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The map label for this gene is ycjD [C]

Identifier: 103486166

GI number: 103486166

Start: 681974

End: 682495

Strand: Reverse

Name: ycjD [C]

Synonym: Sala_0673

Alternate gene names: 103486166

Gene position: 682495-681974 (Counterclockwise)

Preceding gene: 103486167

Following gene: 103486165

Centisome position: 20.4

GC content: 62.07

Gene sequence:

>522_bases
GTGACAAGCCTTTCGCCCACGGATCAAGCCAAGCGCCTATCCACCCCTCCCCTTCAGGGGAGGGGCCGGGGGTGGGGGCT
ATCGGCCTTGGACATCGCCGAACTGCAAAGCCGCGCGCGCCAGATGCGCAACAACCCCACCGAGCCGGAAAAACGGCTGT
GGCGGCAGTTGTCGAACGGGCAGTTGTATGGCCACAAGTTTCGCCGCCAGCAAGTGATCGGTTGGTTCATTGCGGATTTC
GTCTGTGCGTCGGCGAACCTGATCGTCGAAGTCGATGGTGACACGCATGAGGAAACGGCCGATCGCGCCCGCGACAAGGC
GCTAGCGGAGCAGGGCTATCGCACCGTCCGCGTTTCGAACCATGAAGTGATGACGAACATGGATGGCGTGTTGGCCTTCA
TTTCTGAAGCGTTGCGTCAGGCCGATGGCCCCCACCCCAACCCCTCCCCTGAAGGGGAGGGGCTTAAGAGGGTCGAGGCG
CAGAAATTGCTGGGGATTTCGCTTGAGGGGAGCGTGGGATGA

Upstream 100 bases:

>100_bases
TCGTCAACGGCTTTGCCAAGGAAGTGTTGCAGCAGCTGCCGATGGAGTTTGCGGTCGAGGCGCAGAAATTGCTGGGGATC
AGCCTCGAAGGGAGCGTGGG

Downstream 100 bases:

>100_bases
GCATTGCAGTTCGCCCCGCCACCTCGGATGACGCACCCGAACTTGCCGCGCTGATCAACGCCATCATTGCGCGCGGGGGA
ACCACCGCGCTGGAAACCCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 173; Mature: 172

Protein sequence:

>173_residues
MTSLSPTDQAKRLSTPPLQGRGRGWGLSALDIAELQSRARQMRNNPTEPEKRLWRQLSNGQLYGHKFRRQQVIGWFIADF
VCASANLIVEVDGDTHEETADRARDKALAEQGYRTVRVSNHEVMTNMDGVLAFISEALRQADGPHPNPSPEGEGLKRVEA
QKLLGISLEGSVG

Sequences:

>Translated_173_residues
MTSLSPTDQAKRLSTPPLQGRGRGWGLSALDIAELQSRARQMRNNPTEPEKRLWRQLSNGQLYGHKFRRQQVIGWFIADF
VCASANLIVEVDGDTHEETADRARDKALAEQGYRTVRVSNHEVMTNMDGVLAFISEALRQADGPHPNPSPEGEGLKRVEA
QKLLGISLEGSVG
>Mature_172_residues
TSLSPTDQAKRLSTPPLQGRGRGWGLSALDIAELQSRARQMRNNPTEPEKRLWRQLSNGQLYGHKFRRQQVIGWFIADFV
CASANLIVEVDGDTHEETADRARDKALAEQGYRTVRVSNHEVMTNMDGVLAFISEALRQADGPHPNPSPEGEGLKRVEAQ
KLLGISLEGSVG

Specific function: Unknown

COG id: COG2852

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ycjD and H.influenzae HI_0925 [H]

Homologues:

Organism=Escherichia coli, GI1787546, Length=121, Percent_Identity=37.1900826446281, Blast_Score=79, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007569
- InterPro:   IPR011335 [H]

Pfam domain/function: PF04480 DUF559 [H]

EC number: NA

Molecular weight: Translated: 19160; Mature: 19029

Theoretical pI: Translated: 7.68; Mature: 7.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSLSPTDQAKRLSTPPLQGRGRGWGLSALDIAELQSRARQMRNNPTEPEKRLWRQLSNG
CCCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCC
QLYGHKFRRQQVIGWFIADFVCASANLIVEVDGDTHEETADRARDKALAEQGYRTVRVSN
CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECC
HEVMTNMDGVLAFISEALRQADGPHPNPSPEGEGLKRVEAQKLLGISLEGSVG
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
TSLSPTDQAKRLSTPPLQGRGRGWGLSALDIAELQSRARQMRNNPTEPEKRLWRQLSNG
CCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCC
QLYGHKFRRQQVIGWFIADFVCASANLIVEVDGDTHEETADRARDKALAEQGYRTVRVSN
CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECC
HEVMTNMDGVLAFISEALRQADGPHPNPSPEGEGLKRVEAQKLLGISLEGSVG
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]