| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103485618
Identifier: 103485618
GI number: 103485618
Start: 118968
End: 119867
Strand: Reverse
Name: 103485618
Synonym: Sala_0122
Alternate gene names: NA
Gene position: 119867-118968 (Counterclockwise)
Preceding gene: 103485619
Following gene: 103485617
Centisome position: 3.58
GC content: 64.78
Gene sequence:
>900_bases GTGGTCGTTGCGGCGCAGGATCTTGTCGTGCGGCGCCGACCCGACAAGTTCATCGGGTTCGCGACGGCGGCTTGCTGGTC AGGGCTTCTGCTTGTTCCACTGGCATGGACCGCACCAGCTGTTTTCCATCTGTCCCCGGGCTACGACCAGCTGATCCAGG CTTTCCTGTTCGGGTGTCTTTACGGGATCGGCGCGTGGGCGAACCAGGCTTGCGGCTTTGGAACACTCGCGCATTTGACC GGCGGCAGGCTCGGATATCTTCTGACCCTCGCCGGCTGGGTAATCGGCGCCTCGTTCATATCCAAAGTCTACAGGCCCCA GCAAATTCCCGAGCCCTCGCTGCTTGCGACGTCACCGCTCGCCGCGATAGCGGCGTGGCTGGCCTTCGCCGCAGTCTGCT GGTGGAGCTGGCCGCGCCTGCGACTGTTGCGCCGCCGGTCGCGCTGGCGCAAGATGCTGCTTGGACGCGCGCGGATGCGT CCCTTCGAGGCCATGCTCATCATCGGCATCGGCGGCGGCCTGCTGTACGCCTGCGCCGGGAGCTGGACCTATCTGGGCCT CCTGTCCAGCTACGCCTCGCAGCTCGTCATGCACGATTTCGCCCCGATTTCTCCTTTGCCGGCGCTTTTGGGCACCGCGA TGATGATCGGCGGCGGACTATTTGCAGCCGTCCGCTCCGCCAGCTTCCGGTTGCGCGGCACCAACTGGCGTCAAGGCTCG CGGCATCTCGTCGGCGGCACCATCATGGGGTTGGCCACCCAGCTCATCCCGGGCGGCAATGGGGTCATCATCGTCTACGG GCTGCCCTCCTTCGCTCCCCATGCCCTGACCGCCTATTTCGGGATGACATTGACCCTCATGCTCATCTTCGCCGCCACAA ACTATTCCCGCAGGGCATAG
Upstream 100 bases:
>100_bases AGCGACCCGGCTTGCTCTCATGAACGCTATTGCGGTTGCCATCGCTGCTTCGATGCTGAGTTTTGCGATGGGTTTCGCGA TCAGGCGGGGGACGGTCTGC
Downstream 100 bases:
>100_bases AAACCATGCCCACGGGCCAACTGTTTTTGCGCGCTCGATGCGCGCAATATGCGCATCGTGTAATCAGGAAGGGACAGCGG GATGACCGATTTCGACTATG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 299; Mature: 299
Protein sequence:
>299_residues MVVAAQDLVVRRRPDKFIGFATAACWSGLLLVPLAWTAPAVFHLSPGYDQLIQAFLFGCLYGIGAWANQACGFGTLAHLT GGRLGYLLTLAGWVIGASFISKVYRPQQIPEPSLLATSPLAAIAAWLAFAAVCWWSWPRLRLLRRRSRWRKMLLGRARMR PFEAMLIIGIGGGLLYACAGSWTYLGLLSSYASQLVMHDFAPISPLPALLGTAMMIGGGLFAAVRSASFRLRGTNWRQGS RHLVGGTIMGLATQLIPGGNGVIIVYGLPSFAPHALTAYFGMTLTLMLIFAATNYSRRA
Sequences:
>Translated_299_residues MVVAAQDLVVRRRPDKFIGFATAACWSGLLLVPLAWTAPAVFHLSPGYDQLIQAFLFGCLYGIGAWANQACGFGTLAHLT GGRLGYLLTLAGWVIGASFISKVYRPQQIPEPSLLATSPLAAIAAWLAFAAVCWWSWPRLRLLRRRSRWRKMLLGRARMR PFEAMLIIGIGGGLLYACAGSWTYLGLLSSYASQLVMHDFAPISPLPALLGTAMMIGGGLFAAVRSASFRLRGTNWRQGS RHLVGGTIMGLATQLIPGGNGVIIVYGLPSFAPHALTAYFGMTLTLMLIFAATNYSRRA >Mature_299_residues MVVAAQDLVVRRRPDKFIGFATAACWSGLLLVPLAWTAPAVFHLSPGYDQLIQAFLFGCLYGIGAWANQACGFGTLAHLT GGRLGYLLTLAGWVIGASFISKVYRPQQIPEPSLLATSPLAAIAAWLAFAAVCWWSWPRLRLLRRRSRWRKMLLGRARMR PFEAMLIIGIGGGLLYACAGSWTYLGLLSSYASQLVMHDFAPISPLPALLGTAMMIGGGLFAAVRSASFRLRGTNWRQGS RHLVGGTIMGLATQLIPGGNGVIIVYGLPSFAPHALTAYFGMTLTLMLIFAATNYSRRA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32351; Mature: 32351
Theoretical pI: Translated: 11.30; Mature: 11.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVVAAQDLVVRRRPDKFIGFATAACWSGLLLVPLAWTAPAVFHLSPGYDQLIQAFLFGCL CEEECHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHH YGIGAWANQACGFGTLAHLTGGRLGYLLTLAGWVIGASFISKVYRPQQIPEPSLLATSPL HHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCHH AAIAAWLAFAAVCWWSWPRLRLLRRRSRWRKMLLGRARMRPFEAMLIIGIGGGLLYACAG HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHCC SWTYLGLLSSYASQLVMHDFAPISPLPALLGTAMMIGGGLFAAVRSASFRLRGTNWRQGS CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCC RHLVGGTIMGLATQLIPGGNGVIIVYGLPSFAPHALTAYFGMTLTLMLIFAATNYSRRA CEEHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MVVAAQDLVVRRRPDKFIGFATAACWSGLLLVPLAWTAPAVFHLSPGYDQLIQAFLFGCL CEEECHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHH YGIGAWANQACGFGTLAHLTGGRLGYLLTLAGWVIGASFISKVYRPQQIPEPSLLATSPL HHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCHH AAIAAWLAFAAVCWWSWPRLRLLRRRSRWRKMLLGRARMRPFEAMLIIGIGGGLLYACAG HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHCC SWTYLGLLSSYASQLVMHDFAPISPLPALLGTAMMIGGGLFAAVRSASFRLRGTNWRQGS CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCC RHLVGGTIMGLATQLIPGGNGVIIVYGLPSFAPHALTAYFGMTLTLMLIFAATNYSRRA CEEHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA