| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103485624
Identifier: 103485624
GI number: 103485624
Start: 123317
End: 124228
Strand: Reverse
Name: 103485624
Synonym: Sala_0128
Alternate gene names: NA
Gene position: 124228-123317 (Counterclockwise)
Preceding gene: 103485625
Following gene: 103485619
Centisome position: 3.71
GC content: 62.94
Gene sequence:
>912_bases TTGGGACCGCATTCGGAGCGCAAGGAACAACGGCTTCTCCTGTTCTCCGCCACCGGCACCCTCGCCCTTTCCCTTGTTGG CATCGCTATTGGCCTGTTGAGCGGCGCAAAGTCGATCTTGTTCGACGGTGTGTACAGCCTTGCCGACGCAGGGCTTACGC TGGCCGCCTTTTTCGCCGCGCGGCTGATCGCGCGTGGCGCAGACCGCCGGTTCCAATATGGCTACTGGCACATCGAGCCG ATGCTTGGGTTCGTCAACGGCAGCGTTCTGCTCCTCGCCTGCGCCTATGCATTGATTGACGGAGTAGACACCGTGATGAT GGGAGGACGGAACGTGAGTTTCGGGCCCGGTATCGGATATGCCGGCGCGAGCGCGCTCATCGGCTTCGGGATGTATATTT ATATCCGGCGCCGCGCTCGCGGCCTCGGGTCCTCGCTTCTGAATATCGACGCGGCCGCGTGGCTTTTCGGCGCACTTCTC AACGCCGGGCTGAGCGCCGCATTTGTCACCGCGGTCGTGCTCGAGGGAACGCAGGCGGAGAAGCTCTCGGCCTATTTCGA TCCGGCAATCCTCATCCTCCTTGCAATCTTCCTGGCTCCGCTTCCCCTTCGGGCCTTGGCAGCGGCCGGTCGCGAGATAC TGCAGATCGCGCCAGCCGATCTCGATGCGCAGGTCAGCAGCATCGCACGCGAAGTCGCGGCACGGCACGGCTTCGTCGAG CATCAATCCTATGTGACCCAGGTCGGCCGCGCAGGGTTTATCGAGATCGGCTTTGTCGGTGCCGCGGCATCGACCACGAT GACGCTTGGCGAGCAGGACGCCATTCGTCAGGAATTTGCGGACGCGATGGGCGGGCTGCGCCCCGGATATTGGCTCACGA TCGACTTCACGGCCGATCGCCGTTGGCTCTAA
Upstream 100 bases:
>100_bases TAGGTCAGGCCAGTTGGAAATACATCGCCGGCAGCGTAACTCGCTACGATAACAGCCTCAGGTGACGGCCCTTGGACCGC TGTAATATTGGAGATGGAAA
Downstream 100 bases:
>100_bases GCGCGAGCAACTCCGGGGCGGCTCACGGTAACGCGCAAACGGGCGCCCGCTGTTCGGCGGACGCCCGTTAGTTTCAGACG AGCATCTTTTCGCGCAGCAG
Product: cation diffusion facilitator family transporter
Products: NA
Alternate protein names: Cation Efflux Protein; Cation Transporter-Like Membrane Protein; Co/Zn/Cd Cation Transporter; Cation Efflux Transmembrane Protein; Cobalt-Zinc-Cadmium Resistance Protein; Cation Efflux Transporter Protein; Cation Efflux System Component; Cation Efflux Family Protein
Number of amino acids: Translated: 303; Mature: 302
Protein sequence:
>303_residues MGPHSERKEQRLLLFSATGTLALSLVGIAIGLLSGAKSILFDGVYSLADAGLTLAAFFAARLIARGADRRFQYGYWHIEP MLGFVNGSVLLLACAYALIDGVDTVMMGGRNVSFGPGIGYAGASALIGFGMYIYIRRRARGLGSSLLNIDAAAWLFGALL NAGLSAAFVTAVVLEGTQAEKLSAYFDPAILILLAIFLAPLPLRALAAAGREILQIAPADLDAQVSSIAREVAARHGFVE HQSYVTQVGRAGFIEIGFVGAAASTTMTLGEQDAIRQEFADAMGGLRPGYWLTIDFTADRRWL
Sequences:
>Translated_303_residues MGPHSERKEQRLLLFSATGTLALSLVGIAIGLLSGAKSILFDGVYSLADAGLTLAAFFAARLIARGADRRFQYGYWHIEP MLGFVNGSVLLLACAYALIDGVDTVMMGGRNVSFGPGIGYAGASALIGFGMYIYIRRRARGLGSSLLNIDAAAWLFGALL NAGLSAAFVTAVVLEGTQAEKLSAYFDPAILILLAIFLAPLPLRALAAAGREILQIAPADLDAQVSSIAREVAARHGFVE HQSYVTQVGRAGFIEIGFVGAAASTTMTLGEQDAIRQEFADAMGGLRPGYWLTIDFTADRRWL >Mature_302_residues GPHSERKEQRLLLFSATGTLALSLVGIAIGLLSGAKSILFDGVYSLADAGLTLAAFFAARLIARGADRRFQYGYWHIEPM LGFVNGSVLLLACAYALIDGVDTVMMGGRNVSFGPGIGYAGASALIGFGMYIYIRRRARGLGSSLLNIDAAAWLFGALLN AGLSAAFVTAVVLEGTQAEKLSAYFDPAILILLAIFLAPLPLRALAAAGREILQIAPADLDAQVSSIAREVAARHGFVEH QSYVTQVGRAGFIEIGFVGAAASTTMTLGEQDAIRQEFADAMGGLRPGYWLTIDFTADRRWL
Specific function: Unknown
COG id: COG3965
COG function: function code P; Predicted Co/Zn/Cd cation transporters
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32125; Mature: 31993
Theoretical pI: Translated: 6.96; Mature: 6.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGPHSERKEQRLLLFSATGTLALSLVGIAIGLLSGAKSILFDGVYSLADAGLTLAAFFAA CCCCCCCHHHEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH RLIARGADRRFQYGYWHIEPMLGFVNGSVLLLACAYALIDGVDTVMMGGRNVSFGPGIGY HHHHHCCCCCEECCEEEHHHHHHHHCHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCCCCH AGASALIGFGMYIYIRRRARGLGSSLLNIDAAAWLFGALLNAGLSAAFVTAVVLEGTQAE HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHH KLSAYFDPAILILLAIFLAPLPLRALAAAGREILQIAPADLDAQVSSIAREVAARHGFVE HHHHHCCHHHHHHHHHHHCCCCHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCHH HQSYVTQVGRAGFIEIGFVGAAASTTMTLGEQDAIRQEFADAMGGLRPGYWLTIDFTADR HHHHHHHHCCCCEEEEEEECCHHHHHEECCCHHHHHHHHHHHHCCCCCCEEEEEEECCCC RWL CCC >Mature Secondary Structure GPHSERKEQRLLLFSATGTLALSLVGIAIGLLSGAKSILFDGVYSLADAGLTLAAFFAA CCCCCCHHHEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH RLIARGADRRFQYGYWHIEPMLGFVNGSVLLLACAYALIDGVDTVMMGGRNVSFGPGIGY HHHHHCCCCCEECCEEEHHHHHHHHCHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCCCCH AGASALIGFGMYIYIRRRARGLGSSLLNIDAAAWLFGALLNAGLSAAFVTAVVLEGTQAE HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHH KLSAYFDPAILILLAIFLAPLPLRALAAAGREILQIAPADLDAQVSSIAREVAARHGFVE HHHHHCCHHHHHHHHHHHCCCCHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCHH HQSYVTQVGRAGFIEIGFVGAAASTTMTLGEQDAIRQEFADAMGGLRPGYWLTIDFTADR HHHHHHHHCCCCEEEEEEECCHHHHHEECCCHHHHHHHHHHHHCCCCCCEEEEEEECCCC RWL CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA