| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is surE [H]
Identifier: 103486214
GI number: 103486214
Start: 727399
End: 728220
Strand: Reverse
Name: surE [H]
Synonym: Sala_0721
Alternate gene names: 103486214
Gene position: 728220-727399 (Counterclockwise)
Preceding gene: 103486215
Following gene: 103486213
Centisome position: 21.77
GC content: 65.82
Gene sequence:
>822_bases ATGCCGATGGGCATCTCGACTTCGCTCAATGCGAACGGAACCGAGAAAGAGAAAATGATGCGCATCCTCCTCACCAACGA CGACGGTTATCACGCCCCCGGCATGGCGGTGCTCGAAGCGATCGCGCGTCAGCTGTCGGACGACATCTGGGTCTGCGCCC CCGCCGAAGAGCAATCGGGCGCCGGCCATTCGCTCACCCTCTCGCGCCCTGTGCGCATCCGCGAACATGGGCCGCGGCGC TGGTCGTGCAGCGGCACGCCGACCGATTCGGTGATGATGGCGATCGGCAAGCTGATGCCCGAAAAGCCCGACCTCATCCT CTCGGGCGTCAACCGCGGCGCCAATCTGGGCGACGATATCACCTATTCGGGCACCGTCTCGGCGGCAATCGAAGGCGCGC TCGCAGGCATCCGCTCGATTGCGCTGAGTCAGGTTTATGCGCGCGAAGGCATGGGCGACAGCGTCCCGTTCGAGGCCGCC GAACAATGGGGCGCCCGGGTGCTCGCGCCGCTGATGACGATGGACATGGCGCCGCGCACGCTGATCAACATCAACTTCCC CGCGATCCCCGCCGCCGAGGTGCAGGGAATCCGCGTCACGCGCCAGGGCTTTCACGATTATGGTCGCGGCTCGATCGTCG AGGGCACGGACCCGCGCGGCTATCCCTATTACTGGTTCGGCCTCCACGGCATCGAGCACAGCCTCGGTCACGACAGCGAT CTGGAAGCGATCGACGATCGCTTCATCTCGGTCACCCCGCTCCAGCTCGACCTGACGCACGACCCCTCGCTCGCCGCACT CCGCGCGGCCTATGCTGGCTAG
Upstream 100 bases:
>100_bases GCGGGATCACCCGGCTGACGCCCCTGGGTTGACAAGGTTAAACTGACTCCACTTTCCCGTTCGTGTCGAGCGAAGTCGAG ACACCCAACGGCCTTGCGCC
Downstream 100 bases:
>100_bases CATCGTCGCCCCCGCGAAGGCGGGGCCGCTGTCGGTTCACGCAGCGTCGAAGCAAAATGTCGCTAGCGGCCCCCGCCTTC GCGGGGGCGACGTGCATTGG
Product: stationary phase survival protein SurE
Products: NA
Alternate protein names: Nucleoside 5'-monophosphate phosphohydrolase [H]
Number of amino acids: Translated: 273; Mature: 272
Protein sequence:
>273_residues MPMGISTSLNANGTEKEKMMRILLTNDDGYHAPGMAVLEAIARQLSDDIWVCAPAEEQSGAGHSLTLSRPVRIREHGPRR WSCSGTPTDSVMMAIGKLMPEKPDLILSGVNRGANLGDDITYSGTVSAAIEGALAGIRSIALSQVYAREGMGDSVPFEAA EQWGARVLAPLMTMDMAPRTLININFPAIPAAEVQGIRVTRQGFHDYGRGSIVEGTDPRGYPYYWFGLHGIEHSLGHDSD LEAIDDRFISVTPLQLDLTHDPSLAALRAAYAG
Sequences:
>Translated_273_residues MPMGISTSLNANGTEKEKMMRILLTNDDGYHAPGMAVLEAIARQLSDDIWVCAPAEEQSGAGHSLTLSRPVRIREHGPRR WSCSGTPTDSVMMAIGKLMPEKPDLILSGVNRGANLGDDITYSGTVSAAIEGALAGIRSIALSQVYAREGMGDSVPFEAA EQWGARVLAPLMTMDMAPRTLININFPAIPAAEVQGIRVTRQGFHDYGRGSIVEGTDPRGYPYYWFGLHGIEHSLGHDSD LEAIDDRFISVTPLQLDLTHDPSLAALRAAYAG >Mature_272_residues PMGISTSLNANGTEKEKMMRILLTNDDGYHAPGMAVLEAIARQLSDDIWVCAPAEEQSGAGHSLTLSRPVRIREHGPRRW SCSGTPTDSVMMAIGKLMPEKPDLILSGVNRGANLGDDITYSGTVSAAIEGALAGIRSIALSQVYAREGMGDSVPFEAAE QWGARVLAPLMTMDMAPRTLININFPAIPAAEVQGIRVTRQGFHDYGRGSIVEGTDPRGYPYYWFGLHGIEHSLGHDSDL EAIDDRFISVTPLQLDLTHDPSLAALRAAYAG
Specific function: Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates [H]
COG id: COG0496
COG function: function code R; Predicted acid phosphatase
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the surE nucleotidase family [H]
Homologues:
Organism=Escherichia coli, GI1789101, Length=242, Percent_Identity=38.8429752066116, Blast_Score=158, Evalue=4e-40,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002828 [H]
Pfam domain/function: PF01975 SurE [H]
EC number: =3.1.3.5 [H]
Molecular weight: Translated: 29403; Mature: 29272
Theoretical pI: Translated: 4.97; Mature: 4.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPMGISTSLNANGTEKEKMMRILLTNDDGYHAPGMAVLEAIARQLSDDIWVCAPAEEQSG CCCCCCCCCCCCCCCHHHEEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCC AGHSLTLSRPVRIREHGPRRWSCSGTPTDSVMMAIGKLMPEKPDLILSGVNRGANLGDDI CCCEEEECCCEECCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCC TYSGTVSAAIEGALAGIRSIALSQVYAREGMGDSVPFEAAEQWGARVLAPLMTMDMAPRT EECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCE LININFPAIPAAEVQGIRVTRQGFHDYGRGSIVEGTDPRGYPYYWFGLHGIEHSLGHDSD EEEECCCCCCHHHHCCEEEEHHHHHHCCCCCEECCCCCCCCCEEEEEECCHHHHCCCCCC LEAIDDRFISVTPLQLDLTHDPSLAALRAAYAG HHHHCCCEEEEEEEEEEECCCCCHHHHHHHHCC >Mature Secondary Structure PMGISTSLNANGTEKEKMMRILLTNDDGYHAPGMAVLEAIARQLSDDIWVCAPAEEQSG CCCCCCCCCCCCCCHHHEEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCC AGHSLTLSRPVRIREHGPRRWSCSGTPTDSVMMAIGKLMPEKPDLILSGVNRGANLGDDI CCCEEEECCCEECCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCC TYSGTVSAAIEGALAGIRSIALSQVYAREGMGDSVPFEAAEQWGARVLAPLMTMDMAPRT EECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCE LININFPAIPAAEVQGIRVTRQGFHDYGRGSIVEGTDPRGYPYYWFGLHGIEHSLGHDSD EEEECCCCCCHHHHCCEEEEHHHHHHCCCCCEECCCCCCCCCEEEEEECCHHHHCCCCCC LEAIDDRFISVTPLQLDLTHDPSLAALRAAYAG HHHHCCCEEEEEEEEEEECCCCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA