Click here to switch to the map view.

The map label for this gene is hspD [H]

Identifier: 103485879

GI number: 103485879

Start: 396334

End: 396843

Strand: Reverse

Name: hspD [H]

Synonym: Sala_0384

Alternate gene names: 103485879

Gene position: 396843-396334 (Counterclockwise)

Preceding gene: 103485883

Following gene: 103485878

Centisome position: 11.86

GC content: 59.02

Gene sequence:

>510_bases
ATGCCCAGATTGCTCAACAAGGAGGATTTGGAAATGAGGACTGCATTTGATTTGACCCCCTATCGCCGCTCGACGGTCGG
TTTCGATCGGCTCTTCGATGCGCTCGAGAACAGCTTCCGCGCCGAGACGCAGGATGGCTACCCACCCTTCGACATCGTTC
GCACCGGCGAGGACAGCTACCGGATCACTCTGGCGGTTGCCGGCTTCCGTCCGGACGAAATCGACATCACTTCACATCAG
AACCAGCTCGTCATCTCCGGTCAGAAGATCGAGAAGGACGAAGACGGTGTTGAATTCGTTCACCGCGGTATCGCTGCCCG
CGCGTTCGAGCGCCGGTTCCAGCTGGCCGATTATGTCGAAGTGCGCGATGCGGATTACGAGCACGGCATGTTGACGATTT
CGCTCCAGCGGATCGTCCCGGAATCGCTCAAGCGGCGCAAAATCGCCATCGGAAGCCGCGAGCATGTCAATGACGACACG
CCGCAGCTGCCCGAAGACAAGGCGGGCTAA

Upstream 100 bases:

>100_bases
AGGACCACCAGATGGCAAGACATGTTGCAGCCCCTACGACGAAATTCATTGGTATGCCGGTTGGACAGAGGGCGTCGGCT
CTTGGTTCCCGGCGCCTCTC

Downstream 100 bases:

>100_bases
GTCCAAATCATCGGGCAAATCCTCGGCGGGGTGGGTGCCACCGCACCTGCCCCGCTTGACGAAGCTTTGCCTGAACCAGT
CGGAAAATAGGAGGAATGTC

Product: heat shock protein Hsp20

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 168

Protein sequence:

>169_residues
MPRLLNKEDLEMRTAFDLTPYRRSTVGFDRLFDALENSFRAETQDGYPPFDIVRTGEDSYRITLAVAGFRPDEIDITSHQ
NQLVISGQKIEKDEDGVEFVHRGIAARAFERRFQLADYVEVRDADYEHGMLTISLQRIVPESLKRRKIAIGSREHVNDDT
PQLPEDKAG

Sequences:

>Translated_169_residues
MPRLLNKEDLEMRTAFDLTPYRRSTVGFDRLFDALENSFRAETQDGYPPFDIVRTGEDSYRITLAVAGFRPDEIDITSHQ
NQLVISGQKIEKDEDGVEFVHRGIAARAFERRFQLADYVEVRDADYEHGMLTISLQRIVPESLKRRKIAIGSREHVNDDT
PQLPEDKAG
>Mature_168_residues
PRLLNKEDLEMRTAFDLTPYRRSTVGFDRLFDALENSFRAETQDGYPPFDIVRTGEDSYRITLAVAGFRPDEIDITSHQN
QLVISGQKIEKDEDGVEFVHRGIAARAFERRFQLADYVEVRDADYEHGMLTISLQRIVPESLKRRKIAIGSREHVNDDTP
QLPEDKAG

Specific function: Unknown

COG id: COG0071

COG function: function code O; Molecular chaperone (small heat shock protein)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the small heat shock protein (HSP20) family [H]

Homologues:

Organism=Escherichia coli, GI1790122, Length=140, Percent_Identity=44.2857142857143, Blast_Score=126, Evalue=7e-31,
Organism=Escherichia coli, GI87082316, Length=143, Percent_Identity=34.965034965035, Blast_Score=100, Evalue=7e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002068
- InterPro:   IPR008978 [H]

Pfam domain/function: PF00011 HSP20 [H]

EC number: NA

Molecular weight: Translated: 19442; Mature: 19311

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: PS01031 HSP20

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRLLNKEDLEMRTAFDLTPYRRSTVGFDRLFDALENSFRAETQDGYPPFDIVRTGEDSY
CCCCCCCCCCCHHHHCCCCCCCCHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCE
RITLAVAGFRPDEIDITSHQNQLVISGQKIEKDEDGVEFVHRGIAARAFERRFQLADYVE
EEEEEEECCCCCEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VRDADYEHGMLTISLQRIVPESLKRRKIAIGSREHVNDDTPQLPEDKAG
HCCCCCCCCEEEEEHHHHCHHHHHHHECCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PRLLNKEDLEMRTAFDLTPYRRSTVGFDRLFDALENSFRAETQDGYPPFDIVRTGEDSY
CCCCCCCCCCHHHHCCCCCCCCHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCE
RITLAVAGFRPDEIDITSHQNQLVISGQKIEKDEDGVEFVHRGIAARAFERRFQLADYVE
EEEEEEECCCCCEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VRDADYEHGMLTISLQRIVPESLKRRKIAIGSREHVNDDTPQLPEDKAG
HCCCCCCCCEEEEEHHHHCHHHHHHHECCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12597275 [H]