| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486100
Identifier: 103486100
GI number: 103486100
Start: 617263
End: 618393
Strand: Reverse
Name: 103486100
Synonym: Sala_0607
Alternate gene names: NA
Gene position: 618393-617263 (Counterclockwise)
Preceding gene: 103486101
Following gene: 103486099
Centisome position: 18.49
GC content: 70.47
Gene sequence:
>1131_bases ATGAAGCCCGAACTGACCCTGACCGCCCGCTCGACGTGGCGCGACCCGCCGCCCGAACGGTCGGCGGGGCCGGGGCGCGC TTTCTGGGCGGCGATCGGGGGCGTTTCGGTCGTCGCCTGCTTCGCCTTTCTGTTGTCGAGCGGGCAGTTTCGCGCGCCGT CGATCTTCGCCCCCTACAGCGTGTCGGTGCCGGTCGATTTCAGGCCCTATGACCCCGAACGCTGGGCGATCATGACCGCC GGGGATTATGAGGCGGCGCTGAAGATCGACCCCACGCTGCCCGACCCGCGCAGCATCGACTTTTCCGACGCCACCGCGCT GCCCCCCGCCGACCCCGCGGCGCTGCGCGAAGAGGCATTCGCCGGACCGCCTGCCAGGCCCTATGTCTTTCGCGGGCTGA CCGCGCTCGATCGCGAACGCGCGCATTATTGCCTGACCGCCGCCATCTATTACGAGGCGGCGTCCGAAAGCGACGACGGG ATGCGCGGCGTCGCGCAGACGATCATCAACCGCGTCCGCCATCCCAGCTTTCCGGGCACCGTGTGCGGCGTCGTTTTCCA GGGATCGCAGCGCGCCGGGGTGTGCCAGTTCACCTTTGCCTGCGACGGCGCGATGGCGCGCGCACCCGAACGGCGGAACT GGCTGCGCGCGAGCCGCGTGGCCTCGGCGGCGCTCGGCGGTCAGGTGTATGCCAAGGTGGGGCTGGCCACCCATTATCAT ACGCAGGCGATCTGGCCGCGCTGGGGCAAAAGCCTGGTGATGACCAACATCGTCGGCGCGCACATCTTTCACCGCTGGCG CGGGCGCTGGGGAATGCCCGACGCCTTTCGCGCACCCTATCTGGGCCGCGAACCAGTGCCGGGCCCCTATCTGCCGGTGG CCCAGCAGCTCGCGATCCTGAAGGGTCAGGGCATTGCGCCCGGTGCCGGCCCGCTTCCCGCACTGACTGGCGCCGCAGCA CCGCTCCCCGATGCCGCGCCCGCGCCGCTGCTGCCCGGTGCGCTGGCCCCAGCACCCCCCGGCGCCCCGGCCGCCGCAGC GCCCGCCGCGCCGAGCTATACCGACCCCCGTCTCAACCAATCTGGACAGGTCCGCGAGGAGTTTTCAAAGAGCGGAGAGT GGAAACGCTGA
Upstream 100 bases:
>100_bases CCAACGCACATGCCTCGCAACATTTTATAGGTGTTTCCGTGTATAGGTTGACCGGCCCGGCCTGTATCTCGCAGACGGAT CGAGGAATGATGCCGCCGTT
Downstream 100 bases:
>100_bases GCCGATCAGTCTAGGCTGTCGCCTTTCAAAGGAGCGAGGTGGCCGTGGGACATGTCAAAGGAATCGGCGGGCTGTTTTTC CGCGCGCGCAATCCCGAGGC
Product: cell wall hydrolase, SleB
Products: NA
Alternate protein names: Cell Wall Hydrolase Family; SleB-Like Protein; Hydrolase; Cell Wall Hydrolase; Spore Cortex-Lytic; Cell Wall Hydrolase Domain Protein; Spore-Cortex-Lytic Prepeptide; Cell Wall Hydrolase Sleb; Cell Wall Hydrolase Domain-Containing Protein; Cell Wall Hydrolase Family Protein
Number of amino acids: Translated: 376; Mature: 376
Protein sequence:
>376_residues MKPELTLTARSTWRDPPPERSAGPGRAFWAAIGGVSVVACFAFLLSSGQFRAPSIFAPYSVSVPVDFRPYDPERWAIMTA GDYEAALKIDPTLPDPRSIDFSDATALPPADPAALREEAFAGPPARPYVFRGLTALDRERAHYCLTAAIYYEAASESDDG MRGVAQTIINRVRHPSFPGTVCGVVFQGSQRAGVCQFTFACDGAMARAPERRNWLRASRVASAALGGQVYAKVGLATHYH TQAIWPRWGKSLVMTNIVGAHIFHRWRGRWGMPDAFRAPYLGREPVPGPYLPVAQQLAILKGQGIAPGAGPLPALTGAAA PLPDAAPAPLLPGALAPAPPGAPAAAAPAAPSYTDPRLNQSGQVREEFSKSGEWKR
Sequences:
>Translated_376_residues MKPELTLTARSTWRDPPPERSAGPGRAFWAAIGGVSVVACFAFLLSSGQFRAPSIFAPYSVSVPVDFRPYDPERWAIMTA GDYEAALKIDPTLPDPRSIDFSDATALPPADPAALREEAFAGPPARPYVFRGLTALDRERAHYCLTAAIYYEAASESDDG MRGVAQTIINRVRHPSFPGTVCGVVFQGSQRAGVCQFTFACDGAMARAPERRNWLRASRVASAALGGQVYAKVGLATHYH TQAIWPRWGKSLVMTNIVGAHIFHRWRGRWGMPDAFRAPYLGREPVPGPYLPVAQQLAILKGQGIAPGAGPLPALTGAAA PLPDAAPAPLLPGALAPAPPGAPAAAAPAAPSYTDPRLNQSGQVREEFSKSGEWKR >Mature_376_residues MKPELTLTARSTWRDPPPERSAGPGRAFWAAIGGVSVVACFAFLLSSGQFRAPSIFAPYSVSVPVDFRPYDPERWAIMTA GDYEAALKIDPTLPDPRSIDFSDATALPPADPAALREEAFAGPPARPYVFRGLTALDRERAHYCLTAAIYYEAASESDDG MRGVAQTIINRVRHPSFPGTVCGVVFQGSQRAGVCQFTFACDGAMARAPERRNWLRASRVASAALGGQVYAKVGLATHYH TQAIWPRWGKSLVMTNIVGAHIFHRWRGRWGMPDAFRAPYLGREPVPGPYLPVAQQLAILKGQGIAPGAGPLPALTGAAA PLPDAAPAPLLPGALAPAPPGAPAAAAPAAPSYTDPRLNQSGQVREEFSKSGEWKR
Specific function: Unknown
COG id: COG3773
COG function: function code M; Cell wall hydrolyses involved in spore germination
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40161; Mature: 40161
Theoretical pI: Translated: 9.47; Mature: 9.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPELTLTARSTWRDPPPERSAGPGRAFWAAIGGVSVVACFAFLLSSGQFRAPSIFAPYS CCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCEE VSVPVDFRPYDPERWAIMTAGDYEAALKIDPTLPDPRSIDFSDATALPPADPAALREEAF EECCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHC AGPPARPYVFRGLTALDRERAHYCLTAAIYYEAASESDDGMRGVAQTIINRVRHPSFPGT CCCCCCCHHHHCHHHHHHHHHHHEEEHHEEEHHCCCCCCHHHHHHHHHHHHHCCCCCCCC VCGVVFQGSQRAGVCQFTFACDGAMARAPERRNWLRASRVASAALGGQVYAKVGLATHYH EEEEEEECCCCCCEEEEEEECCCHHHCCCHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHH TQAIWPRWGKSLVMTNIVGAHIFHRWRGRWGMPDAFRAPYLGREPVPGPYLPVAQQLAIL HHHHCHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHH KGQGIAPGAGPLPALTGAAAPLPDAAPAPLLPGALAPAPPGAPAAAAPAAPSYTDPRLNQ HCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC SGQVREEFSKSGEWKR CCCHHHHHHHCCCCCC >Mature Secondary Structure MKPELTLTARSTWRDPPPERSAGPGRAFWAAIGGVSVVACFAFLLSSGQFRAPSIFAPYS CCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCEE VSVPVDFRPYDPERWAIMTAGDYEAALKIDPTLPDPRSIDFSDATALPPADPAALREEAF EECCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHC AGPPARPYVFRGLTALDRERAHYCLTAAIYYEAASESDDGMRGVAQTIINRVRHPSFPGT CCCCCCCHHHHCHHHHHHHHHHHEEEHHEEEHHCCCCCCHHHHHHHHHHHHHCCCCCCCC VCGVVFQGSQRAGVCQFTFACDGAMARAPERRNWLRASRVASAALGGQVYAKVGLATHYH EEEEEEECCCCCCEEEEEEECCCHHHCCCHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHH TQAIWPRWGKSLVMTNIVGAHIFHRWRGRWGMPDAFRAPYLGREPVPGPYLPVAQQLAIL HHHHCHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHH KGQGIAPGAGPLPALTGAAAPLPDAAPAPLLPGALAPAPPGAPAAAAPAAPSYTDPRLNQ HCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC SGQVREEFSKSGEWKR CCCHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA