTTCAGCACCGCATGGGCAATGGTCTCGTCTATTCGAGCGCACATCTGGAGCGCCGCG CAGCCGAGGATCTGCTCGTCGCCAACCTTGAAGGCAAAGGTCTTGCCGATCCAAAACATCTGTCCTTCACCGCCGGACGG CGCCGCAAGGCCTGGAACGCCAATGTCGTTTCCCTGGGATTGTCGAGCGGCTTTGTCGAACCGCTTGAATCAACCAGCAT CCATTTCATTCAGAGCGGAATCGCCAAGCTGCTTGCCCTGTTTCCCGACCGGCGCTTCGATCCCGTCGAAAGGAACGAAT ATAACCGTCAGATGGCCGATGTATTCGAAGACGCCCGCGACTTCATAATCCTGCATTACAAGGCGACCCGGCGTGACGAT TCCGATTTCTGGAACGATTGCCGGACGATGGATGTCCCCGATGGTCTGGCTGCAAAGTTCGGGCTTTGGCAATCGAAAGG GCGCCTGTTTCGCGAAGGGAGAGAATTGTTCGGAACCGCCAGTTGGGTTGCCGTGCTGTTGGGACAAGGCATACGTCCCG CCGAAACCGACCCGGCGGTGAATGCGATCGATCCCGACATTGCACGCGACATGCTTGACAAAATGCGATCAAGCTATCGA CAAATGGCCGAGCATATGCCGCCGCATTGGGATTTTATTTCGCGCGCTTGCCTTGCACCGGAGGCGATCTCAGGCTGA
Upstream 100 bases:
>100_bases GGGTCCGGTTTCGGTTCTGAGCGAAGCGGCCGGGCCGCGACTTCGCCAATGACCGACGAAATCGCCGATGCATTTCGGGC CGTGGCCGGGAACTGAGGGC
Downstream 100 bases:
>100_bases CGCCGAGCTGCGGCTTGCCATCCCCCCACAGCAGCGGCGCGATATACATATAACGTTTGTTATCAAACTTGCGGCAACCG CTGGTGGCCGCCCACGCGTG
Product: tryptophan halogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 505; Mature: 504
Protein sequence:
>505_residues MSDHAIRKIVIVGGGTAGWMAASAFSALLERSIEIILVESDEIGTVGVGEATIPPLIAFNSMLGINEDEFLSATRDTFKL GIEFVDWGAVGERYFHPFGPHGQDFRGVAFHQLYLRETARQPLPDIRHWSMSATAAELGRFARPGPTARPPLSQLAYAFH FDAGLYARFLRSYAEKNGVIRIEGKLVDASLNPESGHVRSVKLANGNDIAGDLFIDCSGFRGLLIEEQLGTGYEDWSHWL PCDRAVAVPCGLASPPEPFTRSTARSAGWQWRIPLQHRMGNGLVYSSAHLERRAAEDLLVANLEGKGLADPKHLSFTAGR RRKAWNANVVSLGLSSGFVEPLESTSIHFIQSGIAKLLALFPDRRFDPVERNEYNRQMADVFEDARDFIILHYKATRRDD SDFWNDCRTMDVPDGLAAKFGLWQSKGRLFREGRELFGTASWVAVLLGQGIRPAETDPAVNAIDPDIARDMLDKMRSSYR QMAEHMPPHWDFISRACLAPEAISG
Sequences:
>Translated_505_residues MSDHAIRKIVIVGGGTAGWMAASAFSALLERSIEIILVESDEIGTVGVGEATIPPLIAFNSMLGINEDEFLSATRDTFKL GIEFVDWGAVGERYFHPFGPHGQDFRGVAFHQLYLRETARQPLPDIRHWSMSATAAELGRFARPGPTARPPLSQLAYAFH FDAGLYARFLRSYAEKNGVIRIEGKLVDASLNPESGHVRSVKLANGNDIAGDLFIDCSGFRGLLIEEQLGTGYEDWSHWL PCDRAVAVPCGLASPPEPFTRSTARSAGWQWRIPLQHRMGNGLVYSSAHLERRAAEDLLVANLEGKGLADPKHLSFTAGR RRKAWNANVVSLGLSSGFVEPLESTSIHFIQSGIAKLLALFPDRRFDPVERNEYNRQMADVFEDARDFIILHYKATRRDD SDFWNDCRTMDVPDGLAAKFGLWQSKGRLFREGRELFGTASWVAVLLGQGIRPAETDPAVNAIDPDIARDMLDKMRSSYR QMAEHMPPHWDFISRACLAPEAISG >Mature_504_residues SDHAIRKIVIVGGGTAGWMAASAFSALLERSIEIILVESDEIGTVGVGEATIPPLIAFNSMLGINEDEFLSATRDTFKLG IEFVDWGAVGERYFHPFGPHGQDFRGVAFHQLYLRETARQPLPDIRHWSMSATAAELGRFARPGPTARPPLSQLAYAFHF DAGLYARFLRSYAEKNGVIRIEGKLVDASLNPESGHVRSVKLANGNDIAGDLFIDCSGFRGLLIEEQLGTGYEDWSHWLP CDRAVAVPCGLASPPEPFTRSTARSAGWQWRIPLQHRMGNGLVYSSAHLERRAAEDLLVANLEGKGLADPKHLSFTAGRR RKAWNANVVSLGLSSGFVEPLESTSIHFIQSGIAKLLALFPDRRFDPVERNEYNRQMADVFEDARDFIILHYKATRRDDS DFWNDCRTMDVPDGLAAKFGLWQSKGRLFREGRELFGTASWVAVLLGQGIRPAETDPAVNAIDPDIARDMLDKMRSSYRQ MAEHMPPHWDFISRACLAPEAISG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006905 [H]
Pfam domain/function: PF04820 Trp_halogenase [H]
EC number: NA
Molecular weight: Translated: 56054; Mature: 55923
Theoretical pI: Translated: 6.35; Mature: 6.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDHAIRKIVIVGGGTAGWMAASAFSALLERSIEIILVESDEIGTVGVGEATIPPLIAFN CCCCCEEEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCCEEECCCCCCCHHHHHH SMLGINEDEFLSATRDTFKLGIEFVDWGAVGERYFHPFGPHGQDFRGVAFHQLYLRETAR HHCCCCHHHHHHHHHHHHHHCCEEEECCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHC QPLPDIRHWSMSATAAELGRFARPGPTARPPLSQLAYAFHFDAGLYARFLRSYAEKNGVI CCCCCHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCEE RIEGKLVDASLNPESGHVRSVKLANGNDIAGDLFIDCSGFRGLLIEEQLGTGYEDWSHWL EEEEEEEECCCCCCCCCEEEEEECCCCCCCCEEEEEECCCCCEEEEHHHCCCHHHHHHCC PCDRAVAVPCGLASPPEPFTRSTARSAGWQWRIPLQHRMGNGLVYSSAHLERRAAEDLLV CCCCCEECCCCCCCCCCCHHHHHHHHCCCEEECCHHHHCCCCEEEEHHHHHHHHHHHHEE ANLEGKGLADPKHLSFTAGRRRKAWNANVVSLGLSSGFVEPLESTSIHFIQSGIAKLLAL EECCCCCCCCCCCEEECCCCCCCCCCCCEEEEECCCCCCCCHHCCHHHHHHHHHHHHHHH FPDRRFDPVERNEYNRQMADVFEDARDFIILHYKATRRDDSDFWNDCRTMDVPDGLAAKF CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHCCCCCCCCCCHHHHH GLWQSKGRLFREGRELFGTASWVAVLLGQGIRPAETDPAVNAIDPDIARDMLDKMRSSYR CCHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH QMAEHMPPHWDFISRACLAPEAISG HHHHHCCCCHHHHHHHHCCCHHCCC >Mature Secondary Structure SDHAIRKIVIVGGGTAGWMAASAFSALLERSIEIILVESDEIGTVGVGEATIPPLIAFN CCCCEEEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCCEEECCCCCCCHHHHHH SMLGINEDEFLSATRDTFKLGIEFVDWGAVGERYFHPFGPHGQDFRGVAFHQLYLRETAR HHCCCCHHHHHHHHHHHHHHCCEEEECCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHC QPLPDIRHWSMSATAAELGRFARPGPTARPPLSQLAYAFHFDAGLYARFLRSYAEKNGVI CCCCCHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCEE RIEGKLVDASLNPESGHVRSVKLANGNDIAGDLFIDCSGFRGLLIEEQLGTGYEDWSHWL EEEEEEEECCCCCCCCCEEEEEECCCCCCCCEEEEEECCCCCEEEEHHHCCCHHHHHHCC PCDRAVAVPCGLASPPEPFTRSTARSAGWQWRIPLQHRMGNGLVYSSAHLERRAAEDLLV CCCCCEECCCCCCCCCCCHHHHHHHHCCCEEECCHHHHCCCCEEEEHHHHHHHHHHHHEE ANLEGKGLADPKHLSFTAGRRRKAWNANVVSLGLSSGFVEPLESTSIHFIQSGIAKLLAL EECCCCCCCCCCCEEECCCCCCCCCCCCEEEEECCCCCCCCHHCCHHHHHHHHHHHHHHH FPDRRFDPVERNEYNRQMADVFEDARDFIILHYKATRRDDSDFWNDCRTMDVPDGLAAKF CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHCCCCCCCCCCHHHHH GLWQSKGRLFREGRELFGTASWVAVLLGQGIRPAETDPAVNAIDPDIARDMLDKMRSSYR CCHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH QMAEHMPPHWDFISRACLAPEAISG HHHHHCCCCHHHHHHHHCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9163424 [H]