| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103485761
Identifier: 103485761
GI number: 103485761
Start: 266656
End: 267354
Strand: Reverse
Name: 103485761
Synonym: Sala_0266
Alternate gene names: NA
Gene position: 267354-266656 (Counterclockwise)
Preceding gene: 103485765
Following gene: 103485758
Centisome position: 7.99
GC content: 72.82
Gene sequence:
>699_bases ATGTGCGTCGTCGCCCTTGCCCACCGCGTCCATCCCGACTGGCCGCTCATCCTCATCGGCAATCGTGACGAGTTTCACGC GCGCCCCGCCGCCCCGCTCCACCAATGGGCGGATGGCAGCGGGATCGTCGCCGGGCGCGACCTTCAGGCGGGCGGGACGT GGCTGGGCGTCCACGCGCCAAGCGGGCGCGCCGTCGTCGTGACCAATGTGCGCGGCGCGATGCCCGATCCGGCGAAGGAC TCGCGCGGCGCGCTCGTCACCGACCTGCTGCGTGGACAGGGGCGTTTCGCCGACCCGGCCGTGGCCGACCTCGACCGCTT CAACGCCTTCAACCTGTTCGCAATCGACGGCAGCGGCCCGCGGCTCCTGACCAACCGGCCGCGGCCGCAGATTTCAAGCC TCGGGCCCGGCGTCCATGCGCTCGCGAACGAGCCCGTCGACCGCCCCTGCCCGCGCGCCGAGCGGCTGCGCGCCACGCTG GCGGCGCTCGTCGGGTCGCGCAGCGACCCTGAGGGTCTGCTCGACACGCTGACGGCGGAAGGCGACCCGGCGCTGTTCCT GACGGGCGAAGTCTATGGCACGCGCGCCTCGACCCTCGCCGCGGTGGCGGCGGACGGTACCGTCAGGATGGTCGAGCGCC GATACGAAGCGGGCGGCCGCCCCGGTGGAACGACCGCCCTAGATTTTCGGATTGGCTGA
Upstream 100 bases:
>100_bases CATGATGTCCTCCCGCCGATAGCGATGTTGATTGAACATTCAACCAAGGAACTTGTCAAGAGGCTTGGCAAGGCCGCCGA ACGCCCCGATATGGGCGCGC
Downstream 100 bases:
>100_bases GATAATCTCGTCGCCCCAGCGAAGGCGGGGCAGCTGGCAGCCTTTTCCCGCGGTGCTGCATAAACCGATGGCGGCCCCCC GCCTTCGCGGCGGCGACGGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 232; Mature: 232
Protein sequence:
>232_residues MCVVALAHRVHPDWPLILIGNRDEFHARPAAPLHQWADGSGIVAGRDLQAGGTWLGVHAPSGRAVVVTNVRGAMPDPAKD SRGALVTDLLRGQGRFADPAVADLDRFNAFNLFAIDGSGPRLLTNRPRPQISSLGPGVHALANEPVDRPCPRAERLRATL AALVGSRSDPEGLLDTLTAEGDPALFLTGEVYGTRASTLAAVAADGTVRMVERRYEAGGRPGGTTALDFRIG
Sequences:
>Translated_232_residues MCVVALAHRVHPDWPLILIGNRDEFHARPAAPLHQWADGSGIVAGRDLQAGGTWLGVHAPSGRAVVVTNVRGAMPDPAKD SRGALVTDLLRGQGRFADPAVADLDRFNAFNLFAIDGSGPRLLTNRPRPQISSLGPGVHALANEPVDRPCPRAERLRATL AALVGSRSDPEGLLDTLTAEGDPALFLTGEVYGTRASTLAAVAADGTVRMVERRYEAGGRPGGTTALDFRIG >Mature_232_residues MCVVALAHRVHPDWPLILIGNRDEFHARPAAPLHQWADGSGIVAGRDLQAGGTWLGVHAPSGRAVVVTNVRGAMPDPAKD SRGALVTDLLRGQGRFADPAVADLDRFNAFNLFAIDGSGPRLLTNRPRPQISSLGPGVHALANEPVDRPCPRAERLRATL AALVGSRSDPEGLLDTLTAEGDPALFLTGEVYGTRASTLAAVAADGTVRMVERRYEAGGRPGGTTALDFRIG
Specific function: Unknown
COG id: COG3332
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI190570176, Length=256, Percent_Identity=28.90625, Blast_Score=76, Evalue=2e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24444; Mature: 24444
Theoretical pI: Translated: 7.68; Mature: 7.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MCVVALAHRVHPDWPLILIGNRDEFHARPAAPLHQWADGSGIVAGRDLQAGGTWLGVHAP CEEEEEEHHCCCCCCEEEEECCCCCCCCCCCCHHHCCCCCCEEECCEECCCCEEEEEECC SGRAVVVTNVRGAMPDPAKDSRGALVTDLLRGQGRFADPAVADLDRFNAFNLFAIDGSGP CCCEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHCCCEEEEEECCCCC RLLTNRPRPQISSLGPGVHALANEPVDRPCPRAERLRATLAALVGSRSDPEGLLDTLTAE EEECCCCCCCHHHCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCC GDPALFLTGEVYGTRASTLAAVAADGTVRMVERRYEAGGRPGGTTALDFRIG CCCEEEEECCCCCCCHHHEEEECCCCHHHHHHHHHHCCCCCCCCEEEEEEEC >Mature Secondary Structure MCVVALAHRVHPDWPLILIGNRDEFHARPAAPLHQWADGSGIVAGRDLQAGGTWLGVHAP CEEEEEEHHCCCCCCEEEEECCCCCCCCCCCCHHHCCCCCCEEECCEECCCCEEEEEECC SGRAVVVTNVRGAMPDPAKDSRGALVTDLLRGQGRFADPAVADLDRFNAFNLFAIDGSGP CCCEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHCCCEEEEEECCCCC RLLTNRPRPQISSLGPGVHALANEPVDRPCPRAERLRATLAALVGSRSDPEGLLDTLTAE EEECCCCCCCHHHCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCC GDPALFLTGEVYGTRASTLAAVAADGTVRMVERRYEAGGRPGGTTALDFRIG CCCEEEEECCCCCCCHHHEEEECCCCHHHHHHHHHHCCCCCCCCEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA