| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103485692
Identifier: 103485692
GI number: 103485692
Start: 210709
End: 212157
Strand: Direct
Name: 103485692
Synonym: Sala_0196
Alternate gene names: NA
Gene position: 210709-212157 (Clockwise)
Preceding gene: 103485691
Following gene: 103485693
Centisome position: 6.3
GC content: 65.29
Gene sequence:
>1449_bases ATGCTCTTCACCCCGACGCTCAGCGCCGACCGCGATCTCGCGACCGCGCCCGACTATGCCGCCTGGAGCAAGGCGGCGCG CGAGCATGACAGGAAATCGGGGATGCAGGCGTGGCGCGATGCCGACGAGAGCAAGCATTTCGATTATAAGGCCATTCGGG CAAGGCTCGAAAAGCTGCGCAAGCTGTCGGCGGCGGGCGACGTCAAGGGGCTGCTCTTCGTGCTCAACGAGGGCATCCAC GGCAATATCGACGGCATGGGGCACGAGCGGCTGTATCAGAAGGCGCGTTTCGGGACGAAAAAGCTCGTCGAAGCCTATAT CGCGGAGGTCGTCGCCTCGCTCGACAAGATCGCCGCCGCGCGCAGCATCGGTCGTGAGGAAAAGCGCGACTTCTTTCGCC GCGCCCAGCATTGTTACGGCCGCTCGGCGCTATTGCTGTCGGGATCGGGCAGCTTCCTCTTCTTCCACATCGGCGTCGTC AAGGCGCTCTGGTCCGAAGGCGTGCTGCCGTCGATCATGTCGGGCGCGAGTGGCGGGTCGATCGTCGCCGCGGTCGTCTG CACGCGCAAGGACGCCGACATCGGCGCCTTTCTCGAAAGCGAGCGCCTCGCCAACCCCGATCGCGCGCCCGACGGACGGC GCCTCGCCTCGGACGCGGTGCGCGAACGGCTCGCGGGCCTGATCCCCGACCTGACCTTTCAGGAGGCCTATGAGATCAGC GGGCGTCACCTCAACGTCTCGGTCGCGCCCGCCGAAAAGCATCAGAACGGGCGGCTCCTGAACGCGATCACCGCGCCCAA TGTGCTGATCCGCGAGGCCGTGCTCGCGTCATGTGCGGTCCCCGGCGTCTTTCCGCCCGTCATGCTGATGGCACGCGACG ACGATGGCGCGCGCATCGCCTATCAGCCCGATCGTCGCTGGGTCGACGGGTCGGTGACGCACGACATCCCGACCAGGCGC CTCGAACGCCTTTATGGCGTCAACCACCATATCGTCAGCCAGGCGAACCCGATCGCGCTGCCCTTCGCGACCGACACGCG CAAGCAGATGGCGCCGATCGAGGCGATCCAGCATGCCTCGATGACCACCTTCAAGGCGTGGCTCAACGCGAACATGGTGA TTTTCCAGAAACCGCTCGAGCTGATTCCGCCCTTGAACAGCCTCGCCAACATGGCGCGGTCGGTGATCAACCAGGAATAT ACCGGCGACATCAACATCATCCGCCCGCCCAAATTCTGGTCGCCCGCGAAGATCCTCTCCGATCTGGGGCAGGATGATAT CGACGAACTGGTCGACACCGGCATGCGCACCGCCTGGCCCAAGATCGAAATGGTCCGCACCCAGACCGCGATCAGCCGCG CGCTCGAAGCGATCCTTGCGAAGATCGACAAGGCGGGCGACGACGGCCCCGGCCACCGCAGCGCCGCGCTCAAGAAAGCG GTGCGGTGA
Upstream 100 bases:
>100_bases GATGACGAGTGTATGGCAAGCATCGTCAAAACAGTTGCCAAAGACAACGTAAGCCCGCAAGAATCGAGAAAAACATACCA TGCTCTCGCAGGATTACCGA
Downstream 100 bases:
>100_bases GCGCCGACAACGAACCGCTGACGCTGCCGGCCTGGCAGGGCGGCGACGGGTCGAACCTCAATGTCACCCGCTGGTTGCCG CAGGGCGATCCGAAGGCGGT
Product: patatin
Products: NA
Alternate protein names: Alpha-Beta Hydrolase Family Esterase; Patatin Family Phospholipase; Phospholipase Patatin Family; Patatin Family Protein; Esterase Of Alpha-Beta Hydrolase Superfamily Protein
Number of amino acids: Translated: 482; Mature: 482
Protein sequence:
>482_residues MLFTPTLSADRDLATAPDYAAWSKAAREHDRKSGMQAWRDADESKHFDYKAIRARLEKLRKLSAAGDVKGLLFVLNEGIH GNIDGMGHERLYQKARFGTKKLVEAYIAEVVASLDKIAAARSIGREEKRDFFRRAQHCYGRSALLLSGSGSFLFFHIGVV KALWSEGVLPSIMSGASGGSIVAAVVCTRKDADIGAFLESERLANPDRAPDGRRLASDAVRERLAGLIPDLTFQEAYEIS GRHLNVSVAPAEKHQNGRLLNAITAPNVLIREAVLASCAVPGVFPPVMLMARDDDGARIAYQPDRRWVDGSVTHDIPTRR LERLYGVNHHIVSQANPIALPFATDTRKQMAPIEAIQHASMTTFKAWLNANMVIFQKPLELIPPLNSLANMARSVINQEY TGDINIIRPPKFWSPAKILSDLGQDDIDELVDTGMRTAWPKIEMVRTQTAISRALEAILAKIDKAGDDGPGHRSAALKKA VR
Sequences:
>Translated_482_residues MLFTPTLSADRDLATAPDYAAWSKAAREHDRKSGMQAWRDADESKHFDYKAIRARLEKLRKLSAAGDVKGLLFVLNEGIH GNIDGMGHERLYQKARFGTKKLVEAYIAEVVASLDKIAAARSIGREEKRDFFRRAQHCYGRSALLLSGSGSFLFFHIGVV KALWSEGVLPSIMSGASGGSIVAAVVCTRKDADIGAFLESERLANPDRAPDGRRLASDAVRERLAGLIPDLTFQEAYEIS GRHLNVSVAPAEKHQNGRLLNAITAPNVLIREAVLASCAVPGVFPPVMLMARDDDGARIAYQPDRRWVDGSVTHDIPTRR LERLYGVNHHIVSQANPIALPFATDTRKQMAPIEAIQHASMTTFKAWLNANMVIFQKPLELIPPLNSLANMARSVINQEY TGDINIIRPPKFWSPAKILSDLGQDDIDELVDTGMRTAWPKIEMVRTQTAISRALEAILAKIDKAGDDGPGHRSAALKKA VR >Mature_482_residues MLFTPTLSADRDLATAPDYAAWSKAAREHDRKSGMQAWRDADESKHFDYKAIRARLEKLRKLSAAGDVKGLLFVLNEGIH GNIDGMGHERLYQKARFGTKKLVEAYIAEVVASLDKIAAARSIGREEKRDFFRRAQHCYGRSALLLSGSGSFLFFHIGVV KALWSEGVLPSIMSGASGGSIVAAVVCTRKDADIGAFLESERLANPDRAPDGRRLASDAVRERLAGLIPDLTFQEAYEIS GRHLNVSVAPAEKHQNGRLLNAITAPNVLIREAVLASCAVPGVFPPVMLMARDDDGARIAYQPDRRWVDGSVTHDIPTRR LERLYGVNHHIVSQANPIALPFATDTRKQMAPIEAIQHASMTTFKAWLNANMVIFQKPLELIPPLNSLANMARSVINQEY TGDINIIRPPKFWSPAKILSDLGQDDIDELVDTGMRTAWPKIEMVRTQTAISRALEAILAKIDKAGDDGPGHRSAALKKA VR
Specific function: Unknown
COG id: COG1752
COG function: function code R; Predicted esterase of the alpha-beta hydrolase superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Saccharomyces cerevisiae, GI6324655, Length=479, Percent_Identity=27.348643006263, Blast_Score=203, Evalue=4e-53, Organism=Saccharomyces cerevisiae, GI6322942, Length=479, Percent_Identity=28.6012526096033, Blast_Score=199, Evalue=1e-51, Organism=Saccharomyces cerevisiae, GI6323973, Length=385, Percent_Identity=24.4155844155844, Blast_Score=126, Evalue=7e-30,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 53051; Mature: 53051
Theoretical pI: Translated: 9.68; Mature: 9.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLFTPTLSADRDLATAPDYAAWSKAAREHDRKSGMQAWRDADESKHFDYKAIRARLEKLR CEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH KLSAAGDVKGLLFVLNEGIHGNIDGMGHERLYQKARFGTKKLVEAYIAEVVASLDKIAAA HHHHCCCHHHHHHEECCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH RSIGREEKRDFFRRAQHCYGRSALLLSGSGSFLFFHIGVVKALWSEGVLPSIMSGASGGS HHCCHHHHHHHHHHHHHHCCCCEEEEECCCCEEEHHHHHHHHHHHCCCCHHHHCCCCCCC IVAAVVCTRKDADIGAFLESERLANPDRAPDGRRLASDAVRERLAGLIPDLTFQEAYEIS EEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCC GRHLNVSVAPAEKHQNGRLLNAITAPNVLIREAVLASCAVPGVFPPVMLMARDDDGARIA CCEEEEEECCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEE YQPDRRWVDGSVTHDIPTRRLERLYGVNHHIVSQANPIALPFATDTRKQMAPIEAIQHAS ECCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHH MTTFKAWLNANMVIFQKPLELIPPLNSLANMARSVINQEYTGDINIIRPPKFWSPAKILS HHHHHHHHCCCEEEEECCHHHCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHH DLGQDDIDELVDTGMRTAWPKIEMVRTQTAISRALEAILAKIDKAGDDGPGHRSAALKKA HCCCCHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH VR CC >Mature Secondary Structure MLFTPTLSADRDLATAPDYAAWSKAAREHDRKSGMQAWRDADESKHFDYKAIRARLEKLR CEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH KLSAAGDVKGLLFVLNEGIHGNIDGMGHERLYQKARFGTKKLVEAYIAEVVASLDKIAAA HHHHCCCHHHHHHEECCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH RSIGREEKRDFFRRAQHCYGRSALLLSGSGSFLFFHIGVVKALWSEGVLPSIMSGASGGS HHCCHHHHHHHHHHHHHHCCCCEEEEECCCCEEEHHHHHHHHHHHCCCCHHHHCCCCCCC IVAAVVCTRKDADIGAFLESERLANPDRAPDGRRLASDAVRERLAGLIPDLTFQEAYEIS EEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCC GRHLNVSVAPAEKHQNGRLLNAITAPNVLIREAVLASCAVPGVFPPVMLMARDDDGARIA CCEEEEEECCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEE YQPDRRWVDGSVTHDIPTRRLERLYGVNHHIVSQANPIALPFATDTRKQMAPIEAIQHAS ECCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHH MTTFKAWLNANMVIFQKPLELIPPLNSLANMARSVINQEYTGDINIIRPPKFWSPAKILS HHHHHHHHCCCEEEEECCHHHCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHH DLGQDDIDELVDTGMRTAWPKIEMVRTQTAISRALEAILAKIDKAGDDGPGHRSAALKKA HCCCCHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH VR CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA