Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103485777

Identifier: 103485777

GI number: 103485777

Start: 280014

End: 280763

Strand: Reverse

Name: 103485777

Synonym: Sala_0282

Alternate gene names: NA

Gene position: 280763-280014 (Counterclockwise)

Preceding gene: 103485778

Following gene: 103485770

Centisome position: 8.39

GC content: 70.0

Gene sequence:

>750_bases
ATGATCCGCGGTTTCCTTACCCGGCGCGCCGAATGGCCCGCGCATGTCCCCGATCCCGACGCGCCGCCGCCGCTCATGCT
GCTGTGGCGCGAGATGGGATCGCTCGCGCGCGCAATCGGCGGGCGCATCCGCCCGCTGCCCCCCGAACCCAACCCCGACA
GCGACTATCCGCCGGTGATGGTGCTCCCCGGTTTCCTGTCGGGTGACTGGGCGACCAAGGCCCTGCGCGCCGACCTCCGC
CGCGCGGGCTTCCGCTGTTATGCGTGGGGCCTCGGCTTCAACCGCGGCGCGACCCCCGACATCATCGAACGGATCGACGG
GCGCGTGCAATGGATCATCGACCGCACCGGCTTCGCCCCCGCGCTGGTGGGGTGGAGCCTTGGCGGCATTTACGCGCGCG
AATATGCCAAGCGCCACCCCGACAAGGTCGCGCGCGTCGTCACGCTGGGTTCGCCTTTCTCGGGCAGCCGACGCGCCAAC
CGCGCGTGGCGGCTCTATCACCTCATCGCGCGCCACCCGGTCGACAATCCGCCGATCGACTTTCACCCGGCGCCGCGTCC
CGAAATGCCGACCTTCGCGCTCTGGTCAAAGCATGACGGCGTCGTCGCGGTGAACAGCGCGCGCGGGCTGCCGCACGAGA
GCGATCGCGCGGTCGAGGTCGATTGCAGCCATATGGGCTTTGCCTATGCCCCCAATTCGGTCGCCGCGATCGTCCGGGCG
CTGACCGAAGAGGTGGCGCCGTCGGAGTGA

Upstream 100 bases:

>100_bases
CGCGAGGTCGAGGTGCGCGAGGACGGCACCGTCTGGCTGCTCACCGACGGCGACGACGGCAGGCTGGTGAAGCTGGTTCC
GAAACGATAAGAGCCGCCGC

Downstream 100 bases:

>100_bases
TCGCCGTGCCGCCGCGGGCAGCGGAGACGTTGGCAGCGGCGGAAACGACGGGCGGCGCCGGGACATCGTTCCAGATCCGC
CTCGCCGCAGTCATGTGAAA

Product: hypothetical protein

Products: NA

Alternate protein names: Pgap1 Family Protein

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MIRGFLTRRAEWPAHVPDPDAPPPLMLLWREMGSLARAIGGRIRPLPPEPNPDSDYPPVMVLPGFLSGDWATKALRADLR
RAGFRCYAWGLGFNRGATPDIIERIDGRVQWIIDRTGFAPALVGWSLGGIYAREYAKRHPDKVARVVTLGSPFSGSRRAN
RAWRLYHLIARHPVDNPPIDFHPAPRPEMPTFALWSKHDGVVAVNSARGLPHESDRAVEVDCSHMGFAYAPNSVAAIVRA
LTEEVAPSE

Sequences:

>Translated_249_residues
MIRGFLTRRAEWPAHVPDPDAPPPLMLLWREMGSLARAIGGRIRPLPPEPNPDSDYPPVMVLPGFLSGDWATKALRADLR
RAGFRCYAWGLGFNRGATPDIIERIDGRVQWIIDRTGFAPALVGWSLGGIYAREYAKRHPDKVARVVTLGSPFSGSRRAN
RAWRLYHLIARHPVDNPPIDFHPAPRPEMPTFALWSKHDGVVAVNSARGLPHESDRAVEVDCSHMGFAYAPNSVAAIVRA
LTEEVAPSE
>Mature_249_residues
MIRGFLTRRAEWPAHVPDPDAPPPLMLLWREMGSLARAIGGRIRPLPPEPNPDSDYPPVMVLPGFLSGDWATKALRADLR
RAGFRCYAWGLGFNRGATPDIIERIDGRVQWIIDRTGFAPALVGWSLGGIYAREYAKRHPDKVARVVTLGSPFSGSRRAN
RAWRLYHLIARHPVDNPPIDFHPAPRPEMPTFALWSKHDGVVAVNSARGLPHESDRAVEVDCSHMGFAYAPNSVAAIVRA
LTEEVAPSE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27617; Mature: 27617

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRGFLTRRAEWPAHVPDPDAPPPLMLLWREMGSLARAIGGRIRPLPPEPNPDSDYPPVM
CCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEE
VLPGFLSGDWATKALRADLRRAGFRCYAWGLGFNRGATPDIIERIDGRVQWIIDRTGFAP
EECCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHCCEEEEEEECCCCCH
ALVGWSLGGIYAREYAKRHPDKVARVVTLGSPFSGSRRANRAWRLYHLIARHPVDNPPID
HHHHHHHHHHHHHHHHHHCHHHHEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
FHPAPRPEMPTFALWSKHDGVVAVNSARGLPHESDRAVEVDCSHMGFAYAPNSVAAIVRA
CCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCCCEEEEECCCCCEEECCHHHHHHHHH
LTEEVAPSE
HHHHHCCCC
>Mature Secondary Structure
MIRGFLTRRAEWPAHVPDPDAPPPLMLLWREMGSLARAIGGRIRPLPPEPNPDSDYPPVM
CCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEE
VLPGFLSGDWATKALRADLRRAGFRCYAWGLGFNRGATPDIIERIDGRVQWIIDRTGFAP
EECCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHCCEEEEEEECCCCCH
ALVGWSLGGIYAREYAKRHPDKVARVVTLGSPFSGSRRANRAWRLYHLIARHPVDNPPID
HHHHHHHHHHHHHHHHHHCHHHHEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
FHPAPRPEMPTFALWSKHDGVVAVNSARGLPHESDRAVEVDCSHMGFAYAPNSVAAIVRA
CCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCCCEEEEECCCCCEEECCHHHHHHHHH
LTEEVAPSE
HHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA