| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103485765
Identifier: 103485765
GI number: 103485765
Start: 269295
End: 270797
Strand: Reverse
Name: 103485765
Synonym: Sala_0270
Alternate gene names: NA
Gene position: 270797-269295 (Counterclockwise)
Preceding gene: 103485766
Following gene: 103485761
Centisome position: 8.1
GC content: 64.54
Gene sequence:
>1503_bases ATGAAATCGGGTCTGTCGCTGATCGCGCTGGCGCTTGCCGTCGCGGTTCCTGCCATCGTCCATGCCGAGGACAAGAATGA CAAGGCGAAGGCCGAAAAGCCCGCCGACTACGAACCGCAAATCCGCACCACCAAACTCAGCGGCACCTTTGGCGGCCAGC GGATCAATTACGCCGCGACGATTGGTGAGACGATCATCAGGAACAAGGACGGCGTGCCCGAAGTCGCCGTCGTCACCACA TCCTATGTCAAGGAACCGCGCGACACCAGCCGTCCGGTGACCTTCCTGTTCAACGGCGGCCCCGGTTCGGGCACCGTCTG GTTGATGATGGGCGCGTTCGGGCCGAAGCGCGTTGCGATCCCCGGCACCGGGGTTGATGACGGCGCGCCGCCCTGGCCCA TCGTCGACAATCCCGACGCGCTGCTCGACGTCACCGACATCGTGTTCATCGACCCGCCGGGCACGGGCTTTTCGCACCTG ATCGGCAAGGCCGACCCCAAGGATTATTACGGCGTGACGCAGGATGCGAAGCTGGTCGCCGAAGTGATCCGCCGCTGGCT CGCCGACAATGGCCGCTGGAACAGCCCCAAATATCTCGGCGGCGAAAGCTATGGCACCACCCGCACCGCCGCGGTCGCGC ACCAGCTGATGAACGCGACTTACAATGATGTCGCGTTCAACGGGCTGATCCTGATTTCGACCGTGCTCGATTTTGCGGCG GGCGCCGACACGCCGGGCAACGAGCTGTCGCCGGTCACCAACCTGCCGTCGATGGCGGTCACCGCGCTCTATCACGGCAA GGCGAGCGCGTCGTCGGTCGAGGCTTTTGCAGAGGAAGCGCGGCAATGGGCGATCGGCCCCTATGCGACCGCGCTGCTCA AAGGGCAGAAATTGCAGGGCGAGGAGCGCGCCGCGATCCGCCGCGAGCTTGCGCGCTTCACCGGCCTGTCCGAAACCTGG CTCGAACAGGCGGACCTGCGCGTCACGCCCGCGCGCTTCTACAAGGAGCTGCTGCGCGACCGCGGCCTCACCGTCGGGCG CCTCGACAGCCGCTATACGGGCAAGGATTATGACCACGCCGGCGAAACCCCCGACAACGATCCCAGCTTTTACGGGATCG ACGCCAGCTATACCGCGGCGATCAACAGCTGGCTGCGCGACGGATTGGGGTTCAGGACGGACCGCGAATATCAGTCGATC AGCGGCATCGGCGGGCAATGGGACTGGCGCATCGGCGGGCGCGACACCAACGCCTATCTGAACGTCGCGCCGTACATCGG ACAGGCGATGCGCGAGAACAGCGGGTTGCGCGTGCTCGTCGCGCAGGGCTGGTATGATTTCGCAACGCCCTTTTTCGCCG CCGAATATGCGCTGTCACGCACCGGCATCCCGCAGGATCGCATCACCTTTACCTATTATGACGCAGGCCACATGATGTAC ATCCGCGACGAAGACCGGCGGAAACTGTCGGAGGATGTGCGGGCGTTTATCCGGGCGCGGTAG
Upstream 100 bases:
>100_bases CCTGACCCCTTCGAACAAAACCCCACTGCAACCGACCAGCACCCTTGCCCCCTCCCCGCGCGCGGCTTAGCGTCCGTGCG TCAAACGGGGAGACAAGTGT
Downstream 100 bases:
>100_bases GAAGGCTGCGAACGACCGGAAGCTGCCACAAAGCCCTCTCCCCTTGGGAGAGGGTTGGGTGAGGGTGCCTGAGGTTAGAT TTCAGGGTGGACAGGTGATC
Product: peptidase S10, serine carboxypeptidase
Products: NA
Alternate protein names: Serine Carboxypeptidase Family Protein; Carboxypeptidase-Related Protein; Serine Carboxypeptidase; Carboxypeptidase C; Serine-Type Carboxypeptidase Family Protein; S10 Family Peptidase; Carboxypeptidase; S10 Family Carboxypeptidase; Carboxypeptidase-Like Protein; Serine Carboxypeptidase Superfamily; Peptidase S
Number of amino acids: Translated: 500; Mature: 500
Protein sequence:
>500_residues MKSGLSLIALALAVAVPAIVHAEDKNDKAKAEKPADYEPQIRTTKLSGTFGGQRINYAATIGETIIRNKDGVPEVAVVTT SYVKEPRDTSRPVTFLFNGGPGSGTVWLMMGAFGPKRVAIPGTGVDDGAPPWPIVDNPDALLDVTDIVFIDPPGTGFSHL IGKADPKDYYGVTQDAKLVAEVIRRWLADNGRWNSPKYLGGESYGTTRTAAVAHQLMNATYNDVAFNGLILISTVLDFAA GADTPGNELSPVTNLPSMAVTALYHGKASASSVEAFAEEARQWAIGPYATALLKGQKLQGEERAAIRRELARFTGLSETW LEQADLRVTPARFYKELLRDRGLTVGRLDSRYTGKDYDHAGETPDNDPSFYGIDASYTAAINSWLRDGLGFRTDREYQSI SGIGGQWDWRIGGRDTNAYLNVAPYIGQAMRENSGLRVLVAQGWYDFATPFFAAEYALSRTGIPQDRITFTYYDAGHMMY IRDEDRRKLSEDVRAFIRAR
Sequences:
>Translated_500_residues MKSGLSLIALALAVAVPAIVHAEDKNDKAKAEKPADYEPQIRTTKLSGTFGGQRINYAATIGETIIRNKDGVPEVAVVTT SYVKEPRDTSRPVTFLFNGGPGSGTVWLMMGAFGPKRVAIPGTGVDDGAPPWPIVDNPDALLDVTDIVFIDPPGTGFSHL IGKADPKDYYGVTQDAKLVAEVIRRWLADNGRWNSPKYLGGESYGTTRTAAVAHQLMNATYNDVAFNGLILISTVLDFAA GADTPGNELSPVTNLPSMAVTALYHGKASASSVEAFAEEARQWAIGPYATALLKGQKLQGEERAAIRRELARFTGLSETW LEQADLRVTPARFYKELLRDRGLTVGRLDSRYTGKDYDHAGETPDNDPSFYGIDASYTAAINSWLRDGLGFRTDREYQSI SGIGGQWDWRIGGRDTNAYLNVAPYIGQAMRENSGLRVLVAQGWYDFATPFFAAEYALSRTGIPQDRITFTYYDAGHMMY IRDEDRRKLSEDVRAFIRAR >Mature_500_residues MKSGLSLIALALAVAVPAIVHAEDKNDKAKAEKPADYEPQIRTTKLSGTFGGQRINYAATIGETIIRNKDGVPEVAVVTT SYVKEPRDTSRPVTFLFNGGPGSGTVWLMMGAFGPKRVAIPGTGVDDGAPPWPIVDNPDALLDVTDIVFIDPPGTGFSHL IGKADPKDYYGVTQDAKLVAEVIRRWLADNGRWNSPKYLGGESYGTTRTAAVAHQLMNATYNDVAFNGLILISTVLDFAA GADTPGNELSPVTNLPSMAVTALYHGKASASSVEAFAEEARQWAIGPYATALLKGQKLQGEERAAIRRELARFTGLSETW LEQADLRVTPARFYKELLRDRGLTVGRLDSRYTGKDYDHAGETPDNDPSFYGIDASYTAAINSWLRDGLGFRTDREYQSI SGIGGQWDWRIGGRDTNAYLNVAPYIGQAMRENSGLRVLVAQGWYDFATPFFAAEYALSRTGIPQDRITFTYYDAGHMMY IRDEDRRKLSEDVRAFIRAR
Specific function: Unknown
COG id: COG2939
COG function: function code E; Carboxypeptidase C (cathepsin A)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 54805; Mature: 54805
Theoretical pI: Translated: 5.78; Mature: 5.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSGLSLIALALAVAVPAIVHAEDKNDKAKAEKPADYEPQIRTTKLSGTFGGQRINYAAT CCCCHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEHHH IGETIIRNKDGVPEVAVVTTSYVKEPRDTSRPVTFLFNGGPGSGTVWLMMGAFGPKRVAI HHHHHHCCCCCCCCEEEEEHHHHCCCCCCCCCEEEEEECCCCCCEEEEEEECCCCCEEEC PGTGVDDGAPPWPIVDNPDALLDVTDIVFIDPPGTGFSHLIGKADPKDYYGVTQDAKLVA CCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHCCCCCCHHCCCCCHHHHHH EVIRRWLADNGRWNSPKYLGGESYGTTRTAAVAHQLMNATYNDVAFNGLILISTVLDFAA HHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHCHHHHHHHHHHHHC GADTPGNELSPVTNLPSMAVTALYHGKASASSVEAFAEEARQWAIGPYATALLKGQKLQG CCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCC EERAAIRRELARFTGLSETWLEQADLRVTPARFYKELLRDRGLTVGRLDSRYTGKDYDHA HHHHHHHHHHHHHCCCCHHHHHHCCCEECHHHHHHHHHHHCCCEEECCCCCCCCCCCCCC GETPDNDPSFYGIDASYTAAINSWLRDGLGFRTDREYQSISGIGGQWDWRIGGRDTNAYL CCCCCCCCCEEECCCHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCEEEEEECCCCCCCEE NVAPYIGQAMRENSGLRVLVAQGWYDFATPFFAAEYALSRTGIPQDRITFTYYDAGHMMY EECHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEE IRDEDRRKLSEDVRAFIRAR EECHHHHHHHHHHHHHHHCC >Mature Secondary Structure MKSGLSLIALALAVAVPAIVHAEDKNDKAKAEKPADYEPQIRTTKLSGTFGGQRINYAAT CCCCHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEHHH IGETIIRNKDGVPEVAVVTTSYVKEPRDTSRPVTFLFNGGPGSGTVWLMMGAFGPKRVAI HHHHHHCCCCCCCCEEEEEHHHHCCCCCCCCCEEEEEECCCCCCEEEEEEECCCCCEEEC PGTGVDDGAPPWPIVDNPDALLDVTDIVFIDPPGTGFSHLIGKADPKDYYGVTQDAKLVA CCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHCCCCCCHHCCCCCHHHHHH EVIRRWLADNGRWNSPKYLGGESYGTTRTAAVAHQLMNATYNDVAFNGLILISTVLDFAA HHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHCHHHHHHHHHHHHC GADTPGNELSPVTNLPSMAVTALYHGKASASSVEAFAEEARQWAIGPYATALLKGQKLQG CCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCC EERAAIRRELARFTGLSETWLEQADLRVTPARFYKELLRDRGLTVGRLDSRYTGKDYDHA HHHHHHHHHHHHHCCCCHHHHHHCCCEECHHHHHHHHHHHCCCEEECCCCCCCCCCCCCC GETPDNDPSFYGIDASYTAAINSWLRDGLGFRTDREYQSISGIGGQWDWRIGGRDTNAYL CCCCCCCCCEEECCCHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCEEEEEECCCCCCCEE NVAPYIGQAMRENSGLRVLVAQGWYDFATPFFAAEYALSRTGIPQDRITFTYYDAGHMMY EECHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEE IRDEDRRKLSEDVRAFIRAR EECHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA