| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103485834
Identifier: 103485834
GI number: 103485834
Start: 342320
End: 342562
Strand: Reverse
Name: 103485834
Synonym: Sala_0339
Alternate gene names: NA
Gene position: 342562-342320 (Counterclockwise)
Preceding gene: 103485835
Following gene: 103485833
Centisome position: 10.24
GC content: 54.32
Gene sequence:
>243_bases ATGAGCGAAGCCACCGTGTCCGACGAACAGCTGCGTCTTTTCATCGAGCGTATCGAGCGTCTGGAAGAAGAAAAAAAGGG CATCGCCGACGATATCCGCGACACCTATAATGAAGCCAAATCACAGGGTTATGACCCCAAGATCATGCGCCAGATCGTGC GCCTGCGCAAATTGCCGCCGCACGACCGCAAGGAAATGGAAGCGATCCTCGACGTTTATAAATCGGCGCTCGGCATCGAC TGA
Upstream 100 bases:
>100_bases ACACGGATGGAAGAAAGCATGGCGAAGAATCCACGGGCCCGCTAGGGACGCGCCGAGGGCGATTCCCGTCCCATCATCTT TCATCCCAGCGGAGTATAAA
Downstream 100 bases:
>100_bases CGCGCGGTCCACCAGCCAGGCCACCAACCAGGCCACCAACCCGGAGAGTGACGATGTTCAGCACCACCACCAACAATATC GAAGGCCATCCGGTCCGCGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 80; Mature: 79
Protein sequence:
>80_residues MSEATVSDEQLRLFIERIERLEEEKKGIADDIRDTYNEAKSQGYDPKIMRQIVRLRKLPPHDRKEMEAILDVYKSALGID
Sequences:
>Translated_80_residues MSEATVSDEQLRLFIERIERLEEEKKGIADDIRDTYNEAKSQGYDPKIMRQIVRLRKLPPHDRKEMEAILDVYKSALGID >Mature_79_residues SEATVSDEQLRLFIERIERLEEEKKGIADDIRDTYNEAKSQGYDPKIMRQIVRLRKLPPHDRKEMEAILDVYKSALGID
Specific function: Unknown
COG id: COG3750
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0335 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018753 [H]
Pfam domain/function: PF10073 DUF2312 [H]
EC number: NA
Molecular weight: Translated: 9406; Mature: 9275
Theoretical pI: Translated: 4.93; Mature: 4.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEATVSDEQLRLFIERIERLEEEKKGIADDIRDTYNEAKSQGYDPKIMRQIVRLRKLPP CCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC HDRKEMEAILDVYKSALGID CCHHHHHHHHHHHHHHHCCC >Mature Secondary Structure SEATVSDEQLRLFIERIERLEEEKKGIADDIRDTYNEAKSQGYDPKIMRQIVRLRKLPP CCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC HDRKEMEAILDVYKSALGID CCHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA