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The map label for this gene is yhjC [C]

Identifier: 103485619

GI number: 103485619

Start: 119945

End: 120850

Strand: Reverse

Name: yhjC [C]

Synonym: Sala_0123

Alternate gene names: 103485619

Gene position: 120850-119945 (Counterclockwise)

Preceding gene: 103485624

Following gene: 103485618

Centisome position: 3.61

GC content: 65.34

Gene sequence:

>906_bases
ATGGATCGACTTGCCGTCATGGAGCAGTTCCTCGCCGTGGCCGAGGCGGGTTCCTTTTCCGCGGCGGCGCGACGGCTCAA
TGTCGGTCAGCCATCGATTTCGAAAGCCGTGGCGCAGCTTGAGGCCTATCTCGGCGTCCGGCTGTTCCAGCGCTCAACCC
GCAGCCTGACGCTCACCGAGGCGGGCCGTCGCTACCGCGACGGCGCCGAGCGTGCGATTGCAGCCGCCGCCGCCGCGGAG
ATTGCCGCCAAGGAAGACGGGGGCCGTCTCGCCGGACCGGTGCGCGTCGTGGTCCCGACTTGCCTTGCCCGGCTGCATCT
CGTGCCGCGTCTCCGGGAATTCTCTGATCGCTTTCCCGAAGTCACGCTCGATCTGGAGATCACCGATCGCGAAACCGATG
TCGTGGCATCGGGCGTGGATATCGCGCTGCGAATTGGCACGCTCGCCGACACCGCGCTCGTCGCCTCTCGCATGGCGCGC
ACGCGGATGGCGCTGGTCGCGAACAAGGCCGAAAATGGTCTCGACGCCCCGCACAATTTCATGGGGCAGCCCGCGATCAT
CTCGCGCCTTCATCATGCGAAGAATAGCTGGGTCTTCCGCCATGGCAGCGCGCGCATCGCGATCATGGTGCATCCTGCGC
TCATTCTCGACAGCGACGACGCAGCCCGGTCGGCAGCGCTTGCCGGTCTCGGCTATGCGATGTTGCCCCGGCCCTTCGTC
GCCGATCTGATCGATACCGGCGATCTTGTCGAGTTGCTGCCCAACCATATGCTCGAAGACATTGATCTATGGGCCCTGCT
GCCGGCTGGCCGCGACCAGACCGCGAGAGTGCGCGCTTTTCTCGACTGGCTCCGCCCGCAGATGAACGCGATCTTTGCCG
ATGAGCGACCCGGCTTGCTCTCATGA

Upstream 100 bases:

>100_bases
TGTCTCGGGTCCGTTTTTGCGGATGAGCCGTATTTAGGCTGTAGCGATTGCTTGCGGCAGATGGGTTGAGTCGATAGGAC
CTATTCCGCAGGGGAATGAA

Downstream 100 bases:

>100_bases
ACGCTATTGCGGTTGCCATCGCTGCTTCGATGCTGAGTTTTGCGATGGGTTTCGCGATCAGGCGGGGGACGGTCTGCGTG
GTCGTTGCGGCGCAGGATCT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MDRLAVMEQFLAVAEAGSFSAAARRLNVGQPSISKAVAQLEAYLGVRLFQRSTRSLTLTEAGRRYRDGAERAIAAAAAAE
IAAKEDGGRLAGPVRVVVPTCLARLHLVPRLREFSDRFPEVTLDLEITDRETDVVASGVDIALRIGTLADTALVASRMAR
TRMALVANKAENGLDAPHNFMGQPAIISRLHHAKNSWVFRHGSARIAIMVHPALILDSDDAARSAALAGLGYAMLPRPFV
ADLIDTGDLVELLPNHMLEDIDLWALLPAGRDQTARVRAFLDWLRPQMNAIFADERPGLLS

Sequences:

>Translated_301_residues
MDRLAVMEQFLAVAEAGSFSAAARRLNVGQPSISKAVAQLEAYLGVRLFQRSTRSLTLTEAGRRYRDGAERAIAAAAAAE
IAAKEDGGRLAGPVRVVVPTCLARLHLVPRLREFSDRFPEVTLDLEITDRETDVVASGVDIALRIGTLADTALVASRMAR
TRMALVANKAENGLDAPHNFMGQPAIISRLHHAKNSWVFRHGSARIAIMVHPALILDSDDAARSAALAGLGYAMLPRPFV
ADLIDTGDLVELLPNHMLEDIDLWALLPAGRDQTARVRAFLDWLRPQMNAIFADERPGLLS
>Mature_301_residues
MDRLAVMEQFLAVAEAGSFSAAARRLNVGQPSISKAVAQLEAYLGVRLFQRSTRSLTLTEAGRRYRDGAERAIAAAAAAE
IAAKEDGGRLAGPVRVVVPTCLARLHLVPRLREFSDRFPEVTLDLEITDRETDVVASGVDIALRIGTLADTALVASRMAR
TRMALVANKAENGLDAPHNFMGQPAIISRLHHAKNSWVFRHGSARIAIMVHPALILDSDDAARSAALAGLGYAMLPRPFV
ADLIDTGDLVELLPNHMLEDIDLWALLPAGRDQTARVRAFLDWLRPQMNAIFADERPGLLS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=298, Percent_Identity=29.1946308724832, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1786401, Length=286, Percent_Identity=30.7692307692308, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI1787128, Length=285, Percent_Identity=28.0701754385965, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1789639, Length=280, Percent_Identity=28.9285714285714, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI87081978, Length=297, Percent_Identity=27.6094276094276, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1787589, Length=306, Percent_Identity=27.1241830065359, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI157672245, Length=125, Percent_Identity=38.4, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1789440, Length=291, Percent_Identity=22.680412371134, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1788706, Length=301, Percent_Identity=22.2591362126246, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1789173, Length=285, Percent_Identity=23.859649122807, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1787601, Length=114, Percent_Identity=30.7017543859649, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788481, Length=299, Percent_Identity=24.0802675585284, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1786448, Length=289, Percent_Identity=24.2214532871972, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1788748, Length=123, Percent_Identity=32.520325203252, Blast_Score=62, Evalue=6e-11,
Organism=Escherichia coli, GI1787879, Length=152, Percent_Identity=33.5526315789474, Blast_Score=61, Evalue=1e-10,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32683; Mature: 32683

Theoretical pI: Translated: 7.24; Mature: 7.24

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRLAVMEQFLAVAEAGSFSAAARRLNVGQPSISKAVAQLEAYLGVRLFQRSTRSLTLTE
CCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEHHH
AGRRYRDGAERAIAAAAAAEIAAKEDGGRLAGPVRVVVPTCLARLHLVPRLREFSDRFPE
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
VTLDLEITDRETDVVASGVDIALRIGTLADTALVASRMARTRMALVANKAENGLDAPHNF
EEEEEEECCCCHHHHHCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
MGQPAIISRLHHAKNSWVFRHGSARIAIMVHPALILDSDDAARSAALAGLGYAMLPRPFV
CCCHHHHHHHHHCCCCEEEEECCEEEEEEEECEEEECCCHHHHHHHHHHCCHHHCCCHHH
ADLIDTGDLVELLPNHMLEDIDLWALLPAGRDQTARVRAFLDWLRPQMNAIFADERPGLL
HHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHEEECCCCCCCC
S
C
>Mature Secondary Structure
MDRLAVMEQFLAVAEAGSFSAAARRLNVGQPSISKAVAQLEAYLGVRLFQRSTRSLTLTE
CCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEHHH
AGRRYRDGAERAIAAAAAAEIAAKEDGGRLAGPVRVVVPTCLARLHLVPRLREFSDRFPE
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
VTLDLEITDRETDVVASGVDIALRIGTLADTALVASRMARTRMALVANKAENGLDAPHNF
EEEEEEECCCCHHHHHCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
MGQPAIISRLHHAKNSWVFRHGSARIAIMVHPALILDSDDAARSAALAGLGYAMLPRPFV
CCCHHHHHHHHHCCCCEEEEECCEEEEEEEECEEEECCCHHHHHHHHHHCCHHHCCCHHH
ADLIDTGDLVELLPNHMLEDIDLWALLPAGRDQTARVRAFLDWLRPQMNAIFADERPGLL
HHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHEEECCCCCCCC
S
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]