| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103485883
Identifier: 103485883
GI number: 103485883
Start: 401535
End: 402176
Strand: Reverse
Name: 103485883
Synonym: Sala_0388
Alternate gene names: NA
Gene position: 402176-401535 (Counterclockwise)
Preceding gene: 103485884
Following gene: 103485879
Centisome position: 12.02
GC content: 54.05
Gene sequence:
>642_bases ATGTCCGATCGGGAGGATGATCAAACAGTCGACACGGTTGAAATCCGGGAAGTGGTTGGAATTGTTTACAATCATAACGC TCTTGAAGAAATGGCAACACAACTGGTTGCCGCAGGGGTGGACCGCAATGACATATCCCTCATGGCCGATTGGAATACGG TCATCGAAAAACTCGGCCTGACCTATCCCGATCCGGGCGCGGTCGTCGATAACCCCGAGACTCCGAGGCGGCGCCTAACG ACCAGGGATGAACATGCCACGGTCACCGGAACCGTTTTTGGAACCTTGATTGCGACCGGTGCCTTAGCAGCCGGAGTACC CATCATAGCTTCAGGAGGTGCAATTCCGCTTGCACTTGCGGCATGTACTGCTGGCGGCGGAATAGGAGCGATGTTGGCCA AACTTGTTCGCAAGAATTTGCTGACGCGGGATGATGCCGATGCAATCGAGCATGATATAAATCGCGGCGGCATTGCAGTT TTTGTCAGGGTGGATAATGCGGATGAGGAGCAACGCGCAATCGACATCATGAGGCGCAATGGTGCGCATAATGTCCACGC TCATACCATCACATTACGCAAGGAATTGAGCGACCTCCCGCTTGCAAACGTACAGCCCGATCCATGGCTAGCCGACGACT GA
Upstream 100 bases:
>100_bases GACCACCGGCTAAGCACAAGCGCTTCAAATCTGGTCTCGTAATATGATTTGCGTGAAAGACTTGCTTTTGCGCTTCCAAC GATGAGAAAGCACGCAGAAT
Downstream 100 bases:
>100_bases CACGACAGATAAGGCCTTGCCGCTCATTGTAAATTCGTGCGCAGGGCAGACATCAAGCATGGTCTGCAGCATCGGAAGTC AAGGTGCAGGAAATTTTCTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 213; Mature: 212
Protein sequence:
>213_residues MSDREDDQTVDTVEIREVVGIVYNHNALEEMATQLVAAGVDRNDISLMADWNTVIEKLGLTYPDPGAVVDNPETPRRRLT TRDEHATVTGTVFGTLIATGALAAGVPIIASGGAIPLALAACTAGGGIGAMLAKLVRKNLLTRDDADAIEHDINRGGIAV FVRVDNADEEQRAIDIMRRNGAHNVHAHTITLRKELSDLPLANVQPDPWLADD
Sequences:
>Translated_213_residues MSDREDDQTVDTVEIREVVGIVYNHNALEEMATQLVAAGVDRNDISLMADWNTVIEKLGLTYPDPGAVVDNPETPRRRLT TRDEHATVTGTVFGTLIATGALAAGVPIIASGGAIPLALAACTAGGGIGAMLAKLVRKNLLTRDDADAIEHDINRGGIAV FVRVDNADEEQRAIDIMRRNGAHNVHAHTITLRKELSDLPLANVQPDPWLADD >Mature_212_residues SDREDDQTVDTVEIREVVGIVYNHNALEEMATQLVAAGVDRNDISLMADWNTVIEKLGLTYPDPGAVVDNPETPRRRLTT RDEHATVTGTVFGTLIATGALAAGVPIIASGGAIPLALAACTAGGGIGAMLAKLVRKNLLTRDDADAIEHDINRGGIAVF VRVDNADEEQRAIDIMRRNGAHNVHAHTITLRKELSDLPLANVQPDPWLADD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22815; Mature: 22684
Theoretical pI: Translated: 4.48; Mature: 4.48
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDREDDQTVDTVEIREVVGIVYNHNALEEMATQLVAAGVDRNDISLMADWNTVIEKLGL CCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHCC TYPDPGAVVDNPETPRRRLTTRDEHATVTGTVFGTLIATGALAAGVPIIASGGAIPLALA CCCCCCCCCCCCCCCHHHCCCCCCCCEEHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHH ACTAGGGIGAMLAKLVRKNLLTRDDADAIEHDINRGGIAVFVRVDNADEEQRAIDIMRRN HHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHC GAHNVHAHTITLRKELSDLPLANVQPDPWLADD CCCCEEEEEEEEHHHHHHCCCCCCCCCCCCCCC >Mature Secondary Structure SDREDDQTVDTVEIREVVGIVYNHNALEEMATQLVAAGVDRNDISLMADWNTVIEKLGL CCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHCC TYPDPGAVVDNPETPRRRLTTRDEHATVTGTVFGTLIATGALAAGVPIIASGGAIPLALA CCCCCCCCCCCCCCCHHHCCCCCCCCEEHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHH ACTAGGGIGAMLAKLVRKNLLTRDDADAIEHDINRGGIAVFVRVDNADEEQRAIDIMRRN HHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHC GAHNVHAHTITLRKELSDLPLANVQPDPWLADD CCCCEEEEEEEEHHHHHHCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA