Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

Click here to switch to the map view.

The map label for this gene is 103485761

Identifier: 103485761

GI number: 103485761

Start: 266656

End: 267354

Strand: Reverse

Name: 103485761

Synonym: Sala_0266

Alternate gene names: NA

Gene position: 267354-266656 (Counterclockwise)

Preceding gene: 103485765

Following gene: 103485758

Centisome position: 7.99

GC content: 72.82

Gene sequence:

>699_bases
ATGTGCGTCGTCGCCCTTGCCCACCGCGTCCATCCCGACTGGCCGCTCATCCTCATCGGCAATCGTGACGAGTTTCACGC
GCGCCCCGCCGCCCCGCTCCACCAATGGGCGGATGGCAGCGGGATCGTCGCCGGGCGCGACCTTCAGGCGGGCGGGACGT
GGCTGGGCGTCCACGCGCCAAGCGGGCGCGCCGTCGTCGTGACCAATGTGCGCGGCGCGATGCCCGATCCGGCGAAGGAC
TCGCGCGGCGCGCTCGTCACCGACCTGCTGCGTGGACAGGGGCGTTTCGCCGACCCGGCCGTGGCCGACCTCGACCGCTT
CAACGCCTTCAACCTGTTCGCAATCGACGGCAGCGGCCCGCGGCTCCTGACCAACCGGCCGCGGCCGCAGATTTCAAGCC
TCGGGCCCGGCGTCCATGCGCTCGCGAACGAGCCCGTCGACCGCCCCTGCCCGCGCGCCGAGCGGCTGCGCGCCACGCTG
GCGGCGCTCGTCGGGTCGCGCAGCGACCCTGAGGGTCTGCTCGACACGCTGACGGCGGAAGGCGACCCGGCGCTGTTCCT
GACGGGCGAAGTCTATGGCACGCGCGCCTCGACCCTCGCCGCGGTGGCGGCGGACGGTACCGTCAGGATGGTCGAGCGCC
GATACGAAGCGGGCGGCCGCCCCGGTGGAACGACCGCCCTAGATTTTCGGATTGGCTGA

Upstream 100 bases:

>100_bases
CATGATGTCCTCCCGCCGATAGCGATGTTGATTGAACATTCAACCAAGGAACTTGTCAAGAGGCTTGGCAAGGCCGCCGA
ACGCCCCGATATGGGCGCGC

Downstream 100 bases:

>100_bases
GATAATCTCGTCGCCCCAGCGAAGGCGGGGCAGCTGGCAGCCTTTTCCCGCGGTGCTGCATAAACCGATGGCGGCCCCCC
GCCTTCGCGGCGGCGACGGT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MCVVALAHRVHPDWPLILIGNRDEFHARPAAPLHQWADGSGIVAGRDLQAGGTWLGVHAPSGRAVVVTNVRGAMPDPAKD
SRGALVTDLLRGQGRFADPAVADLDRFNAFNLFAIDGSGPRLLTNRPRPQISSLGPGVHALANEPVDRPCPRAERLRATL
AALVGSRSDPEGLLDTLTAEGDPALFLTGEVYGTRASTLAAVAADGTVRMVERRYEAGGRPGGTTALDFRIG

Sequences:

>Translated_232_residues
MCVVALAHRVHPDWPLILIGNRDEFHARPAAPLHQWADGSGIVAGRDLQAGGTWLGVHAPSGRAVVVTNVRGAMPDPAKD
SRGALVTDLLRGQGRFADPAVADLDRFNAFNLFAIDGSGPRLLTNRPRPQISSLGPGVHALANEPVDRPCPRAERLRATL
AALVGSRSDPEGLLDTLTAEGDPALFLTGEVYGTRASTLAAVAADGTVRMVERRYEAGGRPGGTTALDFRIG
>Mature_232_residues
MCVVALAHRVHPDWPLILIGNRDEFHARPAAPLHQWADGSGIVAGRDLQAGGTWLGVHAPSGRAVVVTNVRGAMPDPAKD
SRGALVTDLLRGQGRFADPAVADLDRFNAFNLFAIDGSGPRLLTNRPRPQISSLGPGVHALANEPVDRPCPRAERLRATL
AALVGSRSDPEGLLDTLTAEGDPALFLTGEVYGTRASTLAAVAADGTVRMVERRYEAGGRPGGTTALDFRIG

Specific function: Unknown

COG id: COG3332

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI190570176, Length=256, Percent_Identity=28.90625, Blast_Score=76, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24444; Mature: 24444

Theoretical pI: Translated: 7.68; Mature: 7.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCVVALAHRVHPDWPLILIGNRDEFHARPAAPLHQWADGSGIVAGRDLQAGGTWLGVHAP
CEEEEEEHHCCCCCCEEEEECCCCCCCCCCCCHHHCCCCCCEEECCEECCCCEEEEEECC
SGRAVVVTNVRGAMPDPAKDSRGALVTDLLRGQGRFADPAVADLDRFNAFNLFAIDGSGP
CCCEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHCCCEEEEEECCCCC
RLLTNRPRPQISSLGPGVHALANEPVDRPCPRAERLRATLAALVGSRSDPEGLLDTLTAE
EEECCCCCCCHHHCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCC
GDPALFLTGEVYGTRASTLAAVAADGTVRMVERRYEAGGRPGGTTALDFRIG
CCCEEEEECCCCCCCHHHEEEECCCCHHHHHHHHHHCCCCCCCCEEEEEEEC
>Mature Secondary Structure
MCVVALAHRVHPDWPLILIGNRDEFHARPAAPLHQWADGSGIVAGRDLQAGGTWLGVHAP
CEEEEEEHHCCCCCCEEEEECCCCCCCCCCCCHHHCCCCCCEEECCEECCCCEEEEEECC
SGRAVVVTNVRGAMPDPAKDSRGALVTDLLRGQGRFADPAVADLDRFNAFNLFAIDGSGP
CCCEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHCCCEEEEEECCCCC
RLLTNRPRPQISSLGPGVHALANEPVDRPCPRAERLRATLAALVGSRSDPEGLLDTLTAE
EEECCCCCCCHHHCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCC
GDPALFLTGEVYGTRASTLAAVAADGTVRMVERRYEAGGRPGGTTALDFRIG
CCCEEEEECCCCCCCHHHEEEECCCCHHHHHHHHHHCCCCCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA