BacMap

Definition	Sphingopyxis alaskensis RB2256, complete genome.
Accession	NC_008048
Length	3,345,170

Click here to switch to the map view.

The map label for this gene is ucpA [H]

Identifier: 103485576

GI number: 103485576

Start: 83846

End: 84697

Strand: Direct

Name: ucpA [H]

Synonym: Sala_0078

Alternate gene names: 103485576

Gene position: 83846-84697 (Clockwise)

Preceding gene: 103485569

Following gene: 103485583

Centisome position: 2.51

GC content: 63.62

Gene sequence:

>852_bases
ATGACAGAAACATATTTCGTGACCGGCAGCTCGGTCGGACTCGGCCGCTCGATAGTGGAGGCCGCGCTCGCGCAAGGCCA
CAATGTCGTTGCGACGGCCCGTAACCCCGCAGTTCTTGAAGACCTGGCCGCGCGCTATTCCGGGCAATTGCTGGCCGTGA
GGCTCGATGTCACAGATGCCGAGGGTGCGCGCGACGCTGTCCGGCAAGCTGTTGATAAGTTCGGACGCCTCGATGTCTTG
ATCAACAATGCCGGCTTTTCGGGCGTCGGGTCGATCGAAGATATGCCGCTCGAACTCATCGAGGCACAGCTGTCGACCAA
TTTCCTTGGCGCGGTCAATCTGACCCGGGCGGTGCTCCCGACGATGCGGGCACGGGCGCGCGGTCGCATCCTGCTTGTCT
CTTCCATCGGGGCACGTATCGCCACCGCAGGGGCCGGCGTCTATTATGCGTCCAAGGCCGCGGTCTCGGCGCTTGCCGAA
ACGCTCGCGCTGGAAGTCGGCCCCCTCGGTATCCAGGTCACGGCGGTCGAACCCGGTGCGATGCGCACGCGCTTTGCCGA
AGCCGGCTCGCTGCAGGTCTCGCCGTTCGGCCCGGCCTATGAGGCGACCGTCGGGACGACGATCGGGATGATGCAATCGC
CCGAGTACAACAACATCTTGCGCGATCCCGACGGCGTGGCAGCGATGATCCTTCAAGTGGCTGCACTGGACGATCCACCC
TCCCGAATTCTTGCCGGCGCAGACTCGTTCGAAATGGGCATTGGTTCAGGCGACGCGAGGCGCGCTTCTGATCTGCATTG
GGAAAAGCTGAGCCGCTCGGCCACCGTGGAAGAAAGGCTCCTGTCGGCCTGA

Upstream 100 bases:

>100_bases
TCCCTTTCAGTCTTCACTATAAATGACTGACTACTCAGTCATTGTCAAACCTTATCGCTGTTCCTATGTTGGCGCGCTCC
CCGCTTCCAAAGGAATCATC

Downstream 100 bases:

>100_bases
CCGGCTCGGAGATCATGCAAGCTTGGCGCGGTTCTGCAACGGTGGGCCAGACTACTGCCGAACTTCGAGCATCTCGGTGC
GATCGAGCGCCGCCTGCCTG

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 282

Protein sequence:

>283_residues
MTETYFVTGSSVGLGRSIVEAALAQGHNVVATARNPAVLEDLAARYSGQLLAVRLDVTDAEGARDAVRQAVDKFGRLDVL
INNAGFSGVGSIEDMPLELIEAQLSTNFLGAVNLTRAVLPTMRARARGRILLVSSIGARIATAGAGVYYASKAAVSALAE
TLALEVGPLGIQVTAVEPGAMRTRFAEAGSLQVSPFGPAYEATVGTTIGMMQSPEYNNILRDPDGVAAMILQVAALDDPP
SRILAGADSFEMGIGSGDARRASDLHWEKLSRSATVEERLLSA

Sequences:

>Translated_283_residues
MTETYFVTGSSVGLGRSIVEAALAQGHNVVATARNPAVLEDLAARYSGQLLAVRLDVTDAEGARDAVRQAVDKFGRLDVL
INNAGFSGVGSIEDMPLELIEAQLSTNFLGAVNLTRAVLPTMRARARGRILLVSSIGARIATAGAGVYYASKAAVSALAE
TLALEVGPLGIQVTAVEPGAMRTRFAEAGSLQVSPFGPAYEATVGTTIGMMQSPEYNNILRDPDGVAAMILQVAALDDPP
SRILAGADSFEMGIGSGDARRASDLHWEKLSRSATVEERLLSA
>Mature_282_residues
TETYFVTGSSVGLGRSIVEAALAQGHNVVATARNPAVLEDLAARYSGQLLAVRLDVTDAEGARDAVRQAVDKFGRLDVLI
NNAGFSGVGSIEDMPLELIEAQLSTNFLGAVNLTRAVLPTMRARARGRILLVSSIGARIATAGAGVYYASKAAVSALAET
LALEVGPLGIQVTAVEPGAMRTRFAEAGSLQVSPFGPAYEATVGTTIGMMQSPEYNNILRDPDGVAAMILQVAALDDPPS
RILAGADSFEMGIGSGDARRASDLHWEKLSRSATVEERLLSA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI4503817, Length=182, Percent_Identity=35.1648351648352, Blast_Score=104, Evalue=1e-22,
Organism=Homo sapiens, GI20149619, Length=189, Percent_Identity=32.2751322751323, Blast_Score=100, Evalue=3e-21,
Organism=Homo sapiens, GI7657478, Length=202, Percent_Identity=36.6336633663366, Blast_Score=95, Evalue=6e-20,
Organism=Homo sapiens, GI40548397, Length=191, Percent_Identity=32.9842931937173, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI214010158, Length=191, Percent_Identity=32.9842931937173, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI214010156, Length=191, Percent_Identity=32.9842931937173, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI22758144, Length=191, Percent_Identity=32.9842931937173, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI7706318, Length=190, Percent_Identity=32.6315789473684, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI150247226, Length=186, Percent_Identity=35.4838709677419, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI223718074, Length=191, Percent_Identity=33.5078534031414, Blast_Score=88, Evalue=8e-18,
Organism=Homo sapiens, GI32483357, Length=185, Percent_Identity=32.972972972973, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI157739938, Length=200, Percent_Identity=28, Blast_Score=86, Evalue=5e-17,
Organism=Homo sapiens, GI19743808, Length=182, Percent_Identity=35.7142857142857, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI22507405, Length=187, Percent_Identity=32.620320855615, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI5031737, Length=185, Percent_Identity=34.5945945945946, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI50726952, Length=260, Percent_Identity=30.3846153846154, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI33667109, Length=185, Percent_Identity=34.5945945945946, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI59889578, Length=164, Percent_Identity=31.0975609756098, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI119392083, Length=189, Percent_Identity=30.6878306878307, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI44680136, Length=185, Percent_Identity=30.8108108108108, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI44680133, Length=185, Percent_Identity=30.8108108108108, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI17738292, Length=185, Percent_Identity=30.8108108108108, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI40254992, Length=238, Percent_Identity=26.890756302521, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI4504503, Length=186, Percent_Identity=31.1827956989247, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI7705925, Length=184, Percent_Identity=31.5217391304348, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI19923817, Length=217, Percent_Identity=25.8064516129032, Blast_Score=73, Evalue=4e-13,
Organism=Homo sapiens, GI31542939, Length=245, Percent_Identity=26.530612244898, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI126723191, Length=189, Percent_Identity=31.2169312169312, Blast_Score=71, Evalue=9e-13,
Organism=Homo sapiens, GI109715829, Length=192, Percent_Identity=29.6875, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI66933014, Length=160, Percent_Identity=31.25, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI10190704, Length=183, Percent_Identity=30.0546448087432, Blast_Score=65, Evalue=6e-11,
Organism=Homo sapiens, GI40254986, Length=142, Percent_Identity=29.5774647887324, Blast_Score=65, Evalue=7e-11,
Organism=Escherichia coli, GI87082100, Length=200, Percent_Identity=36.5, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1786701, Length=193, Percent_Identity=36.2694300518135, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI1787820, Length=175, Percent_Identity=32.5714285714286, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787335, Length=187, Percent_Identity=31.5508021390374, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI2367365, Length=182, Percent_Identity=32.4175824175824, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787905, Length=186, Percent_Identity=30.6451612903226, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI2367175, Length=195, Percent_Identity=31.7948717948718, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI87082160, Length=184, Percent_Identity=23.3695652173913, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1786812, Length=175, Percent_Identity=28, Blast_Score=62, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI71994600, Length=190, Percent_Identity=31.5789473684211, Blast_Score=90, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI71994604, Length=186, Percent_Identity=32.258064516129, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17560332, Length=193, Percent_Identity=31.0880829015544, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17560150, Length=193, Percent_Identity=32.1243523316062, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17562904, Length=199, Percent_Identity=31.1557788944724, Blast_Score=85, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17507613, Length=189, Percent_Identity=33.3333333333333, Blast_Score=84, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI32563809, Length=189, Percent_Identity=33.3333333333333, Blast_Score=84, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI17563726, Length=192, Percent_Identity=31.25, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17538486, Length=198, Percent_Identity=33.8383838383838, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17557780, Length=189, Percent_Identity=30.6878306878307, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI71997402, Length=198, Percent_Identity=31.8181818181818, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17562906, Length=196, Percent_Identity=33.6734693877551, Blast_Score=81, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI17562990, Length=192, Percent_Identity=31.7708333333333, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17565030, Length=199, Percent_Identity=33.1658291457286, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI193204405, Length=195, Percent_Identity=32.8205128205128, Blast_Score=78, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17562908, Length=197, Percent_Identity=34.010152284264, Blast_Score=78, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17551412, Length=191, Percent_Identity=31.413612565445, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI72000259, Length=192, Percent_Identity=30.7291666666667, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI115534660, Length=183, Percent_Identity=31.1475409836066, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17538480, Length=193, Percent_Identity=29.5336787564767, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17562910, Length=193, Percent_Identity=28.4974093264249, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17559104, Length=196, Percent_Identity=31.6326530612245, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17570069, Length=186, Percent_Identity=30.1075268817204, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17560676, Length=193, Percent_Identity=26.9430051813472, Blast_Score=71, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17531453, Length=197, Percent_Identity=30.4568527918782, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17560220, Length=198, Percent_Identity=30.8080808080808, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17567345, Length=131, Percent_Identity=30.5343511450382, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17544670, Length=197, Percent_Identity=27.9187817258883, Blast_Score=67, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=193, Percent_Identity=29.5336787564767, Blast_Score=83, Evalue=5e-17,
Organism=Saccharomyces cerevisiae, GI6324126, Length=183, Percent_Identity=30.0546448087432, Blast_Score=79, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6322226, Length=186, Percent_Identity=30.1075268817204, Blast_Score=76, Evalue=7e-15,
Organism=Saccharomyces cerevisiae, GI6322861, Length=192, Percent_Identity=29.6875, Blast_Score=73, Evalue=4e-14,
Organism=Saccharomyces cerevisiae, GI6322067, Length=188, Percent_Identity=28.1914893617021, Blast_Score=67, Evalue=3e-12,
Organism=Drosophila melanogaster, GI23397609, Length=185, Percent_Identity=37.8378378378378, Blast_Score=102, Evalue=4e-22,
Organism=Drosophila melanogaster, GI24643142, Length=183, Percent_Identity=31.6939890710383, Blast_Score=92, Evalue=4e-19,
Organism=Drosophila melanogaster, GI21358495, Length=246, Percent_Identity=29.6747967479675, Blast_Score=91, Evalue=6e-19,
Organism=Drosophila melanogaster, GI24641232, Length=193, Percent_Identity=35.2331606217617, Blast_Score=88, Evalue=8e-18,
Organism=Drosophila melanogaster, GI21356301, Length=186, Percent_Identity=32.7956989247312, Blast_Score=87, Evalue=2e-17,
Organism=Drosophila melanogaster, GI28571526, Length=203, Percent_Identity=32.0197044334975, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI21357041, Length=195, Percent_Identity=33.3333333333333, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24651139, Length=189, Percent_Identity=32.8042328042328, Blast_Score=82, Evalue=6e-16,
Organism=Drosophila melanogaster, GI116007236, Length=194, Percent_Identity=32.4742268041237, Blast_Score=76, Evalue=3e-14,
Organism=Drosophila melanogaster, GI21355319, Length=186, Percent_Identity=26.8817204301075, Blast_Score=75, Evalue=6e-14,
Organism=Drosophila melanogaster, GI24648944, Length=188, Percent_Identity=31.3829787234043, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24644339, Length=205, Percent_Identity=27.3170731707317, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI116007238, Length=180, Percent_Identity=32.7777777777778, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24641388, Length=210, Percent_Identity=31.9047619047619, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI116007234, Length=197, Percent_Identity=29.4416243654822, Blast_Score=69, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24648693, Length=199, Percent_Identity=30.6532663316583, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI21355889, Length=199, Percent_Identity=30.6532663316583, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24580925, Length=196, Percent_Identity=27.5510204081633, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24639444, Length=182, Percent_Identity=29.6703296703297, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI17737361, Length=191, Percent_Identity=29.3193717277487, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI21357673, Length=187, Percent_Identity=27.807486631016, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24644337, Length=154, Percent_Identity=29.8701298701299, Blast_Score=64, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 29544; Mature: 29413

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTETYFVTGSSVGLGRSIVEAALAQGHNVVATARNPAVLEDLAARYSGQLLAVRLDVTDA
CCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCCEEEEEEECCCC
EGARDAVRQAVDKFGRLDVLINNAGFSGVGSIEDMPLELIEAQLSTNFLGAVNLTRAVLP
CCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHH
TMRARARGRILLVSSIGARIATAGAGVYYASKAAVSALAETLALEVGPLGIQVTAVEPGA
HHHHHHCCCEEEEECCCCHHHHCCCCEEEHHHHHHHHHHHHHHHEECCCCEEEEEECCCH
MRTRFAEAGSLQVSPFGPAYEATVGTTIGMMQSPEYNNILRDPDGVAAMILQVAALDDPP
HHHHHHCCCCEEECCCCCCHHHHHCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCH
SRILAGADSFEMGIGSGDARRASDLHWEKLSRSATVEERLLSA
HHHEECCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TETYFVTGSSVGLGRSIVEAALAQGHNVVATARNPAVLEDLAARYSGQLLAVRLDVTDA
CCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCCEEEEEEECCCC
EGARDAVRQAVDKFGRLDVLINNAGFSGVGSIEDMPLELIEAQLSTNFLGAVNLTRAVLP
CCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHH
TMRARARGRILLVSSIGARIATAGAGVYYASKAAVSALAETLALEVGPLGIQVTAVEPGA
HHHHHHCCCEEEEECCCCHHHHCCCCEEEHHHHHHHHHHHHHHHEECCCCEEEEEECCCH
MRTRFAEAGSLQVSPFGPAYEATVGTTIGMMQSPEYNNILRDPDGVAAMILQVAALDDPP
HHHHHHCCCCEEECCCCCCHHHHHCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCH
SRILAGADSFEMGIGSGDARRASDLHWEKLSRSATVEERLLSA
HHHEECCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]