| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103485629
Identifier: 103485629
GI number: 103485629
Start: 128017
End: 128427
Strand: Direct
Name: 103485629
Synonym: Sala_0133
Alternate gene names: NA
Gene position: 128017-128427 (Clockwise)
Preceding gene: 103485623
Following gene: 103485631
Centisome position: 3.83
GC content: 61.07
Gene sequence:
>411_bases ATGGCGCGACCGGGCGCTCGCTATCGAATTCTGGATTGCGACCGCGTTGATGGGTGGCTCATTCCTCGTCGGGGCATGGC AGGCGCTCAAATATTTGTTCTAGCGGTGCAGGTGGTGCAGTGGGGCTACGCGCCGGCCGCCAGCGGCGAAGAAGCAATAT TCTCGGGAGCCACACCGTCGACATCGACCAGGTCTTCACCGACCACGATGCCGGTAATGCGAACACGCTTTTCGATATGG TCGACCGGAACGCGGTGGAGGTCGAGGCGCCACCGACCGCCAAGGTCACGGCGAAGCGAGAATCCGCCCGCGTCGCGGAG CAAGGTTCCCGTCTCTTCGATTCTCGTGCCGATCATCATCATGTCGTTGGCCTACCCAAAGTCGCAACACCGCGCCAGAA ACTTTGGATGA
Upstream 100 bases:
>100_bases GCCTATTCCGTAGGATTTTGTCGCCACCAAGCGTGGATTAATCGCTTTCCTACAATATTTCGCGCTGTCATGCCGAGCCT ATGCAAGTACGCGGAACCAA
Downstream 100 bases:
>100_bases AGGCCTTTCAACCCAGCCTAAATGCTCAGCGCCGCCGAAATGGCTCGCAAGCCACCCCGTCACCGTCGCCATCCATTTCT GGCCGATATCCCGGCTGACC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 136; Mature: 135
Protein sequence:
>136_residues MARPGARYRILDCDRVDGWLIPRRGMAGAQIFVLAVQVVQWGYAPAASGEEAIFSGATPSTSTRSSPTTMPVMRTRFSIW STGTRWRSRRHRPPRSRRSENPPASRSKVPVSSILVPIIIMSLAYPKSQHRARNFG
Sequences:
>Translated_136_residues MARPGARYRILDCDRVDGWLIPRRGMAGAQIFVLAVQVVQWGYAPAASGEEAIFSGATPSTSTRSSPTTMPVMRTRFSIW STGTRWRSRRHRPPRSRRSENPPASRSKVPVSSILVPIIIMSLAYPKSQHRARNFG >Mature_135_residues ARPGARYRILDCDRVDGWLIPRRGMAGAQIFVLAVQVVQWGYAPAASGEEAIFSGATPSTSTRSSPTTMPVMRTRFSIWS TGTRWRSRRHRPPRSRRSENPPASRSKVPVSSILVPIIIMSLAYPKSQHRARNFG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15194; Mature: 15063
Theoretical pI: Translated: 12.42; Mature: 12.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARPGARYRILDCDRVDGWLIPRRGMAGAQIFVLAVQVVQWGYAPAASGEEAIFSGATPS CCCCCCCEEEEECCCCCCEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCC TSTRSSPTTMPVMRTRFSIWSTGTRWRSRRHRPPRSRRSENPPASRSKVPVSSILVPIII CCCCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH MSLAYPKSQHRARNFG HHHCCCCHHHHCCCCC >Mature Secondary Structure ARPGARYRILDCDRVDGWLIPRRGMAGAQIFVLAVQVVQWGYAPAASGEEAIFSGATPS CCCCCCEEEEECCCCCCEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCC TSTRSSPTTMPVMRTRFSIWSTGTRWRSRRHRPPRSRRSENPPASRSKVPVSSILVPIII CCCCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH MSLAYPKSQHRARNFG HHHCCCCHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA