| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is 103485691
Identifier: 103485691
GI number: 103485691
Start: 209034
End: 210590
Strand: Direct
Name: 103485691
Synonym: Sala_0195
Alternate gene names: NA
Gene position: 209034-210590 (Clockwise)
Preceding gene: 103485690
Following gene: 103485692
Centisome position: 6.25
GC content: 64.42
Gene sequence:
>1557_bases ATGCTCAAACAGCTCAGCGCGCAGGACGCCCAGTTCCTCTACACCCAGACCGCGAACAACCTCACGCACATCATGGGCGT CTATATCTATGATCCGTCGACCGCGCCGGGGGGCTTCGTGCGCTTCAAGGACATCATCGCCCATGTCGAAAGCCGCGTCG ATACCTCGCCCCTGTTCAAGCGCCGCCTCCACCGCCTGCCGTTCGACATCGATCATCCCTATTGGGTCGAGGACGAGCAT TTCGACGTCGAGGCCCACATGAGCCACGCGCGCCTGCCCGAACCGGGCGACTGGCGGCAATTCTGCATCGCGGTGGCGCG CTGGTTCTCGAAGCCCATGGACATGAACCGCCCGCTCTGGGACATTTATGTGATCGAAGGGCTCGACCGCATCCCCGGTA TTCCCAAGGGCAGCTTCGCGATGCTCCATCGCGTCCATCACGCCGCGGTCGACGGCGCTTCGGGCGCGCACGCCTTCATC GCGATGAGCGATATCGACGCGAACGGCACGCCGGCGATCGCCGAACCGCCGCCGGTCGAGGATCTGGGCGATCCGCCGTC GAGCGCCGAAATCCTTTCGCGCGCCTGGTCGGCGTCGATGCAATCGCCGGTAAAGTTCATGAACGCGCTGATGAAAATCT CGCCGGCGATCGTCGCTTCGGCGCGCAGGTCGATCGCCGAGGGCGGGATGACCGCCGGGGTGCCCGAGACGCGCTTCAAC GTCCCTGTCGGCCCGCACAAGATGTTCGACGGGACGACCGTGGCGCTCGCCGACGTCGCAGAGATCCGCAGAAAGGTTCC GGGCGCGACGGTCAACGACGTCGTGCTCACGACGGTCGGCGGCGCGCTGCGCAAATATCTGGCGAAGCATAAGGAATTGC CGAAGGAAAGCCTCGTCGCGGTCGCGCCGGTCAATCTGCGCGGCAAGGGCGGAAAGGCGTCGACGCCGGGCAATCAGGTG TCGGCGATGAGCGTGCCGATCCGCACCGACATCGCCGATCCGCTCGAACGGCTCGCCGCGGTGCGCGACTATACGGTCGA GGCCAAGGAGGCCAAAGCCGGCGTGAGCGCGCGGATCATGACCGACCTGTCACAGCATATCCCCGGCGCCACGATGGCGG CGGTCGCGCGGCTCGTCACCAGCGAGCGCTTTGCGGTGCGCGGCACCAATCTCTTCATCTCGAACGTCCCCGGCGCGCAG GTGCCGCTCTACCTCGCGGGCGCCAGGCTGGTGCAGCAGCACGGCATGGCGCCGCTCGCGAACAATATGGGGCTGTTCAT AGCGACCCCCAGCTACAATGGCCGCATCGCCTTCTCGATCATTTCGGAACGTGCGATCATGCCCGACATCGCTTTCTTTC GAACATGTATCGACGAAAGTTTCGCCGATTTGATGGCGGCGGATCCGAAACCTGAAAAGCCAAAAGCCGCTACGGCAAAG CCGAAAGCGGCGGCAAAGCCCAAAGCGAAAGCGACGGCCAAAGCGGACAGGAAAAACACCTCTTCGTCATCCCGGCGAAG GCCGGGATCTCGCCCTCGCGTTAAATCTCCACGGTGA
Upstream 100 bases:
>100_bases GATGGGGGCGGGGGAATGAATATCGCGTATCGCTCCCGCCATTCCGGCGACGGCCGGATCGTCCCCCGCTGGGGGAGGAT TTTCAAGTCAGGAACCTAAC
Downstream 100 bases:
>100_bases GATCCCGGCCTTCGCCGGGATGACGAGTGTATGGCAAGCATCGTCAAAACAGTTGCCAAAGACAACGTAAGCCCGCAAGA ATCGAGAAAAACATACCATG
Product: hypothetical protein
Products: NA
Alternate protein names: Putative triacylglycerol synthase Rv1425/MT1468 [H]
Number of amino acids: Translated: 518; Mature: 518
Protein sequence:
>518_residues MLKQLSAQDAQFLYTQTANNLTHIMGVYIYDPSTAPGGFVRFKDIIAHVESRVDTSPLFKRRLHRLPFDIDHPYWVEDEH FDVEAHMSHARLPEPGDWRQFCIAVARWFSKPMDMNRPLWDIYVIEGLDRIPGIPKGSFAMLHRVHHAAVDGASGAHAFI AMSDIDANGTPAIAEPPPVEDLGDPPSSAEILSRAWSASMQSPVKFMNALMKISPAIVASARRSIAEGGMTAGVPETRFN VPVGPHKMFDGTTVALADVAEIRRKVPGATVNDVVLTTVGGALRKYLAKHKELPKESLVAVAPVNLRGKGGKASTPGNQV SAMSVPIRTDIADPLERLAAVRDYTVEAKEAKAGVSARIMTDLSQHIPGATMAAVARLVTSERFAVRGTNLFISNVPGAQ VPLYLAGARLVQQHGMAPLANNMGLFIATPSYNGRIAFSIISERAIMPDIAFFRTCIDESFADLMAADPKPEKPKAATAK PKAAAKPKAKATAKADRKNTSSSSRRRPGSRPRVKSPR
Sequences:
>Translated_518_residues MLKQLSAQDAQFLYTQTANNLTHIMGVYIYDPSTAPGGFVRFKDIIAHVESRVDTSPLFKRRLHRLPFDIDHPYWVEDEH FDVEAHMSHARLPEPGDWRQFCIAVARWFSKPMDMNRPLWDIYVIEGLDRIPGIPKGSFAMLHRVHHAAVDGASGAHAFI AMSDIDANGTPAIAEPPPVEDLGDPPSSAEILSRAWSASMQSPVKFMNALMKISPAIVASARRSIAEGGMTAGVPETRFN VPVGPHKMFDGTTVALADVAEIRRKVPGATVNDVVLTTVGGALRKYLAKHKELPKESLVAVAPVNLRGKGGKASTPGNQV SAMSVPIRTDIADPLERLAAVRDYTVEAKEAKAGVSARIMTDLSQHIPGATMAAVARLVTSERFAVRGTNLFISNVPGAQ VPLYLAGARLVQQHGMAPLANNMGLFIATPSYNGRIAFSIISERAIMPDIAFFRTCIDESFADLMAADPKPEKPKAATAK PKAAAKPKAKATAKADRKNTSSSSRRRPGSRPRVKSPR >Mature_518_residues MLKQLSAQDAQFLYTQTANNLTHIMGVYIYDPSTAPGGFVRFKDIIAHVESRVDTSPLFKRRLHRLPFDIDHPYWVEDEH FDVEAHMSHARLPEPGDWRQFCIAVARWFSKPMDMNRPLWDIYVIEGLDRIPGIPKGSFAMLHRVHHAAVDGASGAHAFI AMSDIDANGTPAIAEPPPVEDLGDPPSSAEILSRAWSASMQSPVKFMNALMKISPAIVASARRSIAEGGMTAGVPETRFN VPVGPHKMFDGTTVALADVAEIRRKVPGATVNDVVLTTVGGALRKYLAKHKELPKESLVAVAPVNLRGKGGKASTPGNQV SAMSVPIRTDIADPLERLAAVRDYTVEAKEAKAGVSARIMTDLSQHIPGATMAAVARLVTSERFAVRGTNLFISNVPGAQ VPLYLAGARLVQQHGMAPLANNMGLFIATPSYNGRIAFSIISERAIMPDIAFFRTCIDESFADLMAADPKPEKPKAATAK PKAAAKPKAKATAKADRKNTSSSSRRRPGSRPRVKSPR
Specific function: Upon expression in E.coli functions very weakly as a triacylglycerol synthase, making triacylglycerol (TG) from diolein and long-chain fatty acyl-CoA. Has no wax synthase activity [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the long-chain O-acyltransferase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014292 - InterPro: IPR004255 [H]
Pfam domain/function: PF03007 UPF0089 [H]
EC number: =2.3.1.20 [H]
Molecular weight: Translated: 56123; Mature: 56123
Theoretical pI: Translated: 10.28; Mature: 10.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKQLSAQDAQFLYTQTANNLTHIMGVYIYDPSTAPGGFVRFKDIIAHVESRVDTSPLFK CCCCCCCCCHHEEEHHHHCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHH RRLHRLPFDIDHPYWVEDEHFDVEAHMSHARLPEPGDWRQFCIAVARWFSKPMDMNRPLW HHHHHCCCCCCCCEECCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEE DIYVIEGLDRIPGIPKGSFAMLHRVHHAAVDGASGAHAFIAMSDIDANGTPAIAEPPPVE EEEEECCHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCH DLGDPPSSAEILSRAWSASMQSPVKFMNALMKISPAIVASARRSIAEGGMTAGVPETRFN HCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC VPVGPHKMFDGTTVALADVAEIRRKVPGATVNDVVLTTVGGALRKYLAKHKELPKESLVA CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHEEE VAPVNLRGKGGKASTPGNQVSAMSVPIRTDIADPLERLAAVRDYTVEAKEAKAGVSARIM EECEEECCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHH TDLSQHIPGATMAAVARLVTSERFAVRGTNLFISNVPGAQVPLYLAGARLVQQHGMAPLA HHHHHHCCCHHHHHHHHHHHCCCEEEECCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCC NNMGLFIATPSYNGRIAFSIISERAIMPDIAFFRTCIDESFADLMAADPKPEKPKAATAK CCCEEEEECCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC PKAAAKPKAKATAKADRKNTSSSSRRRPGSRPRVKSPR CCCCCCCCHHHHHHHHCCCCCCHHHCCCCCCCCCCCCC >Mature Secondary Structure MLKQLSAQDAQFLYTQTANNLTHIMGVYIYDPSTAPGGFVRFKDIIAHVESRVDTSPLFK CCCCCCCCCHHEEEHHHHCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHH RRLHRLPFDIDHPYWVEDEHFDVEAHMSHARLPEPGDWRQFCIAVARWFSKPMDMNRPLW HHHHHCCCCCCCCEECCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEE DIYVIEGLDRIPGIPKGSFAMLHRVHHAAVDGASGAHAFIAMSDIDANGTPAIAEPPPVE EEEEECCHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCH DLGDPPSSAEILSRAWSASMQSPVKFMNALMKISPAIVASARRSIAEGGMTAGVPETRFN HCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC VPVGPHKMFDGTTVALADVAEIRRKVPGATVNDVVLTTVGGALRKYLAKHKELPKESLVA CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHEEE VAPVNLRGKGGKASTPGNQVSAMSVPIRTDIADPLERLAAVRDYTVEAKEAKAGVSARIM EECEEECCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHH TDLSQHIPGATMAAVARLVTSERFAVRGTNLFISNVPGAQVPLYLAGARLVQQHGMAPLA HHHHHHCCCHHHHHHHHHHHCCCEEEECCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCC NNMGLFIATPSYNGRIAFSIISERAIMPDIAFFRTCIDESFADLMAADPKPEKPKAATAK CCCEEEEECCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC PKAAAKPKAKATAKADRKNTSSSSRRRPGSRPRVKSPR CCCCCCCCHHHHHHHHCCCCCCHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]