| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103485934
Identifier: 103485934
GI number: 103485934
Start: 450421
End: 452895
Strand: Reverse
Name: 103485934
Synonym: Sala_0441
Alternate gene names: NA
Gene position: 452895-450421 (Counterclockwise)
Preceding gene: 103485935
Following gene: 103485930
Centisome position: 13.54
GC content: 64.61
Gene sequence:
>2475_bases ATGTCCAATTCTTCCCTCGCTTTTGCATTCGATGAACCATCACCGCCCGCTGTTGCGACGGCGGCCCAGGTCATGGCTTC AGAGCTCGCAGCAGGCCGCGCGCTGTCACGCAGCGACGTGACGCGTATCATGAGCGAGCACTTCGGGGGCAGCGATGCTC TCGGGCGTTGGTCGGTGCGTGACGCCCACGCAGCTCTAGAGCTGGCACAGGTTCAATACCTGCAAGCGTGCGATCAGATC CAGCTCTCGAGCCCGATCGACGAGGCGGAACAGTTCTTCTTCTCCCTCGATGACCGAATTCCGACCCAGACCAATCGCAG CGACGAGCAGATCGAATGGCAACAATTCGCAACGCCGCCGCGCCTTGCTTGGCTCGCTGCCCGGGCTTGCGCGCTGGTCG CCGACGAACTCGTGCTCGAACCCTCGGCCGGTACCGGTATGCTCGCAGTCTGGGCGACCAAAGCCGGCACGCACCTTGCC TTGAACGAAATCTCGCCGCTGCGCCGCGACTGCCTGACTGCTGTGTTCCCGGCTGCCCACGTGACCGGACATGATGCCGA GCTGATCGACGAATTGCTCGATCCGGCCATCGCACCGAGCGTCGTGCTGATGAACCCGCCGTATTCTCATGGGATCGAGC GGGGCCACGATGGCCGCACCGGAGCGAGGCATCTGCGCTCGGCCTGGAACCGGCTTGCCCCCGGCGGGCGGCTGGTCGCG ATCATGCCTGAATGGTTCGATTGCGCGCGGTTTCTGGCCCGGGCGAAGGGGCCAGTGTCGATGCGGCTCAATGCCGCGGT CGAACGTGCCTTCATCAAGAACGGCACCGGGATCACCACGCGGCTGCTGGTTCTCGATAAGGTGGAAGGCGTCAACGAGC CCGTCGCAATTCGCACGAACGAGTTCCGCCAGCTGGTCGATCTTGTCGATGCCTTGCCTGCTCGCGCCAGCAGGCAGGCT ATCGCTGAACAATCGACTCTTCCGGCTCGTGCGCCGTTCCGTCTGCTAACCGCGCCACGCAGACCACCCCCGGCCCCGTC AACGACCACGCGAGCCGCGTCGATGACCATCGGCGCATTGACCTACGAGGCGCTTGAAAAACCTGCGCCGCTTGGAGCCC AGGTCGGCCACTATCTGCCCTATCGCCCAAGCAGGATCGTGATCAATGGCGCGGCCGGGCATCCAACGCCGCTCGTCGAG TCCGTCGCCATGGGGTCGATTTCGGCACCCAAGCCGGACGCGGTGCCGCAGCTGCCTGACGGGCTTATCGTCAAGGGACT GCTGTCTGCTGCCCAGGCAGAGACCCTGATCTACGCCGCCAGCGCTCACGCCCGCGATTTGCATGGCCGGTTCGAGCCCG AGGACAAGGGCTGTTCGCTCAAGGCCTCGGCAGAAGGTCAGGTCTACCGGCAGGGCTATTTCCTCGGGGACGGAACGGGT GCCGGGAAGGGCCGTCAGGTTGCGAGCGTCATTCTCGACCGCTGGGTGCGCGGGGAACGCCGCCATATCTGGATTTCGAA GAACGAGGCGTTGCTCGAAGATGCCCGGCGCGACTGGGCTGCGCTTGGGGGCCTCCCGATCGACATCCAAGCTCTAGCGT CCTGGAAACTCGGCACCCCCATCGCCATGCGCGACGGGATCCTCTTCGTCACCTATCCGACCCTTCGGTCTGGGCGGAGC GATGCAACACGTCTCGACCAAATCCTCGCCTGGGCCGGTGAGGAGTTCAACGGCGTGATCGTGTTCGACGAAGCGCACGC