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The map label for this gene is sufC [H]

Identifier: 103486164

GI number: 103486164

Start: 680732

End: 681475

Strand: Reverse

Name: sufC [H]

Synonym: Sala_0671

Alternate gene names: 103486164

Gene position: 681475-680732 (Counterclockwise)

Preceding gene: 103486165

Following gene: 103486163

Centisome position: 20.37

GC content: 63.44

Gene sequence:

>744_bases
ATGCTGAAAATTGAAAACCTTCACGCCACCGTCGCCGACAAGCCGATCCTCAAGGGTCTGTCGCTCGCCATCAATGCGGG
CGAGATCCATGCGATCATGGGGCCGAATGGCGCGGGCAAGTCGACTTTGTCCTATGTGCTCGGCGGGCGGCCGGGCTATG
AGGTCACCGAGGGGTCGGTGACCTTCGAGGGACAGGATCTGCTCGATATGGAGCCGCACGAGCGCGCCGCCGCCGGGCTG
TTCCTCGGCTTCCAATATCCGGTCGAAATCCCCGGCGTGTCGAACGTCCAGTTCCTGCGCGAAAGCCTGAACGCTCAGCG
AAAGGCGCGTGGGCTGGAACCGCTGTCGGGCGGCGAGTTCCTGAAACTGGCGCGCGAGAAAGCCGCGCTGCTCAAGATGG
ACATGGACATGCTCAAGCGCCCCGTGAACGTCGGCTTTTCGGGCGGCGAGAAGAAGCGCAACGAGATGGTGCAGATGGGC
ATCCTCGACCCCCGCCTCGCGATCCTCGACGAAACGGACTCAGGGCTGGACATCGACGCGCTGCGCACCGTCGGCGACGG
GATCAATACGATCATGCGGCGTCCCGACAAGGCGGTGCTGCTGATTACGCATTATCAGCGGTTGCTCGACTATGTGCAGC
CCGATTTTGTGCATGTGCTCGCCGACGGCCGGATCGTGAAGTCGGGCGGGCCGGAGCTGGCGCGCGAGCTGGAAGCGCAT
GGTTATGCGGAGATTGCGGCGTGA

Upstream 100 bases:

>100_bases
GGAATGGAAGATTATGCTGTTGATCGGGGGCAACAGCTCGCCGACGGCACAGCTGTCGACCGCATTCACAAACGCTATTT
TCTGAAAATCGATGGACATG

Downstream 100 bases:

>100_bases
TGAGTGCGCGCCCCCTACTCCCTTCTCCCTTGAGGGGAGAAGGATATCGAGCCTTAGCCGCGAAGCGGGTTAGGCGTAGT
TGGATGAGGGTGGGCGAGCC

Product: FeS assembly ATPase SufC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MLKIENLHATVADKPILKGLSLAINAGEIHAIMGPNGAGKSTLSYVLGGRPGYEVTEGSVTFEGQDLLDMEPHERAAAGL
FLGFQYPVEIPGVSNVQFLRESLNAQRKARGLEPLSGGEFLKLAREKAALLKMDMDMLKRPVNVGFSGGEKKRNEMVQMG
ILDPRLAILDETDSGLDIDALRTVGDGINTIMRRPDKAVLLITHYQRLLDYVQPDFVHVLADGRIVKSGGPELARELEAH
GYAEIAA

Sequences:

>Translated_247_residues
MLKIENLHATVADKPILKGLSLAINAGEIHAIMGPNGAGKSTLSYVLGGRPGYEVTEGSVTFEGQDLLDMEPHERAAAGL
FLGFQYPVEIPGVSNVQFLRESLNAQRKARGLEPLSGGEFLKLAREKAALLKMDMDMLKRPVNVGFSGGEKKRNEMVQMG
ILDPRLAILDETDSGLDIDALRTVGDGINTIMRRPDKAVLLITHYQRLLDYVQPDFVHVLADGRIVKSGGPELARELEAH
GYAEIAA
>Mature_247_residues
MLKIENLHATVADKPILKGLSLAINAGEIHAIMGPNGAGKSTLSYVLGGRPGYEVTEGSVTFEGQDLLDMEPHERAAAGL
FLGFQYPVEIPGVSNVQFLRESLNAQRKARGLEPLSGGEFLKLAREKAALLKMDMDMLKRPVNVGFSGGEKKRNEMVQMG
ILDPRLAILDETDSGLDIDALRTVGDGINTIMRRPDKAVLLITHYQRLLDYVQPDFVHVLADGRIVKSGGPELARELEAH
GYAEIAA

Specific function: Has low ATPase activity. The SufBCD complex acts synergistically with SufE to stimulate the cysteine desulfurase activity of SufS. The SufBCD complex contributes to the assembly or repair of oxygen-labile iron-sulfur clusters under oxidative stress. May f

COG id: COG0396

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI153792144, Length=219, Percent_Identity=27.8538812785388, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI27436953, Length=222, Percent_Identity=30.1801801801802, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI73747915, Length=222, Percent_Identity=27.027027027027, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI42741659, Length=245, Percent_Identity=27.7551020408163, Blast_Score=65, Evalue=6e-11,
Organism=Escherichia coli, GI1787972, Length=246, Percent_Identity=58.9430894308943, Blast_Score=300, Evalue=7e-83,
Organism=Escherichia coli, GI87081709, Length=234, Percent_Identity=24.3589743589744, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1789891, Length=219, Percent_Identity=29.6803652968037, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI87082267, Length=191, Percent_Identity=30.3664921465969, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787370, Length=221, Percent_Identity=24.4343891402715, Blast_Score=67, Evalue=8e-13,
Organism=Escherichia coli, GI1788165, Length=234, Percent_Identity=25.6410256410256, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1790525, Length=222, Percent_Identity=28.3783783783784, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1788761, Length=235, Percent_Identity=23.4042553191489, Blast_Score=60, Evalue=1e-10,
Organism=Caenorhabditis elegans, GI212646699, Length=228, Percent_Identity=28.5087719298246, Blast_Score=74, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI17558664, Length=227, Percent_Identity=29.0748898678414, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI115533592, Length=243, Percent_Identity=26.3374485596708, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17541710, Length=239, Percent_Identity=25.9414225941423, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI193202349, Length=223, Percent_Identity=27.3542600896861, Blast_Score=64, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR010230 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 26841; Mature: 26841

Theoretical pI: Translated: 5.67; Mature: 5.67

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKIENLHATVADKPILKGLSLAINAGEIHAIMGPNGAGKSTLSYVLGGRPGYEVTEGSV
CEEECCCCEECCCCHHHCCCEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCEEECCEE
TFEGQDLLDMEPHERAAAGLFLGFQYPVEIPGVSNVQFLRESLNAQRKARGLEPLSGGEF
EECCCCCCCCCCHHHHHHHEEEEEECCEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCHH
LKLAREKAALLKMDMDMLKRPVNVGFSGGEKKRNEMVQMGILDPRLAILDETDSGLDIDA
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHH
LRTVGDGINTIMRRPDKAVLLITHYQRLLDYVQPDFVHVLADGRIVKSGGPELARELEAH
HHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCEEEEEECCEEEECCCHHHHHHHHHC
GYAEIAA
CCEEECC
>Mature Secondary Structure
MLKIENLHATVADKPILKGLSLAINAGEIHAIMGPNGAGKSTLSYVLGGRPGYEVTEGSV
CEEECCCCEECCCCHHHCCCEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCEEECCEE
TFEGQDLLDMEPHERAAAGLFLGFQYPVEIPGVSNVQFLRESLNAQRKARGLEPLSGGEF
EECCCCCCCCCCHHHHHHHEEEEEECCEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCHH
LKLAREKAALLKMDMDMLKRPVNVGFSGGEKKRNEMVQMGILDPRLAILDETDSGLDIDA
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHH
LRTVGDGINTIMRRPDKAVLLITHYQRLLDYVQPDFVHVLADGRIVKSGGPELARELEAH
HHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCEEEEEECCEEEECCCHHHHHHHHHC
GYAEIAA
CCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 10322040 [H]