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The map label for this gene is intZ [H]

Identifier: 103485937

GI number: 103485937

Start: 454701

End: 455954

Strand: Reverse

Name: intZ [H]

Synonym: Sala_0444

Alternate gene names: 103485937

Gene position: 455954-454701 (Counterclockwise)

Preceding gene: 103485938

Following gene: 103485935

Centisome position: 13.63

GC content: 57.81

Gene sequence:

>1254_bases
ATGCCTCTGACGGAGACTCAAGCCAAGAATGCAAAGCCACGCGAGAGAGCGTACAAGCTTGCCGACAGCGAAGGCTTGTT
CCTGCTCGTCCAGCCGAACGGCACGAAGCTTTGGCGGATGAAATACCGATTTGCAGGCAAGGAGAAGTTGCTGTCGTTTG
GCGCTTATCCGGCGTTGGGGATCGCCGCCGCCCGGGACAAACGCAAAGCGGCCAAGGCGCTCCTTGCCGAGGGCAAGGAT
CCAATGAAGGCCAAGAGGGAGGTTATATCGGAGAACGGTGACACCTTCTACATGGTGGCGAAACGTTGGCACGAGAACCG
CCAGTCGGCGTTGAATCCGGCACATGCCGAACGTGTCTGGTCACGAATGGAGCGGGACGTGTTCCCCTCCCTAGGACAGA
GGCTGATCCATGAGATCACTGCCCCCGAGGTCCTGGAGATGATCCGCAAGATTGAGATACGAGGCGCGCTGGATATCAGT
CGGCGTGCCAAGCAAGGGGTAGGGCAGGTCTTTCAGTTCGCGATTGCTTGCGGGCTGGCATCCAGCGATCCCACTGCTCA
CCTTAGTGGAGCCCTCAAGCCCCGGCCCAGGGTGAAGCACATGAGCCGCCTTCCTCTTGATGAAGTGCCTGCGTTCCTCG
AAAAGCTCCGAGCATATCAAGAGGAAGGTGACCGGCGCTCGGCAATCACCCGCGATGCGGTACTATTCGCCTTGCTTACC
TGGGTCAGGACAAAAGAGCTTCGACTGGCTGTCAAATCCGAATTTGAAAATCTCGATGGTACGGATACCGTTTGGCGAAT
TCCGGCTGCGCGCATGAAGATGGGGCGTGAACACCTTGTGCCACTCTCCGCTCAGGCCGCACTCATTGCTAGAAAAATGG
TATCGACGGCGACCGGTGATCACCTGTTTCCCGGGACCCACCCAGACAAGCCGTTGTCTGAAAACACGATGATCTATGCG
CTTTACCGCCTTGGCTATCATAGTAGGCAGACCATCCACGGCTTTCGAGGGCTCGCCAGCACATGGGCGAACGAGCAGTT
GGTTGAGTTTGGCAAGCCAGCGATGTGGATCCGGAAGTACCATGAGGATTGGGTCGAGATGCAGCTCGCTCATTCAGAGA
AGAATGATGTGCGGGGGGCTTACAACGCGGCAGAGTATCTCGCACCCCGCCGGCGAATGATGCAGGACTGGGCTGATTTC
CTCGATGGGCGCAAGGTGCTCGACATCAGGAAGGGACGAAAGCGGGCTGCGTGA

Upstream 100 bases:

>100_bases
CGCGTCCGCATGTGCCCATGGCCTTCCACATGCAGCCAGATTTGGTGTGGGGGTATTTTGGGGGTAGTTTTGCGGTGTAT
CGGAAAGGAGCGATACCCCC

Downstream 100 bases:

>100_bases
CGCCCGTGAGTAGAAGCATTCAATCCGATCAAGTGCCACTCGGTGCAGTTCGTACTAAAACTGCCAGTGCCGCAGGACGT
CGCGGACATATCCGGGTGTT

Product: phage integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 417; Mature: 416

Protein sequence:

>417_residues
MPLTETQAKNAKPRERAYKLADSEGLFLLVQPNGTKLWRMKYRFAGKEKLLSFGAYPALGIAAARDKRKAAKALLAEGKD
PMKAKREVISENGDTFYMVAKRWHENRQSALNPAHAERVWSRMERDVFPSLGQRLIHEITAPEVLEMIRKIEIRGALDIS
RRAKQGVGQVFQFAIACGLASSDPTAHLSGALKPRPRVKHMSRLPLDEVPAFLEKLRAYQEEGDRRSAITRDAVLFALLT
WVRTKELRLAVKSEFENLDGTDTVWRIPAARMKMGREHLVPLSAQAALIARKMVSTATGDHLFPGTHPDKPLSENTMIYA
LYRLGYHSRQTIHGFRGLASTWANEQLVEFGKPAMWIRKYHEDWVEMQLAHSEKNDVRGAYNAAEYLAPRRRMMQDWADF
LDGRKVLDIRKGRKRAA

Sequences:

>Translated_417_residues
MPLTETQAKNAKPRERAYKLADSEGLFLLVQPNGTKLWRMKYRFAGKEKLLSFGAYPALGIAAARDKRKAAKALLAEGKD
PMKAKREVISENGDTFYMVAKRWHENRQSALNPAHAERVWSRMERDVFPSLGQRLIHEITAPEVLEMIRKIEIRGALDIS
RRAKQGVGQVFQFAIACGLASSDPTAHLSGALKPRPRVKHMSRLPLDEVPAFLEKLRAYQEEGDRRSAITRDAVLFALLT
WVRTKELRLAVKSEFENLDGTDTVWRIPAARMKMGREHLVPLSAQAALIARKMVSTATGDHLFPGTHPDKPLSENTMIYA
LYRLGYHSRQTIHGFRGLASTWANEQLVEFGKPAMWIRKYHEDWVEMQLAHSEKNDVRGAYNAAEYLAPRRRMMQDWADF
LDGRKVLDIRKGRKRAA
>Mature_416_residues
PLTETQAKNAKPRERAYKLADSEGLFLLVQPNGTKLWRMKYRFAGKEKLLSFGAYPALGIAAARDKRKAAKALLAEGKDP
MKAKREVISENGDTFYMVAKRWHENRQSALNPAHAERVWSRMERDVFPSLGQRLIHEITAPEVLEMIRKIEIRGALDISR
RAKQGVGQVFQFAIACGLASSDPTAHLSGALKPRPRVKHMSRLPLDEVPAFLEKLRAYQEEGDRRSAITRDAVLFALLTW
VRTKELRLAVKSEFENLDGTDTVWRIPAARMKMGREHLVPLSAQAALIARKMVSTATGDHLFPGTHPDKPLSENTMIYAL
YRLGYHSRQTIHGFRGLASTWANEQLVEFGKPAMWIRKYHEDWVEMQLAHSEKNDVRGAYNAAEYLAPRRRMMQDWADFL
DGRKVLDIRKGRKRAA

Specific function: Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI145693166, Length=409, Percent_Identity=38.1418092909535, Blast_Score=243, Evalue=2e-65,
Organism=Escherichia coli, GI1788974, Length=408, Percent_Identity=35.2941176470588, Blast_Score=239, Evalue=2e-64,
Organism=Escherichia coli, GI1788690, Length=403, Percent_Identity=34.7394540942928, Blast_Score=234, Evalue=9e-63,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 47509; Mature: 47377

Theoretical pI: Translated: 10.62; Mature: 10.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLTETQAKNAKPRERAYKLADSEGLFLLVQPNGTKLWRMKYRFAGKEKLLSFGAYPALG
CCCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCEEEEEHHHHCCHHHHHHHCCCCHHH
IAAARDKRKAAKALLAEGKDPMKAKREVISENGDTFYMVAKRWHENRQSALNPAHAERVW
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHCCHHHHHHHH
SRMERDVFPSLGQRLIHEITAPEVLEMIRKIEIRGALDISRRAKQGVGQVFQFAIACGLA
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCC
SSDPTAHLSGALKPRPRVKHMSRLPLDEVPAFLEKLRAYQEEGDRRSAITRDAVLFALLT
CCCCCHHHCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
WVRTKELRLAVKSEFENLDGTDTVWRIPAARMKMGREHLVPLSAQAALIARKMVSTATGD
HHHHHHHHHHHHHHHCCCCCCCCEEECCHHHHHCCHHHCCCCHHHHHHHHHHHHHHCCCC
HLFPGTHPDKPLSENTMIYALYRLGYHSRQTIHGFRGLASTWANEQLVEFGKPAMWIRKY
CCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHH
HEDWVEMQLAHSEKNDVRGAYNAAEYLAPRRRMMQDWADFLDGRKVLDIRKGRKRAA
HHHHHHHHHHHCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHCCCCCC
>Mature Secondary Structure 
PLTETQAKNAKPRERAYKLADSEGLFLLVQPNGTKLWRMKYRFAGKEKLLSFGAYPALG
CCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCEEEEEHHHHCCHHHHHHHCCCCHHH
IAAARDKRKAAKALLAEGKDPMKAKREVISENGDTFYMVAKRWHENRQSALNPAHAERVW
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHCCHHHHHHHH
SRMERDVFPSLGQRLIHEITAPEVLEMIRKIEIRGALDISRRAKQGVGQVFQFAIACGLA
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCC
SSDPTAHLSGALKPRPRVKHMSRLPLDEVPAFLEKLRAYQEEGDRRSAITRDAVLFALLT
CCCCCHHHCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
WVRTKELRLAVKSEFENLDGTDTVWRIPAARMKMGREHLVPLSAQAALIARKMVSTATGD
HHHHHHHHHHHHHHHCCCCCCCCEEECCHHHHHCCHHHCCCCHHHHHHHHHHHHHHCCCC
HLFPGTHPDKPLSENTMIYALYRLGYHSRQTIHGFRGLASTWANEQLVEFGKPAMWIRKY
CCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHH
HEDWVEMQLAHSEKNDVRGAYNAAEYLAPRRRMMQDWADFLDGRKVLDIRKGRKRAA
HHHHHHHHHHHCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]