Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103485835

Identifier: 103485835

GI number: 103485835

Start: 342618

End: 342947

Strand: Reverse

Name: 103485835

Synonym: Sala_0340

Alternate gene names: NA

Gene position: 342947-342618 (Counterclockwise)

Preceding gene: 103485842

Following gene: 103485834

Centisome position: 10.25

GC content: 67.27

Gene sequence:

>330_bases
ATGTCATGCAGCGATCAACAGGCCGCCCCGAATGATGCCCTCGACACCCTCGACGATGCCGTCGCGGCCGCCGCTTTCCG
CCGCCTCGTCCGCCTGCTCCGGCATCGCCACGACGCCGCGAACATCGACCTGATGGGGCTCGCGGGTTTCTGCCGCAACT
GCCTCGGCGACTGGATCGCGGAAGCAGGCGACATGGACAGGGAAACGGGCCGCGCCATCGTCCACGGCATGCCGACGGCG
GAGTGGAAAGCCCGCTTTCACACCGCCGCCACCCCCGAACAGCTCACACGGATGGAAGAAAGCATGGCGAAGAATCCACG
GGCCCGCTAG

Upstream 100 bases:

>100_bases
ACGATTGCTCCGCTTGCCTGATTGCCGTTACGGTGTGCGAGGCATGGCGCGTCGCGCGCCCCAGCGCAACCACCGTATAG
CTATTCAGGAAAGTCCGAAC

Downstream 100 bases:

>100_bases
GGACGCGCCGAGGGCGATTCCCGTCCCATCATCTTTCATCCCAGCGGAGTATAAAATGAGCGAAGCCACCGTGTCCGACG
AACAGCTGCGTCTTTTCATC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 109; Mature: 108

Protein sequence:

>109_residues
MSCSDQQAAPNDALDTLDDAVAAAAFRRLVRLLRHRHDAANIDLMGLAGFCRNCLGDWIAEAGDMDRETGRAIVHGMPTA
EWKARFHTAATPEQLTRMEESMAKNPRAR

Sequences:

>Translated_109_residues
MSCSDQQAAPNDALDTLDDAVAAAAFRRLVRLLRHRHDAANIDLMGLAGFCRNCLGDWIAEAGDMDRETGRAIVHGMPTA
EWKARFHTAATPEQLTRMEESMAKNPRAR
>Mature_108_residues
SCSDQQAAPNDALDTLDDAVAAAAFRRLVRLLRHRHDAANIDLMGLAGFCRNCLGDWIAEAGDMDRETGRAIVHGMPTAE
WKARFHTAATPEQLTRMEESMAKNPRAR

Specific function: Unknown

COG id: COG3492

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12050; Mature: 11919

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
8.3 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
7.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSCSDQQAAPNDALDTLDDAVAAAAFRRLVRLLRHRHDAANIDLMGLAGFCRNCLGDWIA
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
EAGDMDRETGRAIVHGMPTAEWKARFHTAATPEQLTRMEESMAKNPRAR
HCCCCCHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SCSDQQAAPNDALDTLDDAVAAAAFRRLVRLLRHRHDAANIDLMGLAGFCRNCLGDWIA
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
EAGDMDRETGRAIVHGMPTAEWKARFHTAATPEQLTRMEESMAKNPRAR
HCCCCCHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA