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The map label for this gene is sufD [H]

Identifier: 103486163

GI number: 103486163

Start: 679798

End: 680526

Strand: Reverse

Name: sufD [H]

Synonym: Sala_0670

Alternate gene names: 103486163

Gene position: 680526-679798 (Counterclockwise)

Preceding gene: 103486164

Following gene: 103486162

Centisome position: 20.34

GC content: 67.22

Gene sequence:

>729_bases
GTGGTGACCACCCTCCCCTCGCGCCGCGACGAAGCCTGGCGCTACGCCGATATTGATGCGGTCGCCGCGGCATGGCCGCT
GCCTGCGCCCGAGAGCATCATCGTGCCCGCGGGCGGCCAGTTCGCGCGCGCGATCGTGCAGGATAGCGGCGCGATCCATC
AGATCGAAATGAGCATCGGCAAGGACGCGACCGCCGCGCTGCATATCCTCAACATCGGCGGCGCATACGGCCGCATCGAA
CTCGCCGTGACGCTCCACGAAGGCGCCGACTTCACCCTCGGCGCGGCGCAGATCGGCGGCGGTGCACAGAATCTGGAAAT
CGTCACCACGGTCATCCATGCCGAACCCGGCGCGACGTCGCGGCAGGTCGTGCGATCGGTACTCGGCGGCACCGCGACGG
GCACCTATCTGGGCAAGGTCGCGGTCGCGCGCGATGCGCAGCAGACCGACAGCGAGCAGGATGTGAAGGCTATGCTGCTG
AACCGCAGCGCCACCGCCAACGCCAAGCCCGAACTCGAAATCTTCGCCGACGATGTGAAGTGCGCGCATGGCTGCGCGAT
CGGGGAACTGGATGCCATGGCGCTCTATTATCTCGAGTCGCGCGGGATGCCGCCCGCCGAGGCGAAGAAGATATTGCTCC
AGGCCTTTGTCGCGGGCGTGTTCGACGGGGCGGTGGATGAGGCGCGGTTGCAGGAGCTGGCGCTGGCGAAGCTGGGGGAA
CTGGTGTGA

Upstream 100 bases:

>100_bases
CTCGCGCGATCGCATGGCGACCGCATACCCCTCACCCAGCTTCGACTAGCAAGCAAGCTCGCAAATCTGCGCAACCCTCT
CCCACAAGGGGAGAGGGTAA

Downstream 100 bases:

>100_bases
GCAATCTCCCTTCCCCGTTCGCATCGAGCGAAGTCGGGATGCCCATCGGTAACGCACGCCTTCAGGGTGTCTCGACTTCG
CTCGACACGAACGGGATCAG

Product: SufBD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MVTTLPSRRDEAWRYADIDAVAAAWPLPAPESIIVPAGGQFARAIVQDSGAIHQIEMSIGKDATAALHILNIGGAYGRIE
LAVTLHEGADFTLGAAQIGGGAQNLEIVTTVIHAEPGATSRQVVRSVLGGTATGTYLGKVAVARDAQQTDSEQDVKAMLL
NRSATANAKPELEIFADDVKCAHGCAIGELDAMALYYLESRGMPPAEAKKILLQAFVAGVFDGAVDEARLQELALAKLGE
LV

Sequences:

>Translated_242_residues
MVTTLPSRRDEAWRYADIDAVAAAWPLPAPESIIVPAGGQFARAIVQDSGAIHQIEMSIGKDATAALHILNIGGAYGRIE
LAVTLHEGADFTLGAAQIGGGAQNLEIVTTVIHAEPGATSRQVVRSVLGGTATGTYLGKVAVARDAQQTDSEQDVKAMLL
NRSATANAKPELEIFADDVKCAHGCAIGELDAMALYYLESRGMPPAEAKKILLQAFVAGVFDGAVDEARLQELALAKLGE
LV
>Mature_242_residues
MVTTLPSRRDEAWRYADIDAVAAAWPLPAPESIIVPAGGQFARAIVQDSGAIHQIEMSIGKDATAALHILNIGGAYGRIE
LAVTLHEGADFTLGAAQIGGGAQNLEIVTTVIHAEPGATSRQVVRSVLGGTATGTYLGKVAVARDAQQTDSEQDVKAMLL
NRSATANAKPELEIFADDVKCAHGCAIGELDAMALYYLESRGMPPAEAKKILLQAFVAGVFDGAVDEARLQELALAKLGE
LV

Specific function: The sufBCD complex acts synergistically with sufE to stimulate the cysteine desulfurase activity of sufS. The sufBCD complex contributes to the assembly or repair of oxygen-labile iron-sulfur clusters under oxidative stress. May facilitate iron uptake fro

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0051 (ycf24) family [H]

Homologues:

Organism=Escherichia coli, GI1787971, Length=187, Percent_Identity=30.4812834224599, Blast_Score=99, Evalue=3e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000825
- InterPro:   IPR011542 [H]

Pfam domain/function: PF01458 UPF0051 [H]

EC number: NA

Molecular weight: Translated: 25315; Mature: 25315

Theoretical pI: Translated: 4.62; Mature: 4.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVTTLPSRRDEAWRYADIDAVAAAWPLPAPESIIVPAGGQFARAIVQDSGAIHQIEMSIG
CCCCCCCCCCCCCEEECHHHHHHHCCCCCCCEEEEECCCHHHHHHHHCCCCEEEEEECCC
KDATAALHILNIGGAYGRIELAVTLHEGADFTLGAAQIGGGAQNLEIVTTVIHAEPGATS
CCCHHEEEEEECCCCCCEEEEEEEEECCCCEEEEHHHHCCCCCCCEEEEEEEECCCCCCH
RQVVRSVLGGTATGTYLGKVAVARDAQQTDSEQDVKAMLLNRSATANAKPELEIFADDVK
HHHHHHHHCCCCCCHHHHHHHHHCCHHHCCCHHHHHHHHHCCCCCCCCCCCEEEEECCHH
CAHGCAIGELDAMALYYLESRGMPPAEAKKILLQAFVAGVFDGAVDEARLQELALAKLGE
HHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
LV
CC
>Mature Secondary Structure
MVTTLPSRRDEAWRYADIDAVAAAWPLPAPESIIVPAGGQFARAIVQDSGAIHQIEMSIG
CCCCCCCCCCCCCEEECHHHHHHHCCCCCCCEEEEECCCHHHHHHHHCCCCEEEEEECCC
KDATAALHILNIGGAYGRIELAVTLHEGADFTLGAAQIGGGAQNLEIVTTVIHAEPGATS
CCCHHEEEEEECCCCCCEEEEEEEEECCCCEEEEHHHHCCCCCCCEEEEEEEECCCCCCH
RQVVRSVLGGTATGTYLGKVAVARDAQQTDSEQDVKAMLLNRSATANAKPELEIFADDVK
HHHHHHHHCCCCCCHHHHHHHHHCCHHHCCCHHHHHHHHHCCCCCCCCCCCEEEEECCHH
CAHGCAIGELDAMALYYLESRGMPPAEAKKILLQAFVAGVFDGAVDEARLQELALAKLGE
HHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
LV
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 10322040 [H]