CATGGCCAATGCTGCCGGCGGTGAAGGATCGCGGGGCAAGGTCAAGGGATCGGAGCAGGGCATTGCCGGTGTGCGCCTGC AGAACCTCCTGCCCCGGGCGAGGGTACTCTACGCTTCGGCAACCGGTGCATCAGACGTCAACAACCTGGCCTATGCGACG CGCCTCGGGCTCTGGGGTCCGGAGACCGCCTTCGCCAATCGCGAGGCCTTCGTTACCGACATTCGCGACGGCGGCATCGC CGCGATGGAACTCGTCGCGCGGGACCTCAAGTCGCTCGGCCTCTACACCGCCCGGGCCCTTTCGTTCGCTGGTGTCGAAT ACGAGATCCTCGAGCATTGCCTGACCGAGGATCAGATCTCGGTCTACGATGCCTATGCCGAGGCCTGGGCGATCATTCAC GCCAACCTGCGCGAAGCGCTCGAGGCCACACGGATCGTTGACAGCGAGACCGGGGGCACGCTCAACTCGGGTGCCAAGTC GGCAGCGCTGTCGATCTTCGAGGGAACGAAGCAGCGCTTCTTCGCGCAGCTGCTTCTGTCTATGAAGCTCCCCAGCTTGC TGCCCGCGATCGATACGGCGATTGCCGATGGTCACGCTGTGGTCGTCCAGCTGGTCTCGACGGCAGAAGCCATGCTCGAC CGGCGGCTTGCCGACCTCTCCGACGAGGAGCGCGAAGCGCTGGAGATCGACCTGTCCCCGCGGGAATACATCTAA
Upstream 100 bases:
>100_bases AAGTCCCGGCTTGCCCGTAAACCTGACCCGTTGGGCAGAGGGGAGGGGGCCTTCGGCTGATTGAGGCCTGCCCGGCGCAG GACCTCGTCAGGAGGTTCCC
Downstream 100 bases:
>100_bases TGTGGAGCTCCACATTACACATATTCTTTGCAGTCGCAGTTTATGTCGAGCGTGGCGGCGAGAGACGCAGGTTTCCTTCG GTTTTCCATGATTTCACTCC
Product: putative methylase/helicase
Products: NA
Alternate protein names: Probably Methylase/Helicase
Number of amino acids: Translated: 824; Mature: 823
Protein sequence:
>824_residues MSNSSLAFAFDEPSPPAVATAAQVMASELAAGRALSRSDVTRIMSEHFGGSDALGRWSVRDAHAALELAQVQYLQACDQI QLSSPIDEAEQFFFSLDDRIPTQTNRSDEQIEWQQFATPPRLAWLAARACALVADELVLEPSAGTGMLAVWATKAGTHLA LNEISPLRRDCLTAVFPAAHVTGHDAELIDELLDPAIAPSVVLMNPPYSHGIERGHDGRTGARHLRSAWNRLAPGGRLVA IMPEWFDCARFLARAKGPVSMRLNAAVERAFIKNGTGITTRLLVLDKVEGVNEPVAIRTNEFRQLVDLVDALPARASRQA IAEQSTLPARAPFRLLTAPRRPPPAPSTTTRAASMTIGALTYEALEKPAPLGAQVGHYLPYRPSRIVINGAAGHPTPLVE SVAMGSISAPKPDAVPQLPDGLIVKGLLSAAQAETLIYAASAHARDLHGRFEPEDKGCSLKASAEGQVYRQGYFLGDGTG AGKGRQVASVILDRWVRGERRHIWISKNEALLEDARRDWAALGGLPIDIQALASWKLGTPIAMRDGILFVTYPTLRSGRS DATRLDQILAWAGEEFNGVIVFDEAHAMANAAGGEGSRGKVKGSEQGIAGVRLQNLLPRARVLYASATGASDVNNLAYAT RLGLWGPETAFANREAFVTDIRDGGIAAMELVARDLKSLGLYTARALSFAGVEYEILEHCLTEDQISVYDAYAEAWAIIH ANLREALEATRIVDSETGGTLNSGAKSAALSIFEGTKQRFFAQLLLSMKLPSLLPAIDTAIADGHAVVVQLVSTAEAMLD RRLADLSDEEREALEIDLSPREYI
Sequences:
>Translated_824_residues MSNSSLAFAFDEPSPPAVATAAQVMASELAAGRALSRSDVTRIMSEHFGGSDALGRWSVRDAHAALELAQVQYLQACDQI QLSSPIDEAEQFFFSLDDRIPTQTNRSDEQIEWQQFATPPRLAWLAARACALVADELVLEPSAGTGMLAVWATKAGTHLA LNEISPLRRDCLTAVFPAAHVTGHDAELIDELLDPAIAPSVVLMNPPYSHGIERGHDGRTGARHLRSAWNRLAPGGRLVA IMPEWFDCARFLARAKGPVSMRLNAAVERAFIKNGTGITTRLLVLDKVEGVNEPVAIRTNEFRQLVDLVDALPARASRQA IAEQSTLPARAPFRLLTAPRRPPPAPSTTTRAASMTIGALTYEALEKPAPLGAQVGHYLPYRPSRIVINGAAGHPTPLVE SVAMGSISAPKPDAVPQLPDGLIVKGLLSAAQAETLIYAASAHARDLHGRFEPEDKGCSLKASAEGQVYRQGYFLGDGTG AGKGRQVASVILDRWVRGERRHIWISKNEALLEDARRDWAALGGLPIDIQALASWKLGTPIAMRDGILFVTYPTLRSGRS DATRLDQILAWAGEEFNGVIVFDEAHAMANAAGGEGSRGKVKGSEQGIAGVRLQNLLPRARVLYASATGASDVNNLAYAT RLGLWGPETAFANREAFVTDIRDGGIAAMELVARDLKSLGLYTARALSFAGVEYEILEHCLTEDQISVYDAYAEAWAIIH ANLREALEATRIVDSETGGTLNSGAKSAALSIFEGTKQRFFAQLLLSMKLPSLLPAIDTAIADGHAVVVQLVSTAEAMLD RRLADLSDEEREALEIDLSPREYI >Mature_823_residues SNSSLAFAFDEPSPPAVATAAQVMASELAAGRALSRSDVTRIMSEHFGGSDALGRWSVRDAHAALELAQVQYLQACDQIQ LSSPIDEAEQFFFSLDDRIPTQTNRSDEQIEWQQFATPPRLAWLAARACALVADELVLEPSAGTGMLAVWATKAGTHLAL NEISPLRRDCLTAVFPAAHVTGHDAELIDELLDPAIAPSVVLMNPPYSHGIERGHDGRTGARHLRSAWNRLAPGGRLVAI MPEWFDCARFLARAKGPVSMRLNAAVERAFIKNGTGITTRLLVLDKVEGVNEPVAIRTNEFRQLVDLVDALPARASRQAI AEQSTLPARAPFRLLTAPRRPPPAPSTTTRAASMTIGALTYEALEKPAPLGAQVGHYLPYRPSRIVINGAAGHPTPLVES VAMGSISAPKPDAVPQLPDGLIVKGLLSAAQAETLIYAASAHARDLHGRFEPEDKGCSLKASAEGQVYRQGYFLGDGTGA GKGRQVASVILDRWVRGERRHIWISKNEALLEDARRDWAALGGLPIDIQALASWKLGTPIAMRDGILFVTYPTLRSGRSD ATRLDQILAWAGEEFNGVIVFDEAHAMANAAGGEGSRGKVKGSEQGIAGVRLQNLLPRARVLYASATGASDVNNLAYATR LGLWGPETAFANREAFVTDIRDGGIAAMELVARDLKSLGLYTARALSFAGVEYEILEHCLTEDQISVYDAYAEAWAIIHA NLREALEATRIVDSETGGTLNSGAKSAALSIFEGTKQRFFAQLLLSMKLPSLLPAIDTAIADGHAVVVQLVSTAEAMLDR RLADLSDEEREALEIDLSPREYI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI269846807, Length=435, Percent_Identity=34.0229885057471, Blast_Score=238, Evalue=2e-62, Organism=Homo sapiens, GI269846812, Length=435, Percent_Identity=34.0229885057471, Blast_Score=238, Evalue=2e-62, Organism=Homo sapiens, GI154355002, Length=430, Percent_Identity=36.9767441860465, Blast_Score=220, Evalue=5e-57, Organism=Homo sapiens, GI154355004, Length=430, Percent_Identity=36.9767441860465, Blast_Score=219, Evalue=7e-57, Organism=Caenorhabditis elegans, GI17553078, Length=449, Percent_Identity=32.739420935412, Blast_Score=229, Evalue=3e-60, Organism=Drosophila melanogaster, GI161077796, Length=445, Percent_Identity=34.1573033707865, Blast_Score=237, Evalue=3e-62, Organism=Drosophila melanogaster, GI24641704, Length=445, Percent_Identity=34.1573033707865, Blast_Score=237, Evalue=3e-62, Organism=Drosophila melanogaster, GI161077794, Length=445, Percent_Identity=34.1573033707865, Blast_Score=236, Evalue=3e-62, Organism=Drosophila melanogaster, GI19921354, Length=432, Percent_Identity=34.2592592592593, Blast_Score=226, Evalue=5e-59,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 88699; Mature: 88567
Theoretical pI: Translated: 5.66; Mature: 5.66
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNSSLAFAFDEPSPPAVATAAQVMASELAAGRALSRSDVTRIMSEHFGGSDALGRWSVR CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCH DAHAALELAQVQYLQACDQIQLSSPIDEAEQFFFSLDDRIPTQTNRSDEQIEWQQFATPP HHHHHHHHHHHHHHHHHCCEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCH RLAWLAARACALVADELVLEPSAGTGMLAVWATKAGTHLALNEISPLRRDCLTAVFPAAH HHHHHHHHHHHHHHHHHEECCCCCCCEEEEEEECCCCEEEHHHCCHHHHHHHHHHHCHHH VTGHDAELIDELLDPAIAPSVVLMNPPYSHGIERGHDGRTGARHLRSAWNRLAPGGRLVA CCCCCHHHHHHHHCHHHCCEEEEECCCHHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEE IMPEWFDCARFLARAKGPVSMRLNAAVERAFIKNGTGITTRLLVLDKVEGVNEPVAIRTN ECCCHHHHHHHHHHCCCCCEEEHHHHHHHHHHCCCCCCEEEEEEEHHHCCCCCCEEEEHH EFRQLVDLVDALPARASRQAIAEQSTLPARAPFRLLTAPRRPPPAPSTTTRAASMTIGAL HHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHH TYEALEKPAPLGAQVGHYLPYRPSRIVINGAAGHPTPLVESVAMGSISAPKPDAVPQLPD HHHHHHCCCCCCHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCC GLIVKGLLSAAQAETLIYAASAHARDLHGRFEPEDKGCSLKASAEGQVYRQGYFLGDGTG HHHHHHHHHHHHHHHEEEEECCCHHHCCCCCCCCCCCCEEEECCCCCEEECEEEEECCCC AGKGRQVASVILDRWVRGERRHIWISKNEALLEDARRDWAALGGLPIDIQALASWKLGTP CCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEHHHHHCCCCCCC IAMRDGILFVTYPTLRSGRSDATRLDQILAWAGEEFNGVIVFDEAHAMANAAGGEGSRGK EEECCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECHHHHHHCCCCCCCCCC VKGSEQGIAGVRLQNLLPRARVLYASATGASDVNNLAYATRLGLWGPETAFANREAFVTD CCCCCCCCCHHHHHHHCCCHHEEEEECCCCCHHHHHHHHHHHCCCCCCHHHCCCCCEEEE IRDGGIAAMELVARDLKSLGLYTARALSFAGVEYEILEHCLTEDQISVYDAYAEAWAIIH CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHH ANLREALEATRIVDSETGGTLNSGAKSAALSIFEGTKQRFFAQLLLSMKLPSLLPAIDTA HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH IADGHAVVVQLVSTAEAMLDRRLADLSDEEREALEIDLSPREYI HCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCC >Mature Secondary Structure SNSSLAFAFDEPSPPAVATAAQVMASELAAGRALSRSDVTRIMSEHFGGSDALGRWSVR CCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCH DAHAALELAQVQYLQACDQIQLSSPIDEAEQFFFSLDDRIPTQTNRSDEQIEWQQFATPP HHHHHHHHHHHHHHHHHCCEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCH RLAWLAARACALVADELVLEPSAGTGMLAVWATKAGTHLALNEISPLRRDCLTAVFPAAH HHHHHHHHHHHHHHHHHEECCCCCCCEEEEEEECCCCEEEHHHCCHHHHHHHHHHHCHHH VTGHDAELIDELLDPAIAPSVVLMNPPYSHGIERGHDGRTGARHLRSAWNRLAPGGRLVA CCCCCHHHHHHHHCHHHCCEEEEECCCHHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEE IMPEWFDCARFLARAKGPVSMRLNAAVERAFIKNGTGITTRLLVLDKVEGVNEPVAIRTN ECCCHHHHHHHHHHCCCCCEEEHHHHHHHHHHCCCCCCEEEEEEEHHHCCCCCCEEEEHH EFRQLVDLVDALPARASRQAIAEQSTLPARAPFRLLTAPRRPPPAPSTTTRAASMTIGAL HHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHH TYEALEKPAPLGAQVGHYLPYRPSRIVINGAAGHPTPLVESVAMGSISAPKPDAVPQLPD HHHHHHCCCCCCHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCC GLIVKGLLSAAQAETLIYAASAHARDLHGRFEPEDKGCSLKASAEGQVYRQGYFLGDGTG HHHHHHHHHHHHHHHEEEEECCCHHHCCCCCCCCCCCCEEEECCCCCEEECEEEEECCCC AGKGRQVASVILDRWVRGERRHIWISKNEALLEDARRDWAALGGLPIDIQALASWKLGTP CCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEHHHHHCCCCCCC IAMRDGILFVTYPTLRSGRSDATRLDQILAWAGEEFNGVIVFDEAHAMANAAGGEGSRGK EEECCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECHHHHHHCCCCCCCCCC VKGSEQGIAGVRLQNLLPRARVLYASATGASDVNNLAYATRLGLWGPETAFANREAFVTD CCCCCCCCCHHHHHHHCCCHHEEEEECCCCCHHHHHHHHHHHCCCCCCHHHCCCCCEEEE IRDGGIAAMELVARDLKSLGLYTARALSFAGVEYEILEHCLTEDQISVYDAYAEAWAIIH CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHH ANLREALEATRIVDSETGGTLNSGAKSAALSIFEGTKQRFFAQLLLSMKLPSLLPAIDTA HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH IADGHAVVVQLVSTAEAMLDRRLADLSDEEREALEIDLSPREYI HCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA