| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103485930
Identifier: 103485930
GI number: 103485930
Start: 444934
End: 446769
Strand: Reverse
Name: 103485930
Synonym: Sala_0437
Alternate gene names: NA
Gene position: 446769-444934 (Counterclockwise)
Preceding gene: 103485934
Following gene: 103485929
Centisome position: 13.36
GC content: 64.32
Gene sequence:
>1836_bases ATGGAAAACCGAAGGAAACCTGCGTCTCTCGCCGCCACGCTCGACATAAACTGCGACTGCAAAGAATATGTGATCGACTA TCTCGCCAAGAGCTTTCCTGTTCGTCTGATGGCGGTGTTCACCGACGAAAACGGCAATCCGCGCTCCGAGCCGATGACTG ACGAGGATGGCGCACCTGTGCTGTGCCGCTCCGCGCTGGCCGCGCGCGACCGGATGATCGAACAGCTCTGCGCCCTGCCG CCGATTGCTACTGCGCTCGATGCCATCATCGAACGGTTCGGCGTTGACCAGGTGGCGGAAGTCACCGGTCGCACACGTCG GCTCATCGTCGGCCGCGACGGTCGCCAGAAACTCCAATCCCGCTCGCCGCGCGCCAATGTGGCCGAAACCCAGGCCTTTA TGGACGGCGCGAAGCGCATCCTGGTGTTCTCCGATGCCGGGGGAACGGGGCGCAGCTACCATGCTGATCTTGCCGCCAGG AACCAGGCCCGCCGGGTCCACTTTCTGCTCGAGCCGGGCTGGCGAGCTGACGCCGCGATCCAGGGGCTTGGCCGGACCAA TCGCACCAATCAGGCATCAGCCCCGCTGTTCCGGCCCGTGACCACCGATGTGCGCGGCGAGCGGCGGTTCATTTCGACGA TCGCCCGCCGCCTCGACAGCTTGGGCGCTCTGACGCGCGGGCAGCGCCAGACCGGTGGCCAGAACCTCTTCGATCCGGCC GACAATCTCGAAAGCATCTACGCCAAGGAGGCGCTCCACCGCTGGTTCGGCCTCTTGTTCACAGGCAAGCTCGAAGCCGT CAGCCTCGGGCGCTTTCAGGAGCTGACAGGTCTCCGGATCGAAGCGCCTGATGGTTCGATGGTCGATGACCTGCCGTCGA TCCAGCGGTGGCTCAACCGCATTCTTGCGCTTCCCATCGCCCTGCAGAACGCGATCTTTGACGAGTTCATGGGGCTGGTC GAAGCGCGCATCGATGCCGCCCGGCAGGCTGGCACCCTCGATCTCGGCTTGGAGACCATCGCGGTTGAGGACTTCACGGT CCTGTCGGACACGCTGCTGCGCACAGATCCAGCATCGGGCGCGACGACCCATCTCCTCGAACTGGAAATCGCCAGGGCCC TGAAGCCGCTCACGCTGACGCGGCTCGAGGAGATTCACGGCATCACCGGGCAGCGGCAACGCCCGGTTCGGAACGCCCGC TCAGGTCGAGTCGCCTTACTGGTGCCCGCCCGAAGTATCCTTGCCGATGACGGTACGCGCGTGGCCCGCTTCGAATTGCT TCGCCCGATGAAGCACAGCCACATCACCGAGGATCAGCTCGCTGAGAGCAGCTGGGAGGGGATCTCCGTCGACGTTTTCC GCGAGGCCTGGGTCGCCGAGGTGGAAGAGGCCAGGACCAGCCACAAGCGCGAGCGCCTCTATCTCGCGACGGGCCTACTG CTTCCGGTCTGGGACAAGCTCCCTTCGGATTTCGTCAGGGTTAGTCGCATCTCGGCGGCGGATGGCCGTTCGCTCCTTGG CCGCGAGGTTCCCGCCCATTGTGTGCCCGAACTGTGCCGAGCGCTGGGTCTGGAACGCGAGCAAACGCTTTCCGCCGACG ACATTGTCCAGACCGTCCTGGCAACGGGGAGGGCCATGGAGTTCACGGGCCGCGAGCTGCTCATGGTCAAGCGCAGCCTG GTCAATGGGTCACAGCGACTTGAGCTTACGGGATGGAGTGCTGCTCGGCTCGACTGGTACAAGGCCCAAGGCTGCTTTAC CGAGATCATCCGCTATCAGACCCGGCTCTTCGTACCGATCGAGGGCGCGGCGAGTGTGATTGCCAGACTGGCATGA
Upstream 100 bases:
>100_bases CGGAGCCGGGCCGCTCGAAACGACAATAATGATCTTGATCGCATGTTGGTTCCTTCGACTTGTTCAGGTCGAGGGAACCG TAATTATCTGGAGTGAAATC
Downstream 100 bases:
>100_bases TCGGCAGGGGTTCCTTGCCAAATGGCATTATTTGCCATATATGATGCCATATGGAGAACTGCCATGCTGGCTCTGCAACC CGTTGATACTGCCGTTACCG
Product: putative methylase/helicase
Products: NA
Alternate protein names: Probably Methylase/Helicase
Number of amino acids: Translated: 611; Mature: 611
Protein sequence:
>611_residues MENRRKPASLAATLDINCDCKEYVIDYLAKSFPVRLMAVFTDENGNPRSEPMTDEDGAPVLCRSALAARDRMIEQLCALP PIATALDAIIERFGVDQVAEVTGRTRRLIVGRDGRQKLQSRSPRANVAETQAFMDGAKRILVFSDAGGTGRSYHADLAAR NQARRVHFLLEPGWRADAAIQGLGRTNRTNQASAPLFRPVTTDVRGERRFISTIARRLDSLGALTRGQRQTGGQNLFDPA DNLESIYAKEALHRWFGLLFTGKLEAVSLGRFQELTGLRIEAPDGSMVDDLPSIQRWLNRILALPIALQNAIFDEFMGLV EARIDAARQAGTLDLGLETIAVEDFTVLSDTLLRTDPASGATTHLLELEIARALKPLTLTRLEEIHGITGQRQRPVRNAR SGRVALLVPARSILADDGTRVARFELLRPMKHSHITEDQLAESSWEGISVDVFREAWVAEVEEARTSHKRERLYLATGLL LPVWDKLPSDFVRVSRISAADGRSLLGREVPAHCVPELCRALGLEREQTLSADDIVQTVLATGRAMEFTGRELLMVKRSL VNGSQRLELTGWSAARLDWYKAQGCFTEIIRYQTRLFVPIEGAASVIARLA
Sequences:
>Translated_611_residues MENRRKPASLAATLDINCDCKEYVIDYLAKSFPVRLMAVFTDENGNPRSEPMTDEDGAPVLCRSALAARDRMIEQLCALP PIATALDAIIERFGVDQVAEVTGRTRRLIVGRDGRQKLQSRSPRANVAETQAFMDGAKRILVFSDAGGTGRSYHADLAAR NQARRVHFLLEPGWRADAAIQGLGRTNRTNQASAPLFRPVTTDVRGERRFISTIARRLDSLGALTRGQRQTGGQNLFDPA DNLESIYAKEALHRWFGLLFTGKLEAVSLGRFQELTGLRIEAPDGSMVDDLPSIQRWLNRILALPIALQNAIFDEFMGLV EARIDAARQAGTLDLGLETIAVEDFTVLSDTLLRTDPASGATTHLLELEIARALKPLTLTRLEEIHGITGQRQRPVRNAR SGRVALLVPARSILADDGTRVARFELLRPMKHSHITEDQLAESSWEGISVDVFREAWVAEVEEARTSHKRERLYLATGLL LPVWDKLPSDFVRVSRISAADGRSLLGREVPAHCVPELCRALGLEREQTLSADDIVQTVLATGRAMEFTGRELLMVKRSL VNGSQRLELTGWSAARLDWYKAQGCFTEIIRYQTRLFVPIEGAASVIARLA >Mature_611_residues MENRRKPASLAATLDINCDCKEYVIDYLAKSFPVRLMAVFTDENGNPRSEPMTDEDGAPVLCRSALAARDRMIEQLCALP PIATALDAIIERFGVDQVAEVTGRTRRLIVGRDGRQKLQSRSPRANVAETQAFMDGAKRILVFSDAGGTGRSYHADLAAR NQARRVHFLLEPGWRADAAIQGLGRTNRTNQASAPLFRPVTTDVRGERRFISTIARRLDSLGALTRGQRQTGGQNLFDPA DNLESIYAKEALHRWFGLLFTGKLEAVSLGRFQELTGLRIEAPDGSMVDDLPSIQRWLNRILALPIALQNAIFDEFMGLV EARIDAARQAGTLDLGLETIAVEDFTVLSDTLLRTDPASGATTHLLELEIARALKPLTLTRLEEIHGITGQRQRPVRNAR SGRVALLVPARSILADDGTRVARFELLRPMKHSHITEDQLAESSWEGISVDVFREAWVAEVEEARTSHKRERLYLATGLL LPVWDKLPSDFVRVSRISAADGRSLLGREVPAHCVPELCRALGLEREQTLSADDIVQTVLATGRAMEFTGRELLMVKRSL VNGSQRLELTGWSAARLDWYKAQGCFTEIIRYQTRLFVPIEGAASVIARLA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI269846812, Length=501, Percent_Identity=29.940119760479, Blast_Score=159, Evalue=5e-39, Organism=Homo sapiens, GI269846807, Length=501, Percent_Identity=29.940119760479, Blast_Score=159, Evalue=7e-39, Organism=Homo sapiens, GI154355002, Length=496, Percent_Identity=28.6290322580645, Blast_Score=135, Evalue=1e-31, Organism=Homo sapiens, GI154355004, Length=496, Percent_Identity=28.6290322580645, Blast_Score=135, Evalue=1e-31, Organism=Caenorhabditis elegans, GI17553078, Length=318, Percent_Identity=33.3333333333333, Blast_Score=139, Evalue=5e-33, Organism=Drosophila melanogaster, GI161077796, Length=294, Percent_Identity=37.7551020408163, Blast_Score=159, Evalue=7e-39, Organism=Drosophila melanogaster, GI24641704, Length=294, Percent_Identity=37.7551020408163, Blast_Score=159, Evalue=8e-39, Organism=Drosophila melanogaster, GI161077794, Length=294, Percent_Identity=37.7551020408163, Blast_Score=158, Evalue=1e-38, Organism=Drosophila melanogaster, GI19921354, Length=500, Percent_Identity=28.4, Blast_Score=151, Evalue=1e-36,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 67771; Mature: 67771
Theoretical pI: Translated: 8.08; Mature: 8.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MENRRKPASLAATLDINCDCKEYVIDYLAKSFPVRLMAVFTDENGNPRSEPMTDEDGAPV CCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCH LCRSALAARDRMIEQLCALPPIATALDAIIERFGVDQVAEVTGRTRRLIVGRDGRQKLQS HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHCCCCEEEEEECCHHHHHHC RSPRANVAETQAFMDGAKRILVFSDAGGTGRSYHADLAARNQARRVHFLLEPGWRADAAI CCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCEEHHHHHCCCCCEEEEEECCCCCCCHHH QGLGRTNRTNQASAPLFRPVTTDVRGERRFISTIARRLDSLGALTRGQRQTGGQNLFDPA HCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCH DNLESIYAKEALHRWFGLLFTGKLEAVSLGRFQELTGLRIEAPDGSMVDDLPSIQRWLNR HHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHCCCEEECCCCCHHHHHHHHHHHHHH ILALPIALQNAIFDEFMGLVEARIDAARQAGTLDLGLETIAVEDFTVLSDTLLRTDPASG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHCCCCCCC ATTHLLELEIARALKPLTLTRLEEIHGITGQRQRPVRNARSGRVALLVPARSILADDGTR CHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHHCCCCCEEEEECCHHHHCCCCCH VARFELLRPMKHSHITEDQLAESSWEGISVDVFREAWVAEVEEARTSHKRERLYLATGLL HHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEHHHHCCH LPVWDKLPSDFVRVSRISAADGRSLLGREVPAHCVPELCRALGLEREQTLSADDIVQTVL HHHHHHCCHHHHHHHHHCCCCCHHHHCCCCCHHHHHHHHHHHCCCHHHCCCHHHHHHHHH ATGRAMEFTGRELLMVKRSLVNGSQRLELTGWSAARLDWYKAQGCFTEIIRYQTRLFVPI HCCCCEECCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHEEEEEE EGAASVIARLA CHHHHHHHHCC >Mature Secondary Structure MENRRKPASLAATLDINCDCKEYVIDYLAKSFPVRLMAVFTDENGNPRSEPMTDEDGAPV CCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCH LCRSALAARDRMIEQLCALPPIATALDAIIERFGVDQVAEVTGRTRRLIVGRDGRQKLQS HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHCCCCEEEEEECCHHHHHHC RSPRANVAETQAFMDGAKRILVFSDAGGTGRSYHADLAARNQARRVHFLLEPGWRADAAI CCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCEEHHHHHCCCCCEEEEEECCCCCCCHHH QGLGRTNRTNQASAPLFRPVTTDVRGERRFISTIARRLDSLGALTRGQRQTGGQNLFDPA HCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCH DNLESIYAKEALHRWFGLLFTGKLEAVSLGRFQELTGLRIEAPDGSMVDDLPSIQRWLNR HHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHCCCEEECCCCCHHHHHHHHHHHHHH ILALPIALQNAIFDEFMGLVEARIDAARQAGTLDLGLETIAVEDFTVLSDTLLRTDPASG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHCCCCCCC ATTHLLELEIARALKPLTLTRLEEIHGITGQRQRPVRNARSGRVALLVPARSILADDGTR CHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHHCCCCCEEEEECCHHHHCCCCCH VARFELLRPMKHSHITEDQLAESSWEGISVDVFREAWVAEVEEARTSHKRERLYLATGLL HHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEHHHHCCH LPVWDKLPSDFVRVSRISAADGRSLLGREVPAHCVPELCRALGLEREQTLSADDIVQTVL HHHHHHCCHHHHHHHHHCCCCCHHHHCCCCCHHHHHHHHHHHCCCHHHCCCHHHHHHHHH ATGRAMEFTGRELLMVKRSLVNGSQRLELTGWSAARLDWYKAQGCFTEIIRYQTRLFVPI HCCCCEECCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHEEEEEE EGAASVIARLA CHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA