| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103485796
Identifier: 103485796
GI number: 103485796
Start: 300409
End: 301032
Strand: Reverse
Name: 103485796
Synonym: Sala_0301
Alternate gene names: NA
Gene position: 301032-300409 (Counterclockwise)
Preceding gene: 103485803
Following gene: 103485795
Centisome position: 9.0
GC content: 66.99
Gene sequence:
>624_bases ATGACGACCGGGGTGACGAAATCGGAAGCGGCGCGAAGCGGCGCCGAGCGGATCGACGGCCGCCGCGCGCGCAGCCGGTC GAGCCACAAGCGCATCGTCGAGGCGATGATGGAGCTGATCGTCGCGGGCGATTTGTCGCCGAGCGCCGCGCGTGTCGCTG AGGAAGCGGGCATCGGCCTGCGTACCGTGTTCCGCCATTTCGACGATATGGACGCGCTCTATTCCGAAATCACCGCGACG GTCACCGACCGCGTGATGCCGATCGTCACGGCGCCCTATCCCGACCAGCCGTGGCGCGCCAATGTCCGCGAACTGGTGCG GCGCCGCATTCGTGTCTTTGAAACGACGCTGCCCTTTCGCCTTGCGGCGAACATCAAACGCTATCAGTCGCCCTTCCTGA TGGGTCAGTACAGCCGTGTCGTGATGCTCGAACGCGAGCTGATCCTGCGCCTGCTGCCCGGTCATGTGCTCACCGACCGC ATCACCGTCGAGGCGCTGTGCGCCGCGCTTTCCTTCCACACCTGGCGCACGCTGCGCCACGACCAGGGGCTGTCGGCCGA GGAAGCGGGCGAGGTGCTGGGGCAAATGGTGGCGGCGCTGCTGGCGACGGTGGCCGACGAATGA
Upstream 100 bases:
>100_bases TTCGGCTTGCCCGAAAACTATTGGCACTATATGTGTCATTATATTCGCCGAAGTGCAAGATCGTTTGACGTCGGCGGCGT GCTGGGCCAGCGAGGATGCG
Downstream 100 bases:
>100_bases TCCGCAGCGCCGCCTTGCCCGCGCTGCTTCTGATTGGCGCACTCGCAGCGTGCGGCGATGATCCCGACACTCCGCTGGCC GAAACCAAGCCCCCCGAATG
Product: TetR family transcriptional regulator
Products: NA
Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Transcriptional Regulatory Protein
Number of amino acids: Translated: 207; Mature: 206
Protein sequence:
>207_residues MTTGVTKSEAARSGAERIDGRRARSRSSHKRIVEAMMELIVAGDLSPSAARVAEEAGIGLRTVFRHFDDMDALYSEITAT VTDRVMPIVTAPYPDQPWRANVRELVRRRIRVFETTLPFRLAANIKRYQSPFLMGQYSRVVMLERELILRLLPGHVLTDR ITVEALCAALSFHTWRTLRHDQGLSAEEAGEVLGQMVAALLATVADE
Sequences:
>Translated_207_residues MTTGVTKSEAARSGAERIDGRRARSRSSHKRIVEAMMELIVAGDLSPSAARVAEEAGIGLRTVFRHFDDMDALYSEITAT VTDRVMPIVTAPYPDQPWRANVRELVRRRIRVFETTLPFRLAANIKRYQSPFLMGQYSRVVMLERELILRLLPGHVLTDR ITVEALCAALSFHTWRTLRHDQGLSAEEAGEVLGQMVAALLATVADE >Mature_206_residues TTGVTKSEAARSGAERIDGRRARSRSSHKRIVEAMMELIVAGDLSPSAARVAEEAGIGLRTVFRHFDDMDALYSEITATV TDRVMPIVTAPYPDQPWRANVRELVRRRIRVFETTLPFRLAANIKRYQSPFLMGQYSRVVMLERELILRLLPGHVLTDRI TVEALCAALSFHTWRTLRHDQGLSAEEAGEVLGQMVAALLATVADE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23175; Mature: 23044
Theoretical pI: Translated: 9.11; Mature: 9.11
Prosite motif: PS50977 HTH_TETR_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTGVTKSEAARSGAERIDGRRARSRSSHKRIVEAMMELIVAGDLSPSAARVAEEAGIGL CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHH RTVFRHFDDMDALYSEITATVTDRVMPIVTAPYPDQPWRANVRELVRRRIRVFETTLPFR HHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHCCCHH LAANIKRYQSPFLMGQYSRVVMLERELILRLLPGHVLTDRITVEALCAALSFHTWRTLRH HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH DQGLSAEEAGEVLGQMVAALLATVADE CCCCCHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure TTGVTKSEAARSGAERIDGRRARSRSSHKRIVEAMMELIVAGDLSPSAARVAEEAGIGL CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHH RTVFRHFDDMDALYSEITATVTDRVMPIVTAPYPDQPWRANVRELVRRRIRVFETTLPFR HHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHCCCHH LAANIKRYQSPFLMGQYSRVVMLERELILRLLPGHVLTDRITVEALCAALSFHTWRTLRH HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH DQGLSAEEAGEVLGQMVAALLATVADE CCCCCHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA