| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is hisZ [H]
Identifier: 103486108
GI number: 103486108
Start: 625673
End: 626785
Strand: Reverse
Name: hisZ [H]
Synonym: Sala_0615
Alternate gene names: 103486108
Gene position: 626785-625673 (Counterclockwise)
Preceding gene: 103486109
Following gene: 103486101
Centisome position: 18.74
GC content: 71.52
Gene sequence:
>1113_bases ATGACCAAGGCCCCTGCCCTGCTGCCCGAAGGCCTCCGCGACCGCCTCCCCCGACAGGCCGAGGCCGCGTCGCGCGTCAC CCGCGCGCTGGTCGATGCGATGCGCGCGCATGGCTATGGCCGCGTGTCGCCGCCGCTCGCCGAGTTTCGCGAGACGCTGG GCAGCGACGACGACCGCTCCGGCCGCGACCTGCTCCGCTTCACCGATCCGGTGTCGCAGCGCACGCTCGCGCTGCGCCCC GACATCACGCGACAGGTCGGGCGGATCGCGACCTCGCTGCTCGCGGCATCACCGCGGCCGCTGCGCCTTTGCTATGCCGG ACAAGTCGTGAAGTTGCGCGCCAGCCAGCTTCGACCCGCACGCGAGATGTTACAGGTCGGCGCCGAGCTGATCGGCAGCG ACAGCGTCGCCGCCGCGCGCGAAATTGTGACCGTCGCGATCGACGCGCTCGAAGCCGCGGGCATCGGTCCCGTCACCATC GACTTCACCCTGCCCGATGTCGTCGATCTGCTCGCGTTCGGACCGCTTCCGGTCACGGCCGACCTCCAGCAGCTCCGCGA CGAACTCGATGCGAAGGACGCGGGCGCACTCGCGCGGATCGGCGCTGGCGCCTATCTGCCGCTGCTGCGCGCCACCGGCC CGTTCGACCGGGCGATCACCGACCTGCGCGCTTTCGACACCAGCGGCGTCCTCGGCGGACGCATCGACGCGCTGGAAGCC ATCGCGGCGCCGATCCGCGACCGCGTCACGCTGACGCTCGATCCGACCGAGCGCCACGGCTTCGCCTATCAAAGCTGGTT CGGCTTCCAGATCTTCGTGCCCGGACAGGGCGACGCGGTCGGCCGCGGCGGCGCCTATGCGATCCCCGTCGGCGAGGCTG AGGAGGCTGCGGTCGGCTTTTCGCTCTATCCCGATCCGCTGATCGACGCCGGGCTGGGCGCCGAAGATATGGCCGAGCGC CGCATTTTCCTGCCGCTCGGTCACGATGCAGCGGTCGCGGCGAGCCTGCGCGCCGACGGCTGGCGTACCGTCGCTGCGCT CACCGACGCCGACGACGCAACGCGGCTCGGCTGCGCCTATGTGCTGGGGGCCGACGGTCCTGTCGAGGCCTGA
Upstream 100 bases:
>100_bases ACTGCGACTAGGCGGCAAGCCACCAAGTCTCGTTGCCTCTCCCGACGGGAGAGGATTAGCGATGCTTCCAATTGAGACTC ACAGCCACTAAGGCCACCCC
Downstream 100 bases:
>100_bases AAGTCCGAAAGCCCGAAACGCGGGATCCCCTGATTGCCTCCCGGCGGATCGAGCACGGTCAGGTCGAGATCGACCGGTTC GCCGATCCATTGCGCCAGGC
Product: tRNA synthetase, class II (G, H, P and S)
Products: ATP; 5-phospho-alpha-D-ribose 1-diphosphate
Alternate protein names: NA
Number of amino acids: Translated: 370; Mature: 369
Protein sequence:
>370_residues MTKAPALLPEGLRDRLPRQAEAASRVTRALVDAMRAHGYGRVSPPLAEFRETLGSDDDRSGRDLLRFTDPVSQRTLALRP DITRQVGRIATSLLAASPRPLRLCYAGQVVKLRASQLRPAREMLQVGAELIGSDSVAAAREIVTVAIDALEAAGIGPVTI DFTLPDVVDLLAFGPLPVTADLQQLRDELDAKDAGALARIGAGAYLPLLRATGPFDRAITDLRAFDTSGVLGGRIDALEA IAAPIRDRVTLTLDPTERHGFAYQSWFGFQIFVPGQGDAVGRGGAYAIPVGEAEEAAVGFSLYPDPLIDAGLGAEDMAER RIFLPLGHDAAVAASLRADGWRTVAALTDADDATRLGCAYVLGADGPVEA
Sequences:
>Translated_370_residues MTKAPALLPEGLRDRLPRQAEAASRVTRALVDAMRAHGYGRVSPPLAEFRETLGSDDDRSGRDLLRFTDPVSQRTLALRP DITRQVGRIATSLLAASPRPLRLCYAGQVVKLRASQLRPAREMLQVGAELIGSDSVAAAREIVTVAIDALEAAGIGPVTI DFTLPDVVDLLAFGPLPVTADLQQLRDELDAKDAGALARIGAGAYLPLLRATGPFDRAITDLRAFDTSGVLGGRIDALEA IAAPIRDRVTLTLDPTERHGFAYQSWFGFQIFVPGQGDAVGRGGAYAIPVGEAEEAAVGFSLYPDPLIDAGLGAEDMAER RIFLPLGHDAAVAASLRADGWRTVAALTDADDATRLGCAYVLGADGPVEA >Mature_369_residues TKAPALLPEGLRDRLPRQAEAASRVTRALVDAMRAHGYGRVSPPLAEFRETLGSDDDRSGRDLLRFTDPVSQRTLALRPD ITRQVGRIATSLLAASPRPLRLCYAGQVVKLRASQLRPAREMLQVGAELIGSDSVAAAREIVTVAIDALEAAGIGPVTID FTLPDVVDLLAFGPLPVTADLQQLRDELDAKDAGALARIGAGAYLPLLRATGPFDRAITDLRAFDTSGVLGGRIDALEAI AAPIRDRVTLTLDPTERHGFAYQSWFGFQIFVPGQGDAVGRGGAYAIPVGEAEEAAVGFSLYPDPLIDAGLGAEDMAERR IFLPLGHDAAVAASLRADGWRTVAALTDADDATRLGCAYVLGADGPVEA
Specific function: Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine [H]
COG id: COG3705
COG function: function code E; ATP phosphoribosyltransferase involved in histidine biosynthesis
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II aminoacyl-tRNA synthetase family. HisZ subfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002314 - InterPro: IPR004516 [H]
Pfam domain/function: PF00587 tRNA-synt_2b [H]
EC number: 2.4.2.17
Molecular weight: Translated: 39137; Mature: 39006
Theoretical pI: Translated: 4.70; Mature: 4.70
Prosite motif: PS50862 AA_TRNA_LIGASE_II
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKAPALLPEGLRDRLPRQAEAASRVTRALVDAMRAHGYGRVSPPLAEFRETLGSDDDRS CCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCC GRDLLRFTDPVSQRTLALRPDITRQVGRIATSLLAASPRPLRLCYAGQVVKLRASQLRPA CCHHHHHCCCHHHCEEEECCHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEHHHHHCCHH REMLQVGAELIGSDSVAAAREIVTVAIDALEAAGIGPVTIDFTLPDVVDLLAFGPLPVTA HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHCCCCCCCH DLQQLRDELDAKDAGALARIGAGAYLPLLRATGPFDRAITDLRAFDTSGVLGGRIDALEA HHHHHHHHHCCCCCCHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHH IAAPIRDRVTLTLDPTERHGFAYQSWFGFQIFVPGQGDAVGRGGAYAIPVGEAEEAAVGF HHHCCCCCEEEEECCCCCCCCEEEEECCEEEEECCCCCCCCCCCEEEEECCCCHHHEECC SLYPDPLIDAGLGAEDMAERRIFLPLGHDAAVAASLRADGWRTVAALTDADDATRLGCAY CCCCCHHHHCCCCHHHHHCCEEEEECCCCHHHHHHHHCCCCEEEEEEECCCCCHHCCEEE VLGADGPVEA EECCCCCCCC >Mature Secondary Structure TKAPALLPEGLRDRLPRQAEAASRVTRALVDAMRAHGYGRVSPPLAEFRETLGSDDDRS CCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCC GRDLLRFTDPVSQRTLALRPDITRQVGRIATSLLAASPRPLRLCYAGQVVKLRASQLRPA CCHHHHHCCCHHHCEEEECCHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEHHHHHCCHH REMLQVGAELIGSDSVAAAREIVTVAIDALEAAGIGPVTIDFTLPDVVDLLAFGPLPVTA HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHCCCCCCCH DLQQLRDELDAKDAGALARIGAGAYLPLLRATGPFDRAITDLRAFDTSGVLGGRIDALEA HHHHHHHHHCCCCCCHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHH IAAPIRDRVTLTLDPTERHGFAYQSWFGFQIFVPGQGDAVGRGGAYAIPVGEAEEAAVGF HHHCCCCCEEEEECCCCCCCCEEEEECCEEEEECCCCCCCCCCCEEEEECCCCHHHEECC SLYPDPLIDAGLGAEDMAERRIFLPLGHDAAVAASLRADGWRTVAALTDADDATRLGCAY CCCCCHHHHCCCCHHHHHCCEEEEECCCCHHHHHHHHCCCCEEEEEEECCCCCHHCCEEE VLGADGPVEA EECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: 1-(5-phospho-D-ribosyl)-ATP; diphosphate
Specific reaction: 1-(5-phospho-D-ribosyl)-ATP + diphosphate = ATP + 5-phospho-alpha-D-ribose 1-diphosphate
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA