| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is yfjQ [H]
Identifier: 103485595
GI number: 103485595
Start: 100205
End: 101173
Strand: Direct
Name: yfjQ [H]
Synonym: Sala_0098
Alternate gene names: 103485595
Gene position: 100205-101173 (Clockwise)
Preceding gene: 103485594
Following gene: 103485596
Centisome position: 3.0
GC content: 58.2
Gene sequence:
>969_bases ATGAGCGTCATCGCTGCTTATTATTACAACAAGGGCCTGCGGGTCCGCGAAATCGCGATCGACGAGCAGGTCCAGCTCGA TAAGGATCGCTCCGGCTTTTGCTGGATCGCGCTTCGCGAGCCCACCGCCGACGAGCTTAAAGCGATCCAAACGACGTATA ACCTCCATCCGTTGGCAATCGACAACGCGATGCACCCGCTCTGCCCGCCCAAGCTCGAAGCGTATAATGAAGAGCTCTAT GTTGTCGCTCAGACCGCCGAGCTGGATGGAGACCAGATCCGCTACGGCAAGATGGCGATCTTCACCGGTCACAACCATCT CATCAGCGTACGGCACGGCAACGGCGGAGCGCTCGGCAATCTTCGCGAGCAACTCGAGGCTTCGCCGGCGCTTTTTGGCA AAGGTGTCGACTATGTGCTGCATGCGATCCTGCACCGGATCGTCGATCAATATCTTCCCATCTTCGAGATGATCGAGGAT GACGTTCTGGCGATGGAGAGACGATCGCTCGACGACTTTCTCGGACGGGCAGAAATCGACCGCATCTTCGGGCTGAGAAG CGAACTCACGCGCTTCCAGCGCACGCTCGGCGCTATGGCTGAACTGGTCCGGAAACTCGTCCGAGGCCATTTCCCCTGCA TCAGTTCAGAAGTCAGACCCTATTTCAGCGACGTCGCGGATCATGTCGCTCGCGTGCAGACCATGGTCGATGGCCTCCTG CAGGTTCTGTCCACCGTCTTCGAGTTCAGCAGCCTGTTGGAAGCGCAAAGAACGGGCGTGACCACGCGCCAGCTCGCGGC CTGGGCCGCCATATTGGCGGTCCCGACGGCCATCGCCGGGATATATGGCATGAACTTCAGGAACATGCCCGAGCTGGACA CGGTCTATGGCTATTTTGTCGTGCTCGGGTTGATGACGATGTTCTGCCTGTACCTGTTCGTGCGGTTCAAGAAGGCCAAG TGGATATGA
Upstream 100 bases:
>100_bases TCCTCGGCCTCGGCGAATATTCGAACGTCCAGACATGGCTCCGCCGCGGGCTGGCGCGGCCCGCGGTGCAGCGCGGCCTG CGCATCCCTGCGAGACCGGC
Downstream 100 bases:
>100_bases ATAGCGCGCGTTTGCTTTTCATCTCCGTCAGCTGAGCCGCAACAGCCTCCCTGATATTAGAGCATGTCCAATGCCATGCA AAGCCAAGGTGCAACAATGA
Product: Mg2+ transporter protein, CorA-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 322; Mature: 321
Protein sequence:
>322_residues MSVIAAYYYNKGLRVREIAIDEQVQLDKDRSGFCWIALREPTADELKAIQTTYNLHPLAIDNAMHPLCPPKLEAYNEELY VVAQTAELDGDQIRYGKMAIFTGHNHLISVRHGNGGALGNLREQLEASPALFGKGVDYVLHAILHRIVDQYLPIFEMIED DVLAMERRSLDDFLGRAEIDRIFGLRSELTRFQRTLGAMAELVRKLVRGHFPCISSEVRPYFSDVADHVARVQTMVDGLL QVLSTVFEFSSLLEAQRTGVTTRQLAAWAAILAVPTAIAGIYGMNFRNMPELDTVYGYFVVLGLMTMFCLYLFVRFKKAK WI
Sequences:
>Translated_322_residues MSVIAAYYYNKGLRVREIAIDEQVQLDKDRSGFCWIALREPTADELKAIQTTYNLHPLAIDNAMHPLCPPKLEAYNEELY VVAQTAELDGDQIRYGKMAIFTGHNHLISVRHGNGGALGNLREQLEASPALFGKGVDYVLHAILHRIVDQYLPIFEMIED DVLAMERRSLDDFLGRAEIDRIFGLRSELTRFQRTLGAMAELVRKLVRGHFPCISSEVRPYFSDVADHVARVQTMVDGLL QVLSTVFEFSSLLEAQRTGVTTRQLAAWAAILAVPTAIAGIYGMNFRNMPELDTVYGYFVVLGLMTMFCLYLFVRFKKAK WI >Mature_321_residues SVIAAYYYNKGLRVREIAIDEQVQLDKDRSGFCWIALREPTADELKAIQTTYNLHPLAIDNAMHPLCPPKLEAYNEELYV VAQTAELDGDQIRYGKMAIFTGHNHLISVRHGNGGALGNLREQLEASPALFGKGVDYVLHAILHRIVDQYLPIFEMIEDD VLAMERRSLDDFLGRAEIDRIFGLRSELTRFQRTLGAMAELVRKLVRGHFPCISSEVRPYFSDVADHVARVQTMVDGLLQ VLSTVFEFSSLLEAQRTGVTTRQLAAWAAILAVPTAIAGIYGMNFRNMPELDTVYGYFVVLGLMTMFCLYLFVRFKKAKW I
Specific function: Unknown
COG id: COG0598
COG function: function code P; Mg2+ and Co2+ transporters
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the CorA metal ion transporter (MIT) (TC 1.A.35) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004488 - InterPro: IPR002523 [H]
Pfam domain/function: PF01544 CorA [H]
EC number: NA
Molecular weight: Translated: 36472; Mature: 36341
Theoretical pI: Translated: 6.42; Mature: 6.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVIAAYYYNKGLRVREIAIDEQVQLDKDRSGFCWIALREPTADELKAIQTTYNLHPLAI CCEEEEEHHCCCCEEEEEECCCHHHCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEE DNAMHPLCPPKLEAYNEELYVVAQTAELDGDQIRYGKMAIFTGHNHLISVRHGNGGALGN CCCCCCCCCCHHHHCCCCEEEEEEECCCCCCEEEECCEEEEECCCEEEEEEECCCCCHHH LREQLEASPALFGKGVDYVLHAILHRIVDQYLPIFEMIEDDVLAMERRSLDDFLGRAEID HHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RIFGLRSELTRFQRTLGAMAELVRKLVRGHFPCISSEVRPYFSDVADHVARVQTMVDGLL HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH QVLSTVFEFSSLLEAQRTGVTTRQLAAWAAILAVPTAIAGIYGMNFRNMPELDTVYGYFV HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH VLGLMTMFCLYLFVRFKKAKWI HHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure SVIAAYYYNKGLRVREIAIDEQVQLDKDRSGFCWIALREPTADELKAIQTTYNLHPLAI CEEEEEHHCCCCEEEEEECCCHHHCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEE DNAMHPLCPPKLEAYNEELYVVAQTAELDGDQIRYGKMAIFTGHNHLISVRHGNGGALGN CCCCCCCCCCHHHHCCCCEEEEEEECCCCCCEEEECCEEEEECCCEEEEEEECCCCCHHH LREQLEASPALFGKGVDYVLHAILHRIVDQYLPIFEMIEDDVLAMERRSLDDFLGRAEID HHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RIFGLRSELTRFQRTLGAMAELVRKLVRGHFPCISSEVRPYFSDVADHVARVQTMVDGLL HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH QVLSTVFEFSSLLEAQRTGVTTRQLAAWAAILAVPTAIAGIYGMNFRNMPELDTVYGYFV HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH VLGLMTMFCLYLFVRFKKAKWI HHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8969503; 9384377 [H]