| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is divL [H]
Identifier: 103485658
GI number: 103485658
Start: 161199
End: 163562
Strand: Reverse
Name: divL [H]
Synonym: Sala_0162
Alternate gene names: 103485658
Gene position: 163562-161199 (Counterclockwise)
Preceding gene: 103485659
Following gene: 103485657
Centisome position: 4.89
GC content: 71.07
Gene sequence:
>2364_bases ATGAGCGGCACGCTTTCCCCGACCCTGCTGTTCGCCCTTGGCCTGTTCGCGGCGCTATGGTTGCTCGCCGGCCTGTGGGC GACCTTGCGCGGGATTGCGATGCAGCGGCGCGCAGCTTTCGCGGGCGGCCAGGCCGAACGGCTTGCGAGCCTCGTCGAAG CGTCGCCGCAACTCCCCGTGATCGTCCGCGCCGACTGGCGGATCGAAGCCAGCGACCGGCTCGGTCGCTGGCTGGGGCTC GACCGCGGACCGCGCAATTTCGACGAACTGCGCGGGATCGGCAGCGGGCTCGACGCCGCGAGTCACGACCTGCTGCGCCA GGCGATTCTCGGCGCGCAGCGCGGCGCCAAGCCATTCCAGCTGAGCCTCAAGCCCGAAGGGAGCCATCGCACCATCATCG TCCAGGGCGCCGCGGCGCCGCAGGCGGTCGGCGGGGCGGGCAGCGTCCTCCTGTGGCTCAGCGACGCGACCGAGGGACAA CAGGCGCTCGCCCATGCCCGCGCCGAGCGCGACGAGGCGCTGGCCGCCTTCGAGGCCTTGTCGGGGCTCATCGAGGCGGC GCCCTTCCCCATGTGGTTCCGGGACACCGACTTGCAGCTCGCGCTCGTCAACGCCGCCTATGTCCGCGCGGTCGAGGCCA GGAGCGCCACCGCGGTGATCGACGGCGGCATCGAGCTTTGCGAAACCGTCGCGGGAGTGAGCGCCGCCGACGCCGCCGAC GCCGCGCGCGCGGCGGGATCGGCGCAGCAGCGCACCATCCCGGTGACGATCGAGGGCGAGCGGCGGATCATGCGCGTCGT CGATGTGCCGCTCGCGCCCGAGGGCGGCCGCATGATCGGCATCGCGGGCTATGCGATCGACATTCAGGAACTGGAAAGCG AACGCGGCGCGCATCGCCGCTTCGTCGATACGCAACGCGAGCTGCTCGACCGGCTGTCGGCCGCGGTCGCGCAATTCGGC CCCGACCAGGGCCTCGCCTTTGCCAACCTGCCTTTTCGCCGCCTGTTCGGGCTGGATGCGGACGATGTGGGGGAGGCGCG GCCGTTCGCCCGGCTGCTCGATGCATGGCGCGAGCGCGGCCGGACGCCGGAGGTACGCGACTATCCCGAATGGCGGCAAG CGCATGTCGACTGGTTTGCGCGAGCCGAAGCAAGCGAAGAGGATTGGCGCCTGCGCGACGGCACGCACCTGCACGTCGTC GCGCAGCCGACCCCCGACGGTGGGCTGTTGCTGATCGCCGAGGACAAGACCGAGCAGGTCCAGCTCGCCGGGGCGCGCGA CACGCTGCTGCGCGTGCGCACCGCAACCTTCGACAATCTGTTCGAGGCGGTCGCGGTCTTTGCTCCCGACGGCCGCCTGC ACCTCTGGAACCAGCGCTTCCGCCGCCTGTGGGGCGTCGACGAGCCGACGCTGGCCGCGCACCCGCGCGTCGACGTGCTG ATGGGCGGGCTCGCCGACCGGCTCGCCAAGCCGAACCAGATCAGCGTCGTCCAGGAAGTGATCCGCGCCGCGACGCTCGA ACGCCAGCAGCGCGTCGGCGAGATCCGCTTTGCCGACGGGCGCCATTTCGACTTCGCGTCGATCCCGCTGCCCGACGGTA ATGCGCTGCTCATCATGCTCGACATCACCGCCAGCCGGAAGATGGAGGGCGCGCTGCGCGAGCGCAACGAAGCGCTCGAA GCGGCCGACAAGGCCAAGACCGCCTTCCTGTCGCGGATGAGCTATGAGCTGCGTACGCCGCTGACCTCGATCGGCGGCTT CGGCGAAATGCTGCAGGCAGGCTATGCCGGCAAGCTCGGGGACCAGCAGCGCGCCTATGTCGATGCGATCATGGACTCGG TCGCGGTGCTCGGCCGCCAGATCGACAATGTTCTCGACCTCGCGCAGGGCGAGGCGGGGACGCTGGCGATCGAGCGCGCG CCGGTCGACGTCCGCGCGCTGCTCGAAAAGGCGCTCGACGACACGCGGCCTTTTGCCGATGCCGAGAAGGTCGAGCTGGT CGGCAACATCGCCGCCGACCTCGGCACGATCGAGGGCGATGCGCCGCGGCTGTCGCGCCTCGTCGCCGGGCTGCTCGACA ATGCGGTGCGCTTCACCGCGCCGGCGCGCAAATCGGCCGGTCGCGTGCTGCTTCACGCCGACGGCGACAAGCGCGGGATC GACATCATCGTCTCCGACAACGGCCCCGGAATGCCCGAAGCCGCCGCCGCGGTCGCCAAGGGGCAACAGGCGGGCACCGA CACCGGCGGCATCGGCCTCGCACTCGCGCGCCAGCTCGTCGCCGCGCACGGCGGGACGATGGAAGTGGTGAGCGAGGCGG GACAGGGCACGCTGGTGCGCGTCAGCCTGCCGCGAGGGATGTGA
Upstream 100 bases:
>100_bases GCCGATCCGCGCCGACATCCGATTGAAACATGACTCCATCGCCTTTAGGGCAGGCGATCATGCGCGCGGAACATCCGGAC AAGCGAGGACATGAGGCGGG
Downstream 100 bases:
>100_bases CAATCCTTATTGTCATCCTTTCGCGCTGGATCCCTGCGACGGCAGGGACCCATCTCCCGCGGGCTCAACTTGGCGCCGTC CGGAGATGGGCCCCTGCCTC
Product: PAS/PAC sensor signal transduction histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 787; Mature: 786
Protein sequence:
>787_residues MSGTLSPTLLFALGLFAALWLLAGLWATLRGIAMQRRAAFAGGQAERLASLVEASPQLPVIVRADWRIEASDRLGRWLGL DRGPRNFDELRGIGSGLDAASHDLLRQAILGAQRGAKPFQLSLKPEGSHRTIIVQGAAAPQAVGGAGSVLLWLSDATEGQ QALAHARAERDEALAAFEALSGLIEAAPFPMWFRDTDLQLALVNAAYVRAVEARSATAVIDGGIELCETVAGVSAADAAD AARAAGSAQQRTIPVTIEGERRIMRVVDVPLAPEGGRMIGIAGYAIDIQELESERGAHRRFVDTQRELLDRLSAAVAQFG PDQGLAFANLPFRRLFGLDADDVGEARPFARLLDAWRERGRTPEVRDYPEWRQAHVDWFARAEASEEDWRLRDGTHLHVV AQPTPDGGLLLIAEDKTEQVQLAGARDTLLRVRTATFDNLFEAVAVFAPDGRLHLWNQRFRRLWGVDEPTLAAHPRVDVL MGGLADRLAKPNQISVVQEVIRAATLERQQRVGEIRFADGRHFDFASIPLPDGNALLIMLDITASRKMEGALRERNEALE AADKAKTAFLSRMSYELRTPLTSIGGFGEMLQAGYAGKLGDQQRAYVDAIMDSVAVLGRQIDNVLDLAQGEAGTLAIERA PVDVRALLEKALDDTRPFADAEKVELVGNIAADLGTIEGDAPRLSRLVAGLLDNAVRFTAPARKSAGRVLLHADGDKRGI DIIVSDNGPGMPEAAAAVAKGQQAGTDTGGIGLALARQLVAAHGGTMEVVSEAGQGTLVRVSLPRGM
Sequences:
>Translated_787_residues MSGTLSPTLLFALGLFAALWLLAGLWATLRGIAMQRRAAFAGGQAERLASLVEASPQLPVIVRADWRIEASDRLGRWLGL DRGPRNFDELRGIGSGLDAASHDLLRQAILGAQRGAKPFQLSLKPEGSHRTIIVQGAAAPQAVGGAGSVLLWLSDATEGQ QALAHARAERDEALAAFEALSGLIEAAPFPMWFRDTDLQLALVNAAYVRAVEARSATAVIDGGIELCETVAGVSAADAAD AARAAGSAQQRTIPVTIEGERRIMRVVDVPLAPEGGRMIGIAGYAIDIQELESERGAHRRFVDTQRELLDRLSAAVAQFG PDQGLAFANLPFRRLFGLDADDVGEARPFARLLDAWRERGRTPEVRDYPEWRQAHVDWFARAEASEEDWRLRDGTHLHVV AQPTPDGGLLLIAEDKTEQVQLAGARDTLLRVRTATFDNLFEAVAVFAPDGRLHLWNQRFRRLWGVDEPTLAAHPRVDVL MGGLADRLAKPNQISVVQEVIRAATLERQQRVGEIRFADGRHFDFASIPLPDGNALLIMLDITASRKMEGALRERNEALE AADKAKTAFLSRMSYELRTPLTSIGGFGEMLQAGYAGKLGDQQRAYVDAIMDSVAVLGRQIDNVLDLAQGEAGTLAIERA PVDVRALLEKALDDTRPFADAEKVELVGNIAADLGTIEGDAPRLSRLVAGLLDNAVRFTAPARKSAGRVLLHADGDKRGI DIIVSDNGPGMPEAAAAVAKGQQAGTDTGGIGLALARQLVAAHGGTMEVVSEAGQGTLVRVSLPRGM >Mature_786_residues SGTLSPTLLFALGLFAALWLLAGLWATLRGIAMQRRAAFAGGQAERLASLVEASPQLPVIVRADWRIEASDRLGRWLGLD RGPRNFDELRGIGSGLDAASHDLLRQAILGAQRGAKPFQLSLKPEGSHRTIIVQGAAAPQAVGGAGSVLLWLSDATEGQQ ALAHARAERDEALAAFEALSGLIEAAPFPMWFRDTDLQLALVNAAYVRAVEARSATAVIDGGIELCETVAGVSAADAADA ARAAGSAQQRTIPVTIEGERRIMRVVDVPLAPEGGRMIGIAGYAIDIQELESERGAHRRFVDTQRELLDRLSAAVAQFGP DQGLAFANLPFRRLFGLDADDVGEARPFARLLDAWRERGRTPEVRDYPEWRQAHVDWFARAEASEEDWRLRDGTHLHVVA QPTPDGGLLLIAEDKTEQVQLAGARDTLLRVRTATFDNLFEAVAVFAPDGRLHLWNQRFRRLWGVDEPTLAAHPRVDVLM GGLADRLAKPNQISVVQEVIRAATLERQQRVGEIRFADGRHFDFASIPLPDGNALLIMLDITASRKMEGALRERNEALEA ADKAKTAFLSRMSYELRTPLTSIGGFGEMLQAGYAGKLGDQQRAYVDAIMDSVAVLGRQIDNVLDLAQGEAGTLAIERAP VDVRALLEKALDDTRPFADAEKVELVGNIAADLGTIEGDAPRLSRLVAGLLDNAVRFTAPARKSAGRVLLHADGDKRGID IIVSDNGPGMPEAAAAVAKGQQAGTDTGGIGLALARQLVAAHGGTMEVVSEAGQGTLVRVSLPRGM
Specific function: Required for cell division and growth. It catalyzes the phosphorylation of CtrA and activates transcription in vitro of the cell cycle-regulated fliF promoter [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Single-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
Organism=Escherichia coli, GI145693157, Length=321, Percent_Identity=28.3489096573209, Blast_Score=116, Evalue=5e-27, Organism=Escherichia coli, GI1788713, Length=277, Percent_Identity=28.158844765343, Blast_Score=91, Evalue=4e-19, Organism=Escherichia coli, GI1789149, Length=236, Percent_Identity=29.2372881355932, Blast_Score=88, Evalue=2e-18, Organism=Escherichia coli, GI1786912, Length=252, Percent_Identity=28.968253968254, Blast_Score=86, Evalue=8e-18, Organism=Escherichia coli, GI48994928, Length=286, Percent_Identity=29.020979020979, Blast_Score=85, Evalue=2e-17, Organism=Escherichia coli, GI87081816, Length=235, Percent_Identity=31.063829787234, Blast_Score=83, Evalue=5e-17, Organism=Escherichia coli, GI1788393, Length=235, Percent_Identity=27.6595744680851, Blast_Score=74, Evalue=3e-14, Organism=Escherichia coli, GI1786600, Length=274, Percent_Identity=22.992700729927, Blast_Score=71, Evalue=2e-13, Organism=Escherichia coli, GI87082128, Length=237, Percent_Identity=27.0042194092827, Blast_Score=65, Evalue=2e-11, Organism=Escherichia coli, GI1786783, Length=241, Percent_Identity=25.3112033195021, Blast_Score=64, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 84521; Mature: 84390
Theoretical pI: Translated: 5.25; Mature: 5.25
Prosite motif: PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGTLSPTLLFALGLFAALWLLAGLWATLRGIAMQRRAAFAGGQAERLASLVEASPQLPV CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCE IVRADWRIEASDRLGRWLGLDRGPRNFDELRGIGSGLDAASHDLLRQAILGAQRGAKPFQ EEECCCEEECHHHHHHHHCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEE LSLKPEGSHRTIIVQGAAAPQAVGGAGSVLLWLSDATEGQQALAHARAERDEALAAFEAL EEECCCCCCCEEEEECCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH SGLIEAAPFPMWFRDTDLQLALVNAAYVRAVEARSATAVIDGGIELCETVAGVSAADAAD HHHHHHCCCCEEEECCCCEEEEEHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCHHHHHH AARAAGSAQQRTIPVTIEGERRIMRVVDVPLAPEGGRMIGIAGYAIDIQELESERGAHRR HHHHCCCCCCCEEEEEECCCCEEEEEEECCCCCCCCCEEEEEEEEEEHHHHHHHCCHHHH FVDTQRELLDRLSAAVAQFGPDQGLAFANLPFRRLFGLDADDVGEARPFARLLDAWRERG HHHHHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHCCCCCCCCCCCHHHHHHHHHHHCC RTPEVRDYPEWRQAHVDWFARAEASEEDWRLRDGTHLHVVAQPTPDGGLLLIAEDKTEQV CCCCCCCCHHHHHHHHHHHHHCCCCCCCCEECCCCEEEEEEECCCCCCEEEEECCCCCEE QLAGARDTLLRVRTATFDNLFEAVAVFAPDGRLHLWNQRFRRLWGVDEPTLAAHPRVDVL EECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCHHHH MGGLADRLAKPNQISVVQEVIRAATLERQQRVGEIRFADGRHFDFASIPLPDGNALLIML HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCEEECCCCCCCEEEEEE DITASRKMEGALRERNEALEAADKAKTAFLSRMSYELRTPLTSIGGFGEMLQAGYAGKLG ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHCCCCCCCC DQQRAYVDAIMDSVAVLGRQIDNVLDLAQGEAGTLAIERAPVDVRALLEKALDDTRPFAD CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCC AEKVELVGNIAADLGTIEGDAPRLSRLVAGLLDNAVRFTAPARKSAGRVLLHADGDKRGI CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCHHEECCCCCCCCCEEEEEECCCCCCE DIIVSDNGPGMPEAAAAVAKGQQAGTDTGGIGLALARQLVAAHGGTMEVVSEAGQGTLVR EEEECCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCEEEE VSLPRGM EECCCCC >Mature Secondary Structure SGTLSPTLLFALGLFAALWLLAGLWATLRGIAMQRRAAFAGGQAERLASLVEASPQLPV CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCE IVRADWRIEASDRLGRWLGLDRGPRNFDELRGIGSGLDAASHDLLRQAILGAQRGAKPFQ EEECCCEEECHHHHHHHHCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEE LSLKPEGSHRTIIVQGAAAPQAVGGAGSVLLWLSDATEGQQALAHARAERDEALAAFEAL EEECCCCCCCEEEEECCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH SGLIEAAPFPMWFRDTDLQLALVNAAYVRAVEARSATAVIDGGIELCETVAGVSAADAAD HHHHHHCCCCEEEECCCCEEEEEHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCHHHHHH AARAAGSAQQRTIPVTIEGERRIMRVVDVPLAPEGGRMIGIAGYAIDIQELESERGAHRR HHHHCCCCCCCEEEEEECCCCEEEEEEECCCCCCCCCEEEEEEEEEEHHHHHHHCCHHHH FVDTQRELLDRLSAAVAQFGPDQGLAFANLPFRRLFGLDADDVGEARPFARLLDAWRERG HHHHHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHCCCCCCCCCCCHHHHHHHHHHHCC RTPEVRDYPEWRQAHVDWFARAEASEEDWRLRDGTHLHVVAQPTPDGGLLLIAEDKTEQV CCCCCCCCHHHHHHHHHHHHHCCCCCCCCEECCCCEEEEEEECCCCCCEEEEECCCCCEE QLAGARDTLLRVRTATFDNLFEAVAVFAPDGRLHLWNQRFRRLWGVDEPTLAAHPRVDVL EECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCHHHH MGGLADRLAKPNQISVVQEVIRAATLERQQRVGEIRFADGRHFDFASIPLPDGNALLIML HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCEEECCCCCCCEEEEEE DITASRKMEGALRERNEALEAADKAKTAFLSRMSYELRTPLTSIGGFGEMLQAGYAGKLG ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHCCCCCCCC DQQRAYVDAIMDSVAVLGRQIDNVLDLAQGEAGTLAIERAPVDVRALLEKALDDTRPFAD CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCC AEKVELVGNIAADLGTIEGDAPRLSRLVAGLLDNAVRFTAPARKSAGRVLLHADGDKRGI CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCHHEECCCCCCCCCEEEEEECCCCCCE DIIVSDNGPGMPEAAAAVAKGQQAGTDTGGIGLALARQLVAAHGGTMEVVSEAGQGTLVR EEEECCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCEEEE VSLPRGM EECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10557274; 11259647 [H